Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I0 R1
|
312 |
170.3 |
8276235 |
93.7% |
7754832 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,984 |
T→G |
30.6% |
intergenic (‑194/+114) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,984 | 0 | T | G | 30.6%
| 551.1
/ 294.2
| 299 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (91/116); new base G (82/9); total (173/126) |
| Fisher's exact test for biased strand distribution p-value = 7.46e-15 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.96e-02 |
Only 100 of 303 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083
|
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc < 1:631813/100‑1 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 1:2368879/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:3349996/1‑100 (MQ=255)
ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:3481210/100‑1 (MQ=37)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1259998/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2038150/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTAGACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:797060/100‑3 (MQ=25)
tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTa < 1:3333944/100‑1 (MQ=255)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc < 2:1716758/100‑1 (MQ=255)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc < 1:1576143/100‑1 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACa > 2:635904/1‑100 (MQ=255)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACa > 1:2450178/1‑100 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACaaa > 1:2827324/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCg > 1:2077268/1‑100 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCg < 1:2184355/100‑1 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCg < 2:2644223/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg > 1:874685/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 2:3727612/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 1:964967/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTg < 1:1926129/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 2:2258673/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 2:278996/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGc < 1:488672/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCa > 1:293470/1‑100 (MQ=255)
gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCaaa < 2:3053229/100‑1 (MQ=255)
agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAAt < 2:924853/100‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTc > 2:3259204/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 1:435164/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCa > 1:4046233/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAAt > 1:2672826/1‑100 (MQ=255)
gcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAt > 2:2624258/1‑100 (MQ=255)
ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACAtt < 2:3675553/100‑1 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTg < 2:286178/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑c > 1:2314389/1‑100 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑c < 1:3576825/100‑1 (MQ=255)
gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGa > 2:3404234/1‑100 (MQ=255)
tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑At‑‑t > 1:3758990/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑At‑‑ttt < 1:3043425/100‑1 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTc < 2:2077562/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCg < 2:249459/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCg < 2:3562963/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCg < 1:2779013/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCg < 1:667016/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCg > 1:2535200/1‑100 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGt > 1:2651557/1‑100 (MQ=255)
aGATTGGTGACAAAGCGCGCGTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGt < 1:1371869/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTa < 2:699352/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGcc > 2:301001/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTg < 1:1206307/100‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGc > 1:3009585/1‑100 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCg < 2:955020/100‑1 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCgg < 2:2426595/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAgc < 1:1844845/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAgcg > 1:2234460/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATc > 2:768741/1‑100 (MQ=255)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCa > 1:3654130/1‑100 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAg < 1:1457480/100‑1 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAg < 1:4025592/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACGAAATCGTGCTAATTCAATATATTG‑TGGG‑CT‑‑CCACGTAGGCCTGATAAGCGTAGCGCATCAg > 2:452644/5‑100 (MQ=21)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATCATGAAAATTCAATACATTG‑CAAG‑AT‑‑TTTCGTAGGCCTGATAAGCGTAGCGCATCAg > 2:2685580/5‑100 (MQ=17)
taggCCGGATGCGGCGTTAACGCCTTATCCGGTCTACGAAATCGGGCAAAGTCAATACATTG‑CAGA‑AG‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATc < 2:3633767/94‑1 (MQ=17)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCACGCAAACTCAATATATTG‑CAGAGAT‑‑CAT‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:585792/4‑100 (MQ=17)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTACGTAGGCCTGATAAGCGGAGCGCATCAg > 2:2564800/1‑99 (MQ=255)
tATGCCGGATGCAGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAgg < 2:2516155/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTG‑C‑GA‑ATC‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3827751/3‑100 (MQ=18)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAGCATGCAAATTCAATATATTG‑CAGA‑GT‑‑TCACGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1492222/3‑100 (MQ=17)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACCTTGCTAATTCAATATATTG‑CAGG‑GA‑‑CTATGTAGGCCTGATAAGCATAGCGCATCAGGc > 1:3151707/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTG‑CAGG‑AT‑‑ACGTGTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3217352/3‑100 (MQ=18)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAAATGTGCAAATTCAATAAATTG‑CA‑A‑TTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGc > 1:1037291/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACTCCGCATCCGGCCTACAAAAGCACGCAAATTCAATATATTG‑CAGA‑GA‑‑TTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1999553/2‑100 (MQ=14)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTG‑ATCG‑AT‑‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3454652/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTG‑CAGG‑AG‑‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1112890/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAACCTGCAAATTCAATATATTG‑CAGG‑AT‑‑ACGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:4063685/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAATCATGCAAATCCAAAATATTG‑CAGG‑AG‑‑TTATGTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 2:2929945/2‑100 (MQ=21)
ccccGGATAAGGCGGTCACGCCGCATCCGGCCTACAAAATTGTGTAAATTCAATAAATTC‑ATCT‑AT‑‑CCACGTAGCCCTGAAAAGCCTAGCGCATCAAGc > 2:1456176/3‑99 (MQ=12)
gCCGGATAAGGCGTTTACGCCGCATCTGGCCTACAAATTCTTCCAAATTCAATATATTG‑CAGA‑AA‑‑TCATGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:4002995/1‑99 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTACAAAATCGTGCAAATTCAACATATTG‑CA‑A‑TTC‑TCTTGTAGGCCTGATAAGCGTAGCGCATCAGGctg > 1:3975134/1‑98 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAGATCGTGCAAATTCAATATATTG‑CATG‑AG‑‑CCACGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:1063557/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTG‑CAGG‑AG‑‑CTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:1226572/1‑99 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTG‑CAGG‑AA‑‑ACACGTAGGCCTGATAAGCGAAGCGCATCAGGCag > 2:383007/1‑99 (MQ=18)
ccGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1042869/1‑100 (MQ=255)
cGGATAAGGCGGTCACGCCGCATCCGGCCTACAAATTCATGCAATTTTAATAAGTTGCCAGA‑TA‑‑TCATGTAGACATTATAAGCGTAGCGCATCAGACa > 2:1854797/1‑98 (MQ=12)
ggataaggcgTTTACGCCGCATCCGGCCTACAAATTC‑TGCAAATTCAACAAATTG‑C‑GA‑ATC‑CCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:1622943/7‑98 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTACAAAATCGTGCTAATTCAATATATTG‑CAGA‑AA‑‑CCATGTAGGCCTGATCAGCGTAGCGCATCAGGCAgtt > 2:82242/7‑99 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCTACAAAACAGTGCAAATTCAATATATTG‑CAAT‑CT‑‑TCTGGTAGGCCTGATAAGCATCGCGCATCAGGCaagct > 1:953556/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTG‑CAGT‑TT‑‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:3104334/7‑96 (MQ=25)
ggataaggcgTTCACGCCGCATCCGGCCTACAAAGTCGTATAAATTCAATGTATTG‑CAGT‑TT‑‑ATTGGTAGGCCTGATAAGCGCAGCGCATCAGGCaatca > 2:3426665/7‑96 (MQ=25)
ggataaggcgTTAACGCCGCATCCGGCCTAGAAAATCGTGCAACTTCAATACATTG‑CAGA‑AT‑‑TTTGGTGGGCCTGATAGTTGGAGCGCATCAGGCAtttt > 2:1790215/7‑100 (MQ=18)
gataaggcgTTCACGCCGCATCCGGCCTACAAAACTGTGCAAATTCAATATATTG‑CAGG‑AA‑‑ACACGTAGGCCTGATAAGCGAAGCGCATCAGGCAgtttt > 1:1284444/6‑100 (MQ=18)
gcggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcc < 1:694945/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:2987958/1‑100 (MQ=255)
cggcgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct > 1:779891/1‑100 (MQ=255)
cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:3404254/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:3804816/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2602455/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 1:1815435/1‑100 (MQ=255)
cgTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg > 2:1152345/1‑100 (MQ=255)
aaCGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt < 1:2414212/100‑1 (MQ=255)
cTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:3901148/1‑100 (MQ=255)
cTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc > 1:1626216/1‑100 (MQ=255)
|
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACAAAATCGTGCAAATTCAATACATTG‑CAGA‑AT‑‑TTTCGTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705885‑3706083
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
