mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 36,231 | T→C | intergenic (‑69/+40) | caiD ← / ← caiC | carnitinyl‑CoA dehydratase/putative crotonobetaine/carnitine‑CoA ligase |
| RA | 106,554 | A→G | intergenic (+98/‑3) | ftsZ → / → lpxC | GTP‑binding tubulin‑like cell division protein/UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase |
| RA | 139,187 | T→C | N680S (AAT→AGT) | gcd ← | glucose dehydrogenase |
| RA | 162,973 | G→A | C290Y (TGT→TAT) | hrpB → | putative ATP‑dependent helicase |
| JC | 190,553 | Δ14 bp | coding (680‑693/726 nt) | rpsB → | 30S ribosomal subunit protein S2 |
| RA | 216,568 | C→T | A146T (GCC→ACC) | yaeF ← | putative lipoprotein |
| RA | 236,541 | C→T | R159* (CGA→TGA) | dnaQ → | DNA polymerase III epsilon subunit |
| RA | 254,727 | A→C | G330G (GGT→GGG) | pepD ← | aminoacyl‑histidine dipeptidase (peptidase D) |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 318,690 | A→G | S438P (TCA→CCA) | rclA ← | reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide‑dependent disulfide oxidoreductase family |
| RA | 331,668 | A→G | intergenic (+172/‑703) | betT → / → yahA | choline transporter of high affinity/c‑di‑GMP‑specific phosphodiesterase |
| RA | 338,334 | T→A | S4T (TCA→ACA) | yahG → | DUF1116 family protein |
| RA | 339,856 | T→C | intergenic (+113/‑309) | yahG → / → yahI | DUF1116 family protein/carbamate kinase‑like protein |
| RA | 344,961 | T→C | N262N (AAT→AAC) | yahL → | uncharacterized protein |
| RA | 401,440 | T→G | S19A (TCG→GCG) | iraP → | anti‑RssB factor, RpoS stabilzer during Pi starvation; anti‑adapter protein |
| RA | 426,040 | A→T | T344S (ACG→TCG) | queA → | S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase |
| RA | 428,188 | G→T | R181L (CGC→CTC) | secD → | SecYEG protein translocase auxillary subunit |
| RA | 432,771 | T→G | R27R (CGA→CGC) | yajI ← | putative lipoprotein |
| RA | 497,139 | (T)5→6 | intergenic (+145/‑36) | htpG → / → adk | protein refolding molecular co‑chaperone Hsp90, Hsp70‑dependent; heat‑shock protein; ATPase/adenylate kinase |
| RA | 520,993 | T→G | V193G (GTC→GGC) | ybbP → | putative ABC transporter permease |
| RA | 524,866 | A→G | T536A (ACC→GCC) | rhsD → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 555,549 | T→C | R313R (CGT→CGC) | cysS → | cysteinyl‑tRNA synthetase |
| RA | 587,625 | A→T | A119A (GCT→GCA) | ybcH ← | PRK09936 family protein |
| RA | 658,153 | A→G | pseudogene (123/195 nt) | ybeM → | pseudogene, C‑N hydrolase superfamily homology;putative enzyme; Not classified; putative amidase |
| RA | 676,403 | C→T | A49T (GCC→ACC) | ybeQ ← | Sel1 family TPR‑like repeat protein |
| RA | 700,805 | A→T | C264S (TGC→AGC) | nagC ← | N‑acetylglucosamine‑inducible nag divergent operon transcriptional repressor |
| RA | 720,946 | C→T | intergenic (+106/+110) | ybfK → / ← kdpE | uncharacterized protein/response regulator in two‑component regulatory system with KdpD |
| RA | 753,654 | G→A | A272V (GCG→GTG) | gltA ← | citrate synthase |
| RA | 772,209 | C→A | T251N (ACC→AAC) | cydA → | cytochrome d terminal oxidase, subunit I |
| RA | 796,681 | C→A | A43D (GCC→GAC) | modC → | molybdate ABC transporter ATPase; chlorate resistance protein |
| RA | 796,704 | C→T | Q51* (CAA→TAA) | modC → | molybdate ABC transporter ATPase; chlorate resistance protein |
| RA | 801,422 | G→A | A222T (GCA→ACA) | ybhH → | putative PrpF family isomerase |
| RA | 849,405 | G→A | T231T (ACC→ACT) | rhtA ← | threonine and homoserine efflux system |
| RA | 868,748 | Δ1 bp | coding (1229/1872 nt) | gsiA → | glutathione ABC transporter ATPase |
| RA | 873,807 | G→A | G277S (GGT→AGT) | yliE → | putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| RA | 875,714 | T→G | V127G (GTC→GGC) | yliF → | putative membrane‑anchored diguanylate cyclase |
| RA | 882,722 | G→A | R5C (CGC→TGC) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| RA | 894,155 | T→G | D124E (GAT→GAG) | potF → | putrescine ABC transporter periplasmic binding protein |
| RA | 914,948 | A→G | intergenic (‑91/+404) | ybjE ← / ← aqpZ | putative transporter/aquaporin Z |
| RA | 1,034,326 | A→G | N358S (AAC→AGC) | hyaB → | hydrogenase 1, large subunit |
| RA | 1,093,803 | (A)6→5 | coding (928/1359 nt) | ycdT → | diguanylate cyclase, membrane‑anchored |
| RA | 1,100,233 | G→A | intergenic (+39/‑63) | ycdY → / → ycdZ | redox enzyme maturation protein (REMP) chaperone for YcdX/DUF1097 family inner membrane protein |
| RA | 1,105,806 | T→C | intergenic (+81/‑14) | ymdA → / → ymdB | uncharacterized protein/O‑acetyl‑ADP‑ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit |
| RA | 1,127,049 | A→G | T82A (ACG→GCG) | yceM → | putative oxidoreductase |
| RA | 1,143,125 | C→T | D415N (GAC→AAC) | rne ← | endoribonuclease; RNA‑binding protein;RNA degradosome binding protein |
| RA | 1,188,434 | A→G | V448A (GTA→GCA) | phoQ ← | sensory histidine kinase in two‑component regulatory system with PhoP |
| RA | 1,197,739 | A→G | S167P (TCC→CCC) | ymfE ← | e14 prophage; putative inner membrane protein |
| RA | 1,264,376 | T→C | I221I (ATT→ATC) | hemA → | glutamyl tRNA reductase |
| RA | 1,292,944 | T→C | intergenic (‑22/‑583) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,303,332 | T→G | V145G (GTG→GGG) | oppB → | oligopeptide ABC transporter permease |
| RA | 1,369,921 | A→G | E78G (GAG→GGG) | pspE → | thiosulfate:cyanide sulfurtransferase (rhodanese) |
| RA | 1,390,147 | G→A | A151V (GCC→GTC) | mpaA ← | murein peptide amidase A |
| RA | 1,401,718 | A→C | V19G (GTC→GGC) | abgT ← | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| RA | 1,401,844 | A→G | I471T (ATC→ACC) | abgB ← | p‑aminobenzoyl‑glutamate hydrolase, B subunit |
| RA | 1,414,756 | (T)6→5 | coding (38/810 nt) | recT ← | Rac prophage; recombination and repair protein |
| RA | 1,420,196 | T→C | N16D (AAC→GAC) | racR ← | Rac prophage; putative DNA‑binding transcriptional regulator |
| RA | 1,434,402 | T→C | intergenic (‑178/+556) | ynaE ← / ← ttcC | cold shock protein, Rac prophage/pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related |
| RA | 1,446,972 | Δ1 bp | coding (312/906 nt) | feaR ← | transcriptional activator for tynA and feaB |
| RA | 1,462,065 | T→G | G391G (GGT→GGG) | paaJ → | 3‑oxoadipyl‑CoA/3‑oxo‑5,6‑dehydrosuberyl‑CoA thiolase |
| RA | 1,475,315 | G→T | V58L (GTG→TTG) | ydbD → | PF10971 family putative periplasmic methylglyoxal resistance protein |
| RA | 1,501,912 | T→A | I117I (ATT→ATA) | tehB → | tellurite, selenium methyltransferase, SAM‑dependent; tellurite, selenium resistance protein |
| RA | 1,505,561 | T→C | M174V (ATG→GTG) | ydcO ← | BenE family inner membrane putative transporter |
| RA | 1,519,159 | A→T | T45S (ACA→TCA) | curA → | curcumin/dihydrocurcumin reductase, NADPH‑dependent |
| RA | 1,530,076 | (A)7→8 | coding (155/483 nt) | ydcD → | putative immunity protein for RhsE |
| RA | 1,553,128 | T→C | V237V (GTA→GTG) | adhP ← | ethanol‑active dehydrogenase/acetaldehyde‑active reductase |
| RA | 1,560,731 | Δ1 bp | coding (199/1023 nt) | ddpB ← | D,D‑dipeptide ABC transporter permease |
| RA | 1,580,094 | C→T | D233N (GAT→AAT) | ydeM ← | putative YdeN‑specific sulfatase‑maturating enzyme |
| RA | 1,642,062 | +T | coding (208/213 nt) | cspF → | Qin prophage; cold shock protein |
| RA | 1,648,375 | T→C | intergenic (+34/‑133) | dicA → / → ydfA | Qin prophage; putative regulator for DicB/Qin prophage; uncharacterized protein |
| RA | 1,665,195 | (T)7→8 | intergenic (+75/‑120) | dmsD → / → clcB | twin‑argninine leader‑binding protein for DmsA and TorA/H(+)/Cl(‑) exchange transporter |
| RA | 1,673,475 | A→G | G9G (GGT→GGC) | mdtJ ← | multidrug efflux system transporter |
| RA | 1,681,932 | T→C | P33P (CCA→CCG) | ydgC ← | GlpM family inner membrane protein |
| RA | 1,701,585 | Δ1 bp | coding (629/1173 nt) | malY → | PLP‑dependent beta‑cystathionase and maltose regulon regulator |
| RA | 1,703,693 | C→T | A206T (GCG→ACG) | ydgJ ← | putative oxidoreductase |
| RA | 1,712,306 | (T)7→8 | intergenic (+148/‑463) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,712,518 | (C)6→5 | intergenic (+360/‑251) | nth → / → dtpA | DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)/dipeptide and tripeptide permease A |
| RA | 1,728,444 | C→A | T33N (ACC→AAC) | rnt → | RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair |
| RA | 1,778,470 | A→G | Y278H (TAC→CAC) | ydiP ← | putative DNA‑binding transcriptional regulator |
| RA | 1,785,283 | Δ1 bp | coding (1830/2379 nt) | ppsA ← | phosphoenolpyruvate synthase |
| RA | 1,800,755 | C→T | V606I (GTT→ATT) | thrS ← | threonyl‑tRNA synthetase |
| RA | 1,827,031 | T→A | D410V (GAT→GTT) | astB ← | succinylarginine dihydrolase |
| RA | 1,870,998 | (T)6→5 | coding (614/1476 nt) | yeaI → | putative membrane‑anchored diguanylate cyclase |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 1,983,761 | C→T | E437K (GAA→AAA) | araG ← | L‑arabinose ABC transporter ATPase |
| RA | 1,988,339 | C→T | Q40* (CAG→TAG) | yecR → | lipoprotein, function unknown |
| RA | 2,044,638 | C→A | intergenic (+14/‑300) | asnT → / → yeeJ | tRNA‑Asn/putative adhesin |
| RA | 2,071,321 | A→G | intergenic (+110/‑218) | yeeP → / → flu | pseudogene, CP4‑44 prophage; 50S ribosome‑binding GTPase family;Phage or Prophage Related; putative histone/CP4‑44 prophage; antigen 43 (Ag43) phase‑variable biofilm formation autotransporter |
| RA | 2,076,841 | G→A | A9T (GCC→ACC) | yeeT → | CP4‑44 prophage; uncharacterized protein |
| RA | 2,090,860 | G→A | A223A (GCG→GCA) | hisG → | ATP phosphoribosyltransferase |
| RA | 2,165,590 | Δ1 bp | intergenic (+69/‑78) | yegP → / → yegQ | UPF0339 family protein/putative peptidase |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,183,656 | T→A | intergenic (‑5/+60) | yegX ← / ← thiD | putative family 25 glycosyl hydrolase/hydroxy‑methylpyrimidine kinase and hydroxy‑phosphomethylpyrimidine kinase |
| RA | 2,191,432 | C→T | G72S (GGC→AGC) | yehC ← | putative periplasmic pilin chaperone |
| RA | 2,210,811 | C→T | pseudogene (1712/2001 nt) | yehQ → | pseudogene |
| RA | 2,239,199 | T→C | N31D (AAC→GAC) | mglA ← | methyl‑galactoside ABC transporter ATPase |
| RA | 2,248,192 | A→T | L114Q (CTG→CAG) | lysP ← | lysine transporter |
| RA | 2,278,298 | C→T | intergenic (‑61/+272) | yejG ← / ← bcr | uncharacterized protein/bicyclomycin/cysteine/sulfonamide efflux transporter |
| RA | 2,299,499 | A→G | L27S (TTA→TCA) | napH ← | ferredoxin‑type protein |
| RA | 2,306,399 | C→T | W119* (TGG→TAG) | mqo ← | malate dehydrogenase, FAD/NAD(P)‑binding domain |
| RA | 2,307,386 | A→T | D410E (GAT→GAA) | yojI ← | microcin J25 efflux ABC transporter permease/ATPase |
| RA | 2,308,182 | A→T | L145Q (CTG→CAG) | yojI ← | microcin J25 efflux ABC transporter permease/ATPase |
| RA | 2,436,937 | A→T | D305E (GAT→GAA) | pdxB ← | erythronate‑4‑phosphate dehydrogenase |
| RA | 2,457,953 | T→C | K403E (AAA→GAA) | fadJ ← | enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,461,483 | G→T | A60S (GCA→TCA) | fadL → | long‑chain fatty acid outer membrane transporter |
| RA | 2,469,656 | (T)7→8 | coding (526/1332 nt) | gtrS → | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| RA | 2,521,967 | C→A | A171S (GCG→TCG) | xapR ← | transcriptional activator of xapAB |
| RA | 2,563,518 | (A)5→6 | intergenic (+401/‑74) | yffP → / → yffQ | CPZ‑55 prophage; uncharacterized protein/CPZ‑55 prophage; uncharacterized protein |
| RA | 2,564,525 | G→A | M1M (ATG→ATA) † | yffS → | CPZ‑55 prophage; uncharacterized protein |
| RA | 2,600,288 | C→T | S128L (TCG→TTG) | gcvR → | transcriptional repressor, regulatory protein accessory to GcvA |
| RA | 2,715,439 | T→C | L6S (TTA→TCA) | eamB → | cysteine and O‑acetylserine exporter |
| RA | 2,720,543 | C→A | R197R (CGC→CGA) | pka → | protein lysine acetyltransferase |
| RA | 2,759,132 | A→G | I50V (ATT→GTT) | yfjI → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,759,497 | T→C | C171C (TGT→TGC) | yfjI → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,782,076 | T→C | V217V (GTA→GTG) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,810,756 | G→A | intergenic (+77/‑14) | ygaH → / → mprA | putative L‑valine exporter, norvaline resistance protein/transcriptional repressor of microcin B17 synthesis and multidrug efflux |
| RA | 2,852,356 | T→A | L74Q (CTG→CAG) | hypD → | hydrogenase maturation protein |
| RA | 2,887,352 | T→A | intergenic (‑133/+226) | ygcB ← / ← cysH | Cascade complex anti‑viral R‑loop helicase‑annealase Cas3/phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
| RA | 2,892,993 | G→A | E113K (GAA→AAA) | ygcN → | putative oxidoreductase |
| RA | 2,964,868 | T→C | K96K (AAA→AAG) | thyA ← | thymidylate synthetase |
| RA | 2,971,955 | G→A | R120H (CGC→CAC) | tas → | putative NADP(H)‑dependent aldo‑keto reductase |
| RA | 2,987,655 | Δ1 bp | coding (120/633 nt) | yqeH → | putative LuxR family transcriptional regulator |
| RA | 2,992,747 | A→C | E218D (GAA→GAC) | ygeH → | putative transcriptional regulator |
| RA | 2,998,129 | C→T | pseudogene (700/1137 nt) | ygeQ ← | pseudogene, glycosyl hydrolase family 15, part of T3SS PAI ETT2 remnant |
| RA | 3,017,118 | C→A | R353R (CGC→CGA) | ygfK → | putative Fe‑S subunit oxidoreductase subunit |
| RA | 3,070,609 | T→C | K212K (AAA→AAG) | fbaA ← | fructose‑bisphosphate aldolase, class II |
| RA | 3,118,566 | C→T | A183T (GCG→ACG) | sslE ← | putative secreted and surface‑associated lipoprotein mucinase |
| RA | 3,190,398 | T→G | M173R (ATG→AGG) | yqiH → | putative periplasmic pilin chaperone |
| RA | 3,239,779 | C→T | intergenic (+234/‑165) | alx → / → sstT | putative membrane‑bound redox modulator/sodium:serine/threonine symporter |
| RA | 3,244,928 | T→C | intergenic (‑187/‑296) | uxaC ← / → exuT | uronate isomerase/hexuronate transporter |
| RA | 3,379,768 | +C | coding (230/1128 nt) | zapE ← | divisome ATPase |
| RA | 3,452,057 | A→T | I77N (ATC→AAC) | rplD ← | 50S ribosomal subunit protein L4 |
| RA | 3,469,544 | G→C | P104A (CCT→GCT) | chiA ← | periplasmic endochitinase |
| RA | 3,542,354 | Δ1 bp | coding (1948/2322 nt) | feoB → | ferrous iron transporter protein B and GTP‑binding protein; membrane protein |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,608,471 | T→A | L674Q (CTG→CAG) | zntA → | zinc, cobalt and lead efflux system |
| RA | 3,622,796 | T→G | L1202R (CTG→CGG) | rhsB → | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| RA | 3,638,525 | A→G | E295G (GAA→GGA) | pitA → | phosphate transporter, low‑affinity; tellurite importer |
| RA | 3,639,576 | (A)6→5 | coding (145/336 nt) | uspB ← | universal stress (ethanol tolerance) protein B |
| RA | 3,648,042 | T→C | intergenic (‑254/‑486) | dinQ ← / → arsR | UV‑inducible membrane toxin, DinQ‑AgrB type I toxin‑antitoxin system/arsenical resistance operon transcriptional repressor; autorepressor |
| RA | 3,686,929 | G→T | Q749K (CAG→AAG) | bcsC ← | cellulose synthase subunit |
| RA | 3,727,880 | T→C | intergenic (‑132/+37) | yiaB ← / ← xylB | YiaAB family inner membrane protein/xylulokinase |
| RA | 3,783,402 | A→G | V87A (GTC→GCC) | gpsA ← | glycerol‑3‑phosphate dehydrogenase (NAD+) |
| RA | 3,828,936 | T→C | intergenic (‑271/‑9) | gltS ← / → xanP | glutamate transporter/xanthine permease |
| RA | 3,853,909 | A→G | intergenic (+267/‑13) | tisB → / → emrD | toxic membrane persister formation peptide, LexA‑regulated/multidrug efflux system protein |
| RA | 3,859,191 | T→C | D309G (GAT→GGT) | yidK ← | putative transporter |
| RA | 3,910,662 | A→T | D288E (GAT→GAA) | pstS ← | phosphate ABC transporter periplasmic binding protein |
| RA | 3,945,528 | T→C | noncoding (1825/2904 nt) | rrlC → | 23S ribosomal RNA of rrnC operon |
| RA | 3,950,468 | G→T | intergenic (+48/‑39) | ilvL → / → ilvX | ilvG operon leader peptide/uncharacterized protein |
| RA | 3,965,820 | G→A | A20A (GCG→GCA) | trxA → | thioredoxin 1 |
| RA | 3,971,690 | A→C | Q144P (CAG→CCG) | wecC → | UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase |
| RA | 3,982,684 | (C)8→9 | noncoding (79/87 nt) | leuT → | tRNA‑Leu |
| RA | 4,168,540 | T→A | intergenic (+93/‑101) | gltT → / → rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon |
| RA | 4,235,689 | +A | intergenic (+282/‑217) | pgi → / → yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| MC JC | 4,242,942 | Δ66 bp | coding (510‑575/891 nt) | malG ← | maltose transporter subunit |
| RA | 4,251,287 | T→C | pseudogene (327/1323 nt) | yjbI → | pseudogene, SopA‑related, pentapeptide repeats‑containing |
| RA | 4,281,967 | T→C | Q370R (CAG→CGG) | yjcF ← | pentapeptide repeats protein |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,479,551 | A→G | intergenic (‑14/‑179) | yjgM ← / → yjgN | GNAT family putative N‑acetyltransferase/DUF898 family inner membrane protein |
| RA | 4,490,055 | T→G | E3D (GAA→GAC) | yjgR ← | DUF853 family protein with NTPase fold |
| RA | 4,551,633 | A→G | intergenic (‑337/‑3) | gntP ← / → uxuA | fructuronate transporter/mannonate hydrolase |
| RA | 4,555,796 | (T)5→4 | coding (525/831 nt) | yjiC ← | uncharacterized protein |
| RA | 4,572,919 | A→T | pseudogene (506/1503 nt) | yjiT → | pseudogene |
| RA | 4,615,859 | T→G | T403P (ACC→CCC) | yjjI ← | DUF3029 family protein, putative glycine radical enzyme |
| RA | 4,616,491 | T→C | D192G (GAT→GGT) | yjjI ← | DUF3029 family protein, putative glycine radical enzyme |
| RA | 4,631,700 | T→C | L323P (CTT→CCT) | slt → | lytic murein transglycosylase, soluble |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3423710–3424234 | 3424590–3424238 | 5–881 | 23 [20] | [22] 23 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 9 (0.170) | 31 (0.690) | 27/166 | 0.9 | 80.0% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 8 (0.180) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 9 (0.170) | 44 (0.980) | 39/166 | 0.2 | 85.0% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 8 (0.180) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 62 (1.210) | 46/190 | 0.1 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||