Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F56 I0 R1 312 170.3 8276235 93.7% 7754832 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,648,042 T→C 100% intergenic (‑254/‑486) dinQ ← / → arsR UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,648,0420TC100.0% 652.9 / ‑6.7 190intergenic (‑254/‑486)dinQ/arsRUV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (100/88);  total (101/89)

Only 100 of 190 total aligned reads displayed.

ATGCGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGG  >  NC_000913/3647946‑3648137
                                                                                                |                                                                                               
aTGCGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATg                                                                                              >  2:3673136/1‑100 (MQ=255)
aTGCGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATg                                                                                              <  2:2810558/100‑1 (MQ=255)
  gcgcATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGt                                                                                            >  2:593327/1‑100 (MQ=255)
   cgcATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTa                                                                                           >  1:3701585/1‑100 (MQ=255)
   cgcATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTa                                                                                           <  1:322501/100‑1 (MQ=255)
       ttGCCAGAGTGAAAATGCCCCAAACCTAACTGGATATTCATACAGCACAGGCAGGCTACAAAATAAGCACGTCCTTGAAAAAGTTACAGCATGGTATTAg                                                                                       <  2:885813/100‑1 (MQ=255)
        tGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGc                                                                                      >  2:3021515/1‑100 (MQ=255)
         gCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCa                                                                                     >  1:890666/1‑100 (MQ=255)
         gCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCa                                                                                     >  2:3504426/1‑100 (MQ=255)
         gCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCa                                                                                     >  1:2988826/1‑100 (MQ=255)
         gCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCa                                                                                     >  1:1665216/1‑100 (MQ=255)
         gCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCa                                                                                     <  2:2290908/100‑1 (MQ=255)
          ccAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCAt                                                                                    >  1:421645/1‑100 (MQ=255)
          ccAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCAt                                                                                    >  1:2469008/1‑100 (MQ=255)
           cAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCAtt                                                                                   <  1:1882493/100‑1 (MQ=255)
           cAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCAtt                                                                                   <  2:633212/100‑1 (MQ=255)
           cAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCAtt                                                                                   <  2:372455/100‑1 (MQ=255)
           cAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCAt                                                                                    >  2:468448/1‑99 (MQ=255)
               gTGAAAAGGCCTCAGAGCTAACTGGATAATCATAGAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTGCAGCATGGTATTAGCATTGATg                                                                               <  2:177362/100‑1 (MQ=255)
                tGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGc                                                                              <  2:3326673/100‑1 (MQ=255)
                tGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGc                                                                              <  2:976829/100‑1 (MQ=255)
                      tGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATCGTTTCAGCATGGTATTAGCATTGATGCGTTAga                                                                        <  2:2479690/100‑1 (MQ=255)
                       gCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAgat                                                                       <  2:2978368/100‑1 (MQ=255)
                        ccTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAgatg                                                                      >  2:1530894/1‑100 (MQ=255)
                        ccTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAgatg                                                                      <  1:319709/100‑1 (MQ=255)
                        ccTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAgatg                                                                      >  2:2190307/1‑100 (MQ=255)
                        ccTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAgatg                                                                      >  1:4024301/1‑100 (MQ=255)
                          tCAGAGCTAACTGGATAATCATACAGTACATTCAGGTTATAAAACCAGCACGTACTTGCAATAGTTTCAGCATGGTATTAGCATTGATTCGTTAgatga                                                                     >  2:2001371/1‑99 (MQ=255)
                           nagagCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGatgatg                                                                   >  2:1110008/2‑100 (MQ=255)
                           cAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGatgatg                                                                   <  1:2190320/100‑1 (MQ=255)
                             gagCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGc                                                                 <  1:1758263/100‑1 (MQ=255)
                             gagCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGc                                                                 <  2:2912889/100‑1 (MQ=255)
                              agCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCt                                                                >  1:1714256/1‑100 (MQ=255)
                               gCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTa                                                               <  1:980148/100‑1 (MQ=255)
                               gCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTa                                                               >  2:2855590/1‑100 (MQ=255)
                                 tAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTAtc                                                             >  2:1617326/1‑100 (MQ=255)
                                     tGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCAc                                                         <  1:2657388/100‑1 (MQ=255)
                                      ggATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACt                                                        <  1:3788389/100‑1 (MQ=255)
                                      ggATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACt                                                        >  1:797464/1‑100 (MQ=255)
                                       gATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTc                                                       <  1:1987365/100‑1 (MQ=255)
                                         tAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCa                                                     >  1:142579/1‑100 (MQ=255)
                                         tAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCa                                                     <  2:126512/100‑1 (MQ=255)
                                         tAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCa                                                     >  1:1047372/1‑100 (MQ=255)
                                           aTCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGt                                                   >  1:1269183/1‑100 (MQ=255)
                                            tCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTc                                                  <  2:3867630/100‑1 (MQ=255)
                                            tCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTc                                                  <  1:2414648/100‑1 (MQ=255)
                                            tCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTc                                                  <  2:559458/100‑1 (MQ=255)
                                            tCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTc                                                  <  1:1735068/100‑1 (MQ=255)
                                            tCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTc                                                  <  2:622163/100‑1 (MQ=255)
                                               tACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCaga                                               >  2:1180973/1‑100 (MQ=255)
                                               tACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCaga                                               >  2:2688728/1‑100 (MQ=255)
                                                aCAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCagag                                              <  1:124445/100‑1 (MQ=255)
                                                aCAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCagag                                              <  2:1941216/100‑1 (MQ=255)
                                                 cAGTAAATGCGGGTTATAAAAGCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGCTGCGTTAGATGATGGCCATCTCAATCAAGTAAAAGc                                             >  2:1120108/1‑100 (MQ=255)
                                                  aGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCTCTCCAGTCAGAGcc                                            >  2:1862389/1‑100 (MQ=255)
                                                  aGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGcc                                            <  1:2697435/100‑1 (MQ=255)
                                                  aGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGcc                                            >  2:3059184/1‑100 (MQ=255)
                                                    tACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGccac                                          <  1:3110131/100‑1 (MQ=255)
                                                        tGCAGGTTATAAAACCAGCACGTCCTTGCAATCGTTTCAGCATGGTATTCGCCTTCATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAAc                                      <  2:1374412/100‑1 (MQ=255)
                                                           aGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCa                                   <  2:1059679/100‑1 (MQ=255)
                                                             gTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAgg                                 >  1:4080059/1‑100 (MQ=255)
                                                              ttATAAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAggg                                >  1:1165082/1‑100 (MQ=255)
                                                               tataAAACCAGCACGTCCTTGCAATCGTTTCAGCCTGGTATTACCATTGATGCGTTAGATGATGGATACCTCCCTCCATTCAGCGCCCCTCACTCAgcg                                >  2:3919602/1‑97 (MQ=255)
                                                               tataAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCTTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAgg                                 >  2:3121750/1‑98 (MQ=255)
                                                               tataAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGc                               >  1:2095664/1‑100 (MQ=255)
                                                                 taAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTg                             >  1:3352414/1‑100 (MQ=255)
                                                                 taAAACCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTg                             >  1:3481214/1‑100 (MQ=255)
                                                                  aaaaCCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCTCCAACTCAGGGCTgg                            >  1:4062225/1‑100 (MQ=255)
                                                                  aaaaCCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTgg                            >  2:73536/1‑100 (MQ=255)
                                                                  aaaaCCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTgg                            >  1:325348/1‑100 (MQ=255)
                                                                   aaaCCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGa                           >  1:1469547/1‑100 (MQ=255)
                                                                    aaCCAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGaa                          <  2:893373/100‑1 (MQ=255)
                                                                      ccAGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGaa                          <  1:2893286/98‑1 (MQ=255)
                                                                      ccAGCACGTCCGTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAg                        <  2:80824/100‑1 (MQ=255)
                                                                      ccAGCACCTCCTTGCAATAGTTTCAGCATGCTATTAGCATTGATGCCTTAGATGATTGCTATCTCCCTCCAGTCCGAGCCACCAACCCAGGGCTGGAAAg                        >  2:4025428/1‑100 (MQ=255)
                                                                       tcttcagatcTTGCAATGGTTTCAGCTGGGTATTAGCATTGAGGCGTTAGATGAGGGCTCTCTCACTCCAGCCAGAGCCACCAACTCAGGGCTg                             <  2:3287118/85‑1 (MQ=14)
                                                                        aGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTa                      >  1:659727/1‑100 (MQ=255)
                                                                        aGCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTa                      >  2:1862658/1‑100 (MQ=255)
                                                                         gCACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaa                     >  2:2538113/1‑100 (MQ=255)
                                                                          cACGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaa                    >  1:841868/1‑100 (MQ=255)
                                                                           aCGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaa                   <  2:559995/100‑1 (MQ=255)
                                                                            cGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaaa                  >  2:2931714/1‑100 (MQ=255)
                                                                            cGTCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTaaaaa                  <  1:284066/100‑1 (MQ=255)
                                                                              tCCTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAAc                >  1:3628556/1‑100 (MQ=255)
                                                                               ccTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAAcc               >  1:3096547/1‑100 (MQ=255)
                                                                               ccTTGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAAcc               >  1:3557019/1‑100 (MQ=255)
                                                                                 tccgatcggTTTCAGCATGGTAATAGCATTGAGGCGTTAGATAAGAGCTCTCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAAcc               <  2:1412950/90‑1 (MQ=11)
                                                                                  tGCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGAc            >  1:3287138/1‑100 (MQ=255)
                                                                                   gCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACg           <  2:3990221/100‑1 (MQ=255)
                                                                                   gCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACg           <  1:2345640/100‑1 (MQ=255)
                                                                                   gCAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACg           <  2:1293020/100‑1 (MQ=255)
                                                                                    cAATAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGc          >  2:1826925/1‑100 (MQ=255)
                                                                                     aaTAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCa         >  1:2609/1‑100 (MQ=255)
                                                                                       tAGTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGc          <  2:2335633/97‑1 (MQ=255)
                                                                                         gTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCaaa       >  1:1412959/1‑98 (MQ=255)
                                                                                         gTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGt     >  1:1154615/1‑100 (MQ=255)
                                                                                         gTTTCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCACAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGt     >  2:2644944/1‑100 (MQ=255)
                                                                                          tttCAGCATGGTATTAGCATTGATGCGCTAGATGATCGCTATCTCACTCCAGTCAGAGCCACCAACTCAGAGCTAGAAAGTAAAAAACCGACGCAAAGTc    >  2:2406719/1‑100 (MQ=21)
                                                                                           ttCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCg   >  1:275584/1‑100 (MQ=255)
                                                                                            tCAGCATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCgg  <  1:3595647/100‑1 (MQ=255)
                                                                                                |                                                                                               
ATGCGCATTGCCAGAGTGAAAATGCCTCAGAGCTAACTGGATAATCATACAGTACATGCAGGTTATAAAACCAGCACGTCCTTGCAATAGTTTCAGTATGGTATTAGCATTGATGCGTTAGATGATGGCTATCTCACTCCAGTCAGAGCCACCAACTCAGGGCTGGAAAGTAAAAAACCGACGCAAAGTCGG  >  NC_000913/3647946‑3648137

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A