Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F212 I1 R1
|
174 |
80.0 |
3892211 |
96.7% |
3763768 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,503,627 |
A→G |
intergenic (‑196/‑431) |
insG ← / → yjhB |
IS4 transposase/putative MFS transporter, membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,503,627 | 0 | A | G | 80.0%
| 224.6
/ 50.1
| 107 | intergenic (‑196/‑431) | insG/yjhB | IS4 transposase/putative MFS transporter, membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (13/8); new base G (47/37); total (62/45) |
| Fisher's exact test for biased strand distribution p-value = 8.06e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.47e-01 |
Only 100 of 110 total aligned reads displayed.
TGTTTGTAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCAT > NC_000913/4503529‑4503723
|
tgtTTGTAACAAAAAAAAAGATAAAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGta < 1:799249/99‑1 (MQ=255)
gtTTGTAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGtgta < 1:528254/100‑1 (MQ=255)
gtTTGTAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGtat < 1:567197/99‑1 (MQ=255)
ttGTAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAAc > 1:907600/1‑100 (MQ=255)
gTAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAg < 2:1451693/100‑1 (MQ=255)
tAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAgg < 2:955712/100‑1 (MQ=255)
tAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAgg < 2:1073657/100‑1 (MQ=255)
tAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAga < 2:1253767/100‑2 (MQ=255)
aaCAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGt > 1:870814/1‑100 (MQ=255)
aCAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGta < 1:15630/100‑1 (MQ=255)
cAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGtat > 2:649947/1‑100 (MQ=255)
cAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGtat > 1:152479/1‑100 (MQ=255)
tATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAgg < 1:438360/100‑1 (MQ=255)
tATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAgg < 1:438559/100‑1 (MQ=255)
aTCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGt < 2:15013/100‑1 (MQ=255)
aTCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGt > 2:465236/1‑100 (MQ=255)
tCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGta < 2:167691/100‑1 (MQ=255)
tCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGta < 1:460539/100‑1 (MQ=255)
cAGCTACAAAAATATGCTCAATGTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGtat > 1:1132553/1‑100 (MQ=255)
tACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTTTTTTTTTTTAACAGGTATAAAGGTATACa > 1:1320930/1‑99 (MQ=255)
aCAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGa > 2:233035/1‑100 (MQ=255)
cAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTGTGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGaa > 2:1791738/1‑100 (MQ=255)
cAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGaa > 1:1888452/1‑100 (MQ=255)
cAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGaa > 1:1889914/1‑100 (MQ=255)
cAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGaa > 1:1942013/1‑100 (MQ=255)
aaaaaTATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGaaa < 2:325404/100‑1 (MQ=255)
aaaTATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAg < 2:762026/100‑1 (MQ=255)
aaaTATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAg < 2:1918903/100‑1 (MQ=255)
gCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGa > 1:157618/1‑100 (MQ=255)
cTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGaa > 2:1710683/1‑100 (MQ=255)
tCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGaaa > 2:1317161/1‑100 (MQ=255)
tCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGaaa < 1:909608/100‑1 (MQ=255)
cAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAACGCAAAGAAAt > 1:1272867/1‑100 (MQ=255)
tttGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACt > 1:1156535/1‑100 (MQ=255)
tgtgACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGc > 2:1430258/1‑100 (MQ=255)
tgACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCaa > 1:930851/1‑100 (MQ=255)
aCATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAg > 2:1494501/1‑100 (MQ=255)
aTCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGa < 2:907601/100‑1 (MQ=255)
aTCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGa < 2:515737/100‑1 (MQ=255)
tCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaa > 1:1360647/1‑100 (MQ=255)
tCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaa > 1:1507263/1‑100 (MQ=255)
ctaGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaa < 1:1688308/98‑1 (MQ=255)
cacatAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaa > 2:1882230/5‑100 (MQ=255)
aGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaaag > 2:1688318/1‑99 (MQ=255)
aGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaaaa < 2:1942026/100‑1 (MQ=255)
aGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGaaaa > 1:38267/1‑100 (MQ=255)
gTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTTGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAAc > 1:49250/1‑100 (MQ=255)
gTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAAc < 1:1718219/100‑1 (MQ=255)
gTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAAc < 2:1507271/100‑1 (MQ=255)
tAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACa > 1:829989/1‑100 (MQ=255)
aCAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGc > 1:1731079/1‑100 (MQ=255)
aCAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGc < 1:233033/100‑1 (MQ=255)
cAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGc > 1:1664694/1‑99 (MQ=255)
cAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCt > 2:1045112/1‑100 (MQ=255)
cAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCt < 2:1451096/100‑1 (MQ=255)
aaCGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCtata < 1:1655797/100‑1 (MQ=255)
cgcgTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAAc > 1:804373/1‑100 (MQ=255)
gcgTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACg < 1:1217348/100‑1 (MQ=255)
cgTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGt > 1:455048/1‑100 (MQ=255)
gTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTa > 1:1480660/1‑100 (MQ=255)
gTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTa < 2:1546686/100‑1 (MQ=255)
gTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTa > 1:933332/1‑100 (MQ=255)
gTTTTGTTATGTAGACTGCTTGTTTTATGATCTATTGTAACAGCTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAACGAAAACAGCTATAACGt < 1:1349720/99‑1 (MQ=255)
ttttGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTaa < 1:1011873/100‑1 (MQ=255)
tttGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAg < 2:1272872/100‑1 (MQ=255)
tGTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCt > 1:781913/1‑100 (MQ=255)
gTTATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTGTAACGTAAGCTa > 1:636944/1‑100 (MQ=255)
ttATGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTaa < 2:1543936/100‑1 (MQ=255)
aTGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAg < 1:82973/100‑1 (MQ=255)
aTGTGGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAg > 1:869869/1‑100 (MQ=255)
tgtgGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGt < 1:1710672/100‑1 (MQ=255)
cgtgGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGt > 2:1379574/2‑100 (MQ=255)
gtgGATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGta > 2:348844/1‑100 (MQ=255)
tgGATTGCTTGTTTTTTTTTTTTTTTTTACAGGTATAAAGGTATACAGAAAAGCAAAGTAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGtaa > 1:1053887/1‑100 (MQ=255)
ggATTGCTTGTTTTTTGATCTGGTGTAACAGGTATAGAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGtaat > 2:1369218/1‑100 (MQ=255)
ttGCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAAc > 1:1402917/1‑100 (MQ=255)
tggttGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAAcc < 2:297365/97‑1 (MQ=255)
gCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACct > 2:1292777/1‑100 (MQ=255)
gCTTGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACct > 2:1408098/1‑100 (MQ=255)
tGTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCtctc > 2:158025/1‑100 (MQ=255)
gTTTTTTGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCa > 2:664021/1‑100 (MQ=255)
gTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCa < 1:1353338/100‑1 (MQ=255)
ttttttGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTGTAACGTAAGCTAAAGTAATAACCTCTCAg < 2:636945/100‑1 (MQ=255)
ttttttGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAg > 2:423835/1‑100 (MQ=255)
ttttttGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAg > 2:1716434/1‑100 (MQ=255)
ttttttGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAg < 1:844878/100‑1 (MQ=255)
tttttGATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGt > 2:1323924/1‑100 (MQ=255)
gATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTc < 1:517389/100‑1 (MQ=255)
gATCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTc > 2:1675332/1‑100 (MQ=255)
aTCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTcc < 2:554846/100‑1 (MQ=255)
aTCTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTcc < 2:1394649/100‑1 (MQ=255)
cTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTc > 2:189152/1‑100 (MQ=255)
cTGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTc > 2:1164113/1‑100 (MQ=255)
cTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTc > 1:1393633/1‑100 (MQ=255)
tGGTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCa > 2:1809972/1‑100 (MQ=255)
ggTGTAACAGGTATAAAGGTATACAGAAAAGCAGAGAAATACGGCAAAGGAAAACAGCTATAACGTAAGCTAATGTAATAACCTCTCAGTCTTTCCTCAt > 1:1050388/1‑100 (MQ=255)
ggTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCAt > 1:1360969/1‑100 (MQ=255)
ggTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCAt > 1:151042/1‑100 (MQ=255)
ggTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCAt > 2:717680/1‑100 (MQ=255)
ggTGTAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCAt > 2:853083/1‑100 (MQ=255)
|
TGTTTGTAACAAACTATCAGCTACAAAAATATGCTCAATTTGTGACATCAGTAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCAT > NC_000913/4503529‑4503723
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
