Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I0 R1
|
175 |
91.2 |
4812830 |
94.5% |
4548124 |
99.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,984 |
T→G |
22.4% |
intergenic (‑194/+114) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,984 | 0 | T | G | 22.4%
| 384.8
/ 108.5
| 164 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (59/68); new base G (33/4); total (92/72) |
| Fisher's exact test for biased strand distribution p-value = 1.69e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 |
Only 100 of 166 total aligned reads displayed.
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705885‑3706082
|
ttGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:2059358/100‑1 (MQ=255)
tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCt < 2:343468/99‑1 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:1762500/1‑100 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:1174238/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 1:2354119/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1589626/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:1490417/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:290461/100‑3 (MQ=37)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGGTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:1695748/100‑1 (MQ=255)
ggCGCTGCACGCATAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑a < 1:484109/99‑1 (MQ=255)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑Ac < 2:1003474/100‑1 (MQ=255)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCAT‑‑aa < 2:1667174/100‑2 (MQ=25)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACa > 1:2223725/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACACACTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACaa > 1:784173/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACa < 1:1927089/99‑1 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACaaa > 2:36951/1‑100 (MQ=255)
cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACaaaa > 1:1871422/1‑100 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAAt > 1:678344/1‑99 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCg < 2:1272438/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGc < 2:110183/100‑1 (MQ=255)
agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCaa > 2:557700/1‑100 (MQ=255)
agGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAAAAGAGCaaa > 1:700333/1‑99 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt > 2:694664/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt < 2:234522/100‑1 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt > 1:898542/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt < 1:557703/100‑1 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt > 1:1482337/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAt < 1:1244855/99‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCa > 1:1906128/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCa < 2:1165853/100‑1 (MQ=255)
acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCaa < 1:1228734/100‑1 (MQ=255)
cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCATTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACa < 2:766804/100‑1 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTg < 2:1772647/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGc < 2:389226/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGc < 2:628734/100‑1 (MQ=255)
ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCa > 2:1501244/1‑100 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGctg < 1:1626529/100‑3 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAg < 2:1960093/100‑1 (MQ=255)
gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGa‑a < 1:2307902/99‑1 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑Attt < 1:6553/100‑1 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑Attt < 2:2145953/100‑1 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑Attt > 2:2206745/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATAGTGCAAATTCAATACATTGCAGA‑Att > 2:2264251/1‑98 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCATTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑Atttt > 2:1590886/1‑100 (MQ=255)
cataaaCAAAGCGCACTTTGTTTATGACGGATGCGGAGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAggg > 2:613275/6‑99 (MQ=17)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGcc > 1:1879231/1‑100 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑AATTTC‑‑GTAGGcc > 1:607834/1‑100 (MQ=255)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGcc < 1:849583/99‑1 (MQ=255)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCt > 2:1186580/1‑100 (MQ=255)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCt < 2:838959/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTg > 1:1557407/1‑100 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTgn < 2:532843/100‑2 (MQ=255)
agggaGTGCGCTGTGTTTATGCCGGATGGGGCGTTAGCGCCTTATCCGGTCT‑‑ACAAAATCGTGCAAGTTCAATACATTGCAGA‑AGTTTC‑‑GTAggggtg < 2:1290413/94‑5 (MQ=17)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGTAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGAt < 1:1686261/100‑1 (MQ=255)
aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGAt < 2:2101558/100‑1 (MQ=255)
aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATaa > 1:2201746/1‑100 (MQ=255)
aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATa > 1:1093588/1‑99 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:448521/1‑100 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:156997/100‑1 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:2304713/100‑1 (MQ=255)
tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAAAGCATGCAAATTCAATATATTGCAGA‑GTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:104203/8‑100 (MQ=17)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:1038774/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:1242435/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:2374664/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCATGATAAGCGGAGCGCAt > 2:1100121/1‑99 (MQ=255)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:888596/100‑1 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:2325620/100‑1 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:2117278/100‑1 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:204111/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAGTTCGTGCAAATTCAATAAATTGCA‑A‑TATGAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2130411/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAATCGCTTAAATTCAATATATTGCACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2076592/4‑100 (MQ=21)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAAATCGTGCTAATTCAATATATTGCAGA‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2401164/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAATCGCTTAAATTCAATATATTGCACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1857376/3‑100 (MQ=21)
aTGCCGGATGCGGCGTGATCGTCTTATCCGGCCT‑‑ACAGAGGCGTATAAATTCAATGTATTGCAGT‑TTATTG‑‑GTAGGCCTGATGCGCTGCGCTTATCAGGc < 2:791867/100‑1 (MQ=21)
ggctggataaggcgTTCACGCCGCATCCAGCCT‑‑ACAAAATTGTGCAAAATCAATGGATTGCACA‑GCTAGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1530560/11‑100 (MQ=25)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAACATGCAAATTCAATAGATTGCAGA‑GATTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1054276/2‑100 (MQ=17)
gcctgataaggcgTTTACGCCGCATCAGGCCT‑‑ACAAGATCGTGCAAATTCAACATATTGC‑CA‑CTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCa > 1:2282992/10‑100 (MQ=21)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAAATCGTGCTAATTCAATATATTGCAGA‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:332210/1‑99 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAGATCGTGCAAATTCAATATATTGCATG‑AGCCAC‑‑GTAGGCCTGATAAGCGTAGCGCaagatcgga > 2:1440153/1‑92 (MQ=17)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAGTCGTATAAATTCAATGTATTGCAGT‑TTATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:2148007/1‑99 (MQ=25)
ccGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑ACCAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1923862/1‑100 (MQ=18)
tggataaggcgTTCACGCCGCATCCAGCCT‑‑ACAAAATTGTGCAAAATCAATGGATTGCACA‑GCTAGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagat > 1:85804/8‑97 (MQ=25)
cggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAATCATGAAAATTCAATACATTGCAAG‑ATTTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgc > 1:2325053/8‑97 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCT‑‑ACAAAAGCATGCAAATTCAATATATTGCAGA‑GTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:160387/7‑99 (MQ=17)
ggataaggcgTTCACGCCGCATCCTGCCT‑‑ACAAAAGCACGCAAATTCAATATATTGCAGA‑GATGGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:2268452/7‑100 (MQ=14)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAATCGCTTAAATTCAATATATTGCACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 2:933864/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAATCGCTTAAATTCAATATATTGCACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattc > 2:1656026/7‑99 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAATCATGAAAATTCAATACATTACAAG‑ATTTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 2:1416748/7‑96 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAACATGCAAATTCAATAGATTGCAGAGATTAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1110079/7‑100 (MQ=17)
ggataaggcgTTAACGCCGCATCCGGCATAAACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1378469/7‑100 (MQ=18)
cgTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:1664770/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1874209/100‑1 (MQ=255)
atcGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:1620921/3‑100 (MQ=255)
aaCGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATACGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 1:934373/1‑99 (MQ=255)
aaCGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2207989/1‑100 (MQ=255)
aaCGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:1253336/1‑100 (MQ=255)
aCGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:1516960/100‑1 (MQ=255)
cGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑GTTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 2:1328489/1‑100 (MQ=255)
gCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:1523186/1‑100 (MQ=255)
ccTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:1859851/1‑100 (MQ=255)
|
TTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705885‑3706082
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
