Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I0 R1
|
312 |
170.3 |
8276235 |
93.7% |
7754832 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,551,633 |
A→G |
52.9% |
intergenic (‑337/‑3) |
gntP ← / → uxuA |
fructuronate transporter/mannonate hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,551,633 | 0 | A | G | 52.9%
| 44.7
/ 254.7
| 193 | intergenic (‑337/‑3) | gntP/uxuA | fructuronate transporter/mannonate hydrolase |
| Reads supporting (aligned to +/- strand): ref base A (51/40); new base G (63/39); total (114/79) |
| Fisher's exact test for biased strand distribution p-value = 4.65e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 |
Only 100 of 201 total aligned reads displayed.
CAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCAC > NC_000913/4551534‑4551731
|
cAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGaaaaa > 1:3296025/1‑100 (MQ=255)
aaCGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAAt > 2:3143176/1‑100 (MQ=255)
cGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCa > 2:3423656/1‑100 (MQ=255)
gCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCAt > 1:2937201/1‑100 (MQ=255)
ccACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATg > 1:1991888/1‑100 (MQ=255)
ccACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATg < 1:3802035/100‑1 (MQ=255)
aCGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGa < 1:1104160/100‑1 (MQ=255)
ggCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAAc > 1:1342043/1‑100 (MQ=255)
gCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACa > 1:4025463/1‑100 (MQ=255)
gCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACGCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACa < 1:2178573/100‑1 (MQ=255)
gCTGCGGTCTAGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGa < 1:2517665/97‑1 (MQ=255)
cTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAg > 2:3763765/1‑100 (MQ=255)
cTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAg < 2:3219025/100‑1 (MQ=255)
tCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGAAACCCACTAGGTGAAAGAGGAAAAATCATGGAACAGACCTgg > 2:2901384/1‑100 (MQ=255)
cTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGgc < 1:3502362/100‑1 (MQ=255)
ggTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGgcgc > 2:679254/1‑100 (MQ=255)
ggTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGgcgc > 2:1749771/1‑100 (MQ=255)
ggTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTACGTGAAAGAGGAAAAGTCATGGAACAGACCTGgcgc > 1:3049960/1‑100 (MQ=255)
gttgttCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCt < 1:3143195/100‑1 (MQ=255)
ttccatgacttttcctctttcacatagtgggttccacagcaaagagacgcggaacccACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTgg > 1:1749291‑M2/58‑100 (MQ=255)
tgttCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTgg > 1:3678317/1‑100 (MQ=255)
tgttCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTgg > 1:425093/1‑100 (MQ=255)
ttCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTCTGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTa < 2:2443994/100‑1 (MQ=255)
tCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTAc > 2:527647/1‑100 (MQ=255)
tCATCCGGATACATAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGACAAGTCATGGAACAGACCTGGCGCTGGTa > 2:1524837/1‑99 (MQ=255)
cATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACg < 2:2455208/100‑1 (MQ=255)
cATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACg < 2:1220065/100‑1 (MQ=255)
cATCCGGATACCTAAACAACTACAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAGAGTCCTGGAACAGACCTGGCGCtag > 2:2562202/1‑94 (MQ=255)
aTCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACgg > 1:219849/1‑100 (MQ=255)
ccGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGcc < 2:635204/100‑1 (MQ=255)
ccGGATACCTAAACAACTCCAGGGTTCCGCGTCCCTTTGCTGTGGAACCCACTATGTGAAAGAAGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGcc < 1:385295/100‑1 (MQ=255)
cGGATACCTGAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGccc < 2:1418412/100‑1 (MQ=255)
gATACCTAAACAACTCCAGGGATCCGCGTCTCTTTGCTGTGGAACCCACTTTGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGccc > 2:481260/1‑98 (MQ=255)
aTACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCaaa < 2:2812125/100‑1 (MQ=255)
tACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAAc < 2:3913854/100‑1 (MQ=255)
tACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAAc > 1:7424/1‑100 (MQ=255)
tACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAAc < 1:232657/100‑1 (MQ=255)
aCCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACg < 1:1270568/100‑1 (MQ=255)
ccTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGa > 1:3363486/1‑100 (MQ=255)
cTAAACAACTCAAGGGTTGCGCGTCTCTTTGCTGTGGCACCCACTATGTGAAAGAGGTAATGTCATGGCACGGACCTGTGGCTGGTACGGCACaa > 2:3605081/1‑95 (MQ=255)
aaaCAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATcc > 1:1766496/1‑100 (MQ=255)
aacaacTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCg > 1:868643/1‑100 (MQ=255)
tcacatagtgggttccacagcaaagagacgcggaacccACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCgg > 2:3295227‑M2/39‑100 (MQ=255)
aacTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGtt < 2:254617/100‑1 (MQ=255)
cTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTc > 2:2612675/1‑100 (MQ=255)
cTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTc > 1:519140/1‑100 (MQ=255)
cTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTc > 2:3647550/1‑100 (MQ=255)
cTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTc < 1:876277/100‑1 (MQ=255)
tCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCt < 1:2525530/100‑1 (MQ=255)
ccAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGACAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCtt > 2:1114609/1‑100 (MQ=255)
agtgggttccacagcaaagagacgcggaacccACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCtt > 1:640486‑M2/33‑100 (MQ=255)
gtgggttccacagcaaagagacgcggaacccACTATGTGAAAGAGGAAAAGTCATGGGACAGACCCGGCGCTGGTACGGCCCGAACGAGCCGGTTTCttt > 2:87591‑M2/32‑100 (MQ=255)
gtgggttccacagcaaagagacgcggaacccACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCttt > 1:759301‑M2/32‑100 (MQ=255)
gtgggttccacagcaaagagacgcggaacccACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCttt > 2:3379831‑M2/32‑100 (MQ=255)
cAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCt < 1:2337931/98‑1 (MQ=255)
cAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCttt < 2:1347613/100‑1 (MQ=255)
GTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCt < 1:1654403‑M1/100‑1 (MQ=255)
GTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGGCCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCt > 2:1166788‑M1/1‑100 (MQ=255)
TTCCGCGTCTCTTTTCTGTGGAACCCACTATGTAAAAGAAGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTg > 2:3993629‑M1/1‑100 (MQ=255)
TCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGa < 1:3764232‑M1/100‑1 (MQ=255)
CCGCGTCTCTTTGCTGTGGAACCCACTCTGGGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGa > 2:742382‑M1/1‑99 (MQ=255)
CCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGAt < 1:1606450‑M1/100‑1 (MQ=255)
gcgTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATg < 2:230713/99‑1 (MQ=255)
cgTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTc < 1:124144/100‑1 (MQ=255)
tctcTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGtn < 2:4063202/98‑2 (MQ=255)
tctcTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCg > 1:3204066/1‑100 (MQ=255)
tctTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCACACGATCCGGTTTCTTTAGCTGagatcggaa > 1:4123157/1‑92 (MQ=255)
tctTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTc > 2:1940273/1‑100 (MQ=255)
ctTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCa > 1:1836362/1‑100 (MQ=255)
ctTTGCTGTGGAACACACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCg < 2:1018608/97‑1 (MQ=255)
tGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggc > 1:3099961/1‑100 (MQ=255)
tGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggc > 1:2589036/1‑100 (MQ=255)
tGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggc < 1:1869460/100‑1 (MQ=255)
tgtgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGGTGTCCGTCAggc > 1:2516711/1‑97 (MQ=255)
tgtgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggcggg < 1:2631716/100‑1 (MQ=255)
gtgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggcgggc < 2:976236/100‑1 (MQ=255)
gtgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggcgggc > 2:300523/1‑100 (MQ=255)
gtgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggcgggc > 2:184469/1‑100 (MQ=255)
cccACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAGCt > 2:3272876‑M2/4‑100 (MQ=255)
cccACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACt < 1:2768641‑M2/97‑1 (MQ=255)
cACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTgg < 2:4128807‑M2/99‑1 (MQ=255)
aCTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTgg < 1:3208778/99‑1 (MQ=255)
aTGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTg < 2:2492913/100‑1 (MQ=255)
gtgAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGt > 2:3525402/1‑100 (MQ=255)
gtgAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGt < 1:3589209/100‑1 (MQ=255)
gtgAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTgg > 1:1043150/1‑99 (MQ=255)
gtgAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGt < 1:1539867/100‑1 (MQ=255)
tgAAAGAGGAAACGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGtt > 1:2711762/1‑100 (MQ=255)
tgAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGtt > 1:950632/1‑100 (MQ=255)
tgAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGATTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGtt > 2:1794564/1‑100 (MQ=255)
gAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTa > 2:1664438/1‑100 (MQ=255)
gAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTa > 2:4438/1‑100 (MQ=255)
gAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTa > 2:3093364/1‑100 (MQ=255)
agagGAAGAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACcg > 2:2887686/1‑100 (MQ=255)
ggAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCgcgc > 1:2081645/1‑100 (MQ=255)
ggAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCgcgc > 2:2086935/1‑100 (MQ=255)
aaaagTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTg < 1:576766/100‑1 (MQ=255)
aaaagTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTg < 2:2698304/100‑1 (MQ=255)
aaaagTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTg < 1:2583362/100‑1 (MQ=255)
aaaaTCATGGAACTGACCTGGCGCTGGTACGCCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCt < 2:371303/98‑1 (MQ=255)
|
CAACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGCAC > NC_000913/4551534‑4551731
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
