Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I1 R1
|
165 |
53.8 |
2611523 |
96.4% |
2517508 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,551,633 |
A→G |
intergenic (‑337/‑3) |
gntP ← / → uxuA |
fructuronate transporter/mannonate hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,551,633 | 0 | A | G | 97.3%
| 127.8
/ NA
| 37 | intergenic (‑337/‑3) | gntP/uxuA | fructuronate transporter/mannonate hydrolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (20/16); minor base C (1/0); total (21/16) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGC > NC_000913/4551536‑4551729
|
aCGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTc < 1:578878/100‑1 (MQ=255)
cGCCACGGCTGCGGTCTGGTTTTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCa < 2:949374/100‑1 (MQ=255)
cGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCa < 2:727117/100‑1 (MQ=255)
cACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATgg < 2:852610/100‑1 (MQ=255)
cACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATgg < 1:170708/100‑1 (MQ=255)
cGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGaa > 1:924172/1‑100 (MQ=255)
ggCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTTTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAAc < 2:696283/100‑1 (MQ=255)
gCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGAc < 1:1144382/100‑1 (MQ=255)
cGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGAcc < 1:237295/100‑1 (MQ=255)
gTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTg > 1:469239/1‑100 (MQ=255)
tGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGgcg < 1:66108/100‑1 (MQ=255)
tGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGgcg < 1:536033/100‑1 (MQ=255)
gttgttCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCt > 1:1092728/1‑100 (MQ=255)
ttCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTa < 2:1198085/100‑1 (MQ=255)
ccGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGcc > 2:202411/1‑100 (MQ=255)
ccGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAACTCATGGAACAGACCTGGCGCTGGTACGGcc > 2:519513/1‑100 (MQ=255)
tACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAAc > 2:409769/1‑100 (MQ=255)
tACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAAc > 2:897480/1‑100 (MQ=255)
cTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGAt > 2:1262280/1‑100 (MQ=255)
aaaCAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATcc > 2:1119292/1‑100 (MQ=255)
cTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGATCGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTc < 2:21070/100‑1 (MQ=255)
cAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCttt < 2:469235/100‑1 (MQ=255)
ggTTCCGAGTCGCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGc < 2:1261129/100‑1 (MQ=255)
gTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCt > 2:1162072/1‑100 (MQ=255)
tctcTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCg > 1:196448/1‑100 (MQ=255)
tctTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTc > 1:1116322/1‑100 (MQ=255)
tctTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTc < 1:202413/100‑1 (MQ=255)
tgtgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggcggg > 1:110467/1‑100 (MQ=255)
tgGAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAggcgggcg < 2:1043951/100‑1 (MQ=255)
ggAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGgcgc > 2:886856/1‑100 (MQ=255)
ggAACCCACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGgcgc > 1:1189315/1‑100 (MQ=255)
cACTATGTGAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTgg > 2:195671/1‑100 (MQ=255)
gtgAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGt > 2:581372/1‑100 (MQ=255)
tgAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGtt > 1:619196/1‑100 (MQ=255)
gAAAGAGGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTa > 2:1065971/1‑100 (MQ=255)
agagGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACcg > 1:273294/1‑100 (MQ=255)
agagGAAAAGTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACcg > 1:273423/1‑100 (MQ=255)
aaagTCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGc > 2:692723/1‑100 (MQ=255)
|
ACGCCACGGCTGCGGTCTGGTTGTTCATCCGGATACCTAAACAACTCCAGGGTTCCGCGTCTCTTTGCTGTGGAACCCACTATGTGAAAGAGGAAAAATCATGGAACAGACCTGGCGCTGGTACGGCCCAAACGATCCGGTTTCTTTAGCTGATGTCCGTCAGGCGGGCGCAACTGGCGTGGTTACCGCGCTGC > NC_000913/4551536‑4551729
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
