Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I0 R1
|
312 |
170.3 |
8276235 |
93.7% |
7754832 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,469,544 |
G→C |
49.9% |
P104A (CCT→GCT) |
chiA ← |
periplasmic endochitinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,469,544 | 0 | G | C | 49.9%
| 3.7
/ inf
| 217 | P104A (CCT→GCT) | chiA | periplasmic endochitinase |
| Reads supporting (aligned to +/- strand): ref base G (62/46); new base C (54/54); total (117/100) |
| Fisher's exact test for biased strand distribution p-value = 3.39e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
Only 100 of 223 total aligned reads displayed.
CCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACG > NC_000913/3469447‑3469643
|
gctgTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTatt < 1:2387519/100‑1 (MQ=255)
ctttttATTCCAGGAAACAAAAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAACCGAACCGCCATTAGACAGCGTATTGGAAGCAGCCGTatt < 2:185103/96‑1 (MQ=255)
tgTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTatttg > 2:2380458/1‑100 (MQ=255)
tgTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTatttg < 1:949694/100‑1 (MQ=255)
gTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTatttga > 1:1405273/1‑100 (MQ=255)
ttATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTatttgaat > 2:45303/1‑100 (MQ=255)
ttATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTatttgaat < 1:183698/100‑1 (MQ=255)
aTTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTatttgaattt > 2:3466474/1‑100 (MQ=255)
tCCATGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTatttgaatttga < 2:3551721/100‑1 (MQ=255)
tCCAGGCAACTACAGAAGAATTAGACTGCACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTACTGGATGCAGCCGTattcgaatttga > 2:1581183/1‑100 (MQ=255)
tCCAGGCAACTACAGAAGAATTAGACGTAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTatttgaatttga < 2:1657469/100‑1 (MQ=255)
tCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTatttgaatttga > 1:846755/1‑100 (MQ=255)
ccAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGGAtttgaatttgaa > 2:197660/1‑100 (MQ=255)
ccAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTAtttgaatttgaa < 1:1763999/100‑1 (MQ=255)
ccAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTAtttgaatttgaa < 1:1293005/100‑1 (MQ=255)
ctggCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTgaag > 1:2828179/3‑100 (MQ=255)
cAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTgaag < 1:1068476/100‑1 (MQ=255)
cAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTgaag > 1:1772425/1‑100 (MQ=255)
cAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTgaag > 2:191293/1‑100 (MQ=255)
cAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTgaag > 2:3427965/1‑100 (MQ=255)
aGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTgaaga < 2:3194747/100‑1 (MQ=255)
ggCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTgaagaa > 1:1704889/1‑100 (MQ=255)
ggCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTgaagaa > 1:264669/1‑100 (MQ=255)
ggCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTgaagaa > 1:2505688/1‑100 (MQ=255)
aaCTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAagaagag > 2:2954571/1‑99 (MQ=255)
tACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAg < 2:2452375/100‑1 (MQ=255)
aCAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGc > 1:3194889/1‑100 (MQ=255)
agaagaATAAGACGGAACTGTGCCCTGTGCTGGTGTAGCCCAACCTCCATACGCCCGCGTCTTCGATCCAGCCTTCCTCGAAGTTGAAGAAGATCAGCTg > 2:67665/1‑100 (MQ=255)
gaagaaTTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGc > 1:2098308/1‑100 (MQ=255)
nagaaTTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGcc > 1:3787940/2‑100 (MQ=255)
aagaaTTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGcc < 1:1692475/100‑1 (MQ=255)
aagaaTTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGcc < 2:1259951/100‑1 (MQ=255)
agaaTTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCg > 1:3558723/1‑100 (MQ=255)
aTTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGctc > 1:3725251/1‑100 (MQ=255)
aGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCttt > 1:2051634/1‑100 (MQ=255)
cGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCg > 2:482756/1‑100 (MQ=255)
ggAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGc < 1:3424537/100‑1 (MQ=255)
ggAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGc < 2:2880273/100‑1 (MQ=255)
gAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCa < 2:4049956/100‑1 (MQ=255)
aaCAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAg > 2:3837774/1‑100 (MQ=255)
aCAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAgg < 2:1772413/100‑1 (MQ=255)
aCAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAgg > 2:2727688/1‑100 (MQ=255)
cAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGa < 2:1360486/100‑1 (MQ=255)
gTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGaaa > 1:2729837/1‑100 (MQ=255)
gCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAgt > 2:256030/1‑100 (MQ=255)
cccTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAgtg < 1:437087/100‑1 (MQ=255)
cTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTa < 1:2194623/100‑1 (MQ=255)
tgtgCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTAt > 2:3299624/1‑100 (MQ=255)
gtgCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTAtt > 1:3382237/1‑100 (MQ=255)
tgCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTg < 1:599647/100‑1 (MQ=255)
gtgtAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCaa > 2:3313433/1‑99 (MQ=255)
gtgtAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCaaa > 2:151635/1‑100 (MQ=255)
tAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTg < 1:491137/100‑1 (MQ=255)
tAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTg < 1:1375323/100‑1 (MQ=255)
gCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGAc > 1:261238/1‑100 (MQ=255)
gCCGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGAc < 1:252135/100‑1 (MQ=255)
ccGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACt > 1:1613755/1‑100 (MQ=255)
ccGAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACt > 2:962546/1‑100 (MQ=255)
gAACCGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTaa > 1:1547087/1‑100 (MQ=255)
ccGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAAttt > 1:2174451/1‑100 (MQ=255)
cGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTc < 2:1093822/100‑1 (MQ=255)
cGCCATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTc < 2:3266649/100‑1 (MQ=255)
gCCATTAGCCGGCGGCTGGGCTGCAGCCGTATTTGAATTTGACGAAGATGACCTGCAGCTCTTTTCGGAGGAAAGTGTATCGCCAAACTGACTATTTTca > 2:1318843/1‑100 (MQ=255)
ccATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTcag > 2:3734512/1‑100 (MQ=255)
ccATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTcag < 1:463083/100‑1 (MQ=255)
cATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTcagc < 2:1254058/100‑1 (MQ=255)
cATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTcagc > 1:1009248/1‑100 (MQ=255)
cATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTcagc < 2:1681580/100‑1 (MQ=255)
cATTAGCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTcagc < 1:2013050/100‑1 (MQ=255)
ttAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTcagcag < 1:2365612/100‑1 (MQ=255)
tAGCCGGCGTATTGTATGCAGCCGTATTTGAATTTGAAGAAGATGATCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCagcagc < 2:769521/100‑1 (MQ=255)
aGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCt > 1:3033226/1‑100 (MQ=255)
gCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTg < 1:1108996/100‑1 (MQ=255)
gCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTg > 1:1239222/1‑100 (MQ=255)
gCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTg < 1:886575/100‑1 (MQ=255)
gCCGGCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTg > 2:1722358/1‑100 (MQ=255)
ccGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGt > 1:2336908/1‑100 (MQ=255)
ggCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTg > 1:1919918/1‑100 (MQ=255)
ttccgatctaTGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGc < 1:4090111/91‑1 (MQ=255)
gCGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGc < 2:3212666/100‑1 (MQ=255)
cGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCg > 2:804941/1‑100 (MQ=255)
cGTATTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCg < 2:3767132/100‑1 (MQ=255)
aTTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCgg > 2:3574726/1‑98 (MQ=255)
aTTGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTa < 1:582919/100‑1 (MQ=255)
ttGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTAc < 1:535433/100‑1 (MQ=255)
ttGGATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTAc < 2:4083152/100‑1 (MQ=255)
ggATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGc < 1:3290248/100‑1 (MQ=255)
ggATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGc < 2:3545665/100‑1 (MQ=255)
ggATGCAGCCGTATTTGAATGTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGc > 2:2532839/1‑100 (MQ=255)
gATGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCt > 1:2516039/1‑100 (MQ=255)
tGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCttt > 1:773998/1‑100 (MQ=255)
tGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCttt > 2:3628277/1‑100 (MQ=255)
tGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCttt < 2:2185706/100‑1 (MQ=255)
tGCAGCCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCttt > 2:1828063/1‑100 (MQ=255)
ggCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAAc < 1:2692506/100‑1 (MQ=255)
gCGTATTTGAATTTGAAGAAGATGCGCTGCCGCTCTTTTCGGAGGAAAGTGTATTGCCAAACTGACTAAGTTCAGCAGCTGTTGCGGTACGCTTTAAACg < 2:3889505/100‑1 (MQ=255)
gCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAAca > 1:672448/1‑99 (MQ=255)
gCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACg < 1:383120/100‑1 (MQ=255)
gCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACg < 2:1753466/100‑1 (MQ=255)
gCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACg < 2:3033207/100‑1 (MQ=255)
|
CCCTGCTGTTTATTCCAGGCAACTACAGAAGAATTAGACGGAACAGTGCCCTGTGCTGGTGTAGCCGAACCGCCATTAGCCGGCGTATTGGATGCAGGCGTATTTGAATTTGAAGAAGATGAGCTGCCGCTCTTTTCGCAGGAAAGTGTATTGCCAAACTGACTAATTTCAGCAGCTGTTGCGGTACGCTTTAAACG > NC_000913/3469447‑3469643
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
