Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I0 R1
|
175 |
91.2 |
4812830 |
94.5% |
4548124 |
99.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,248,041 |
G→T |
20.9% |
G90V (GGG→GTG) |
yqjA → |
general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,248,041 | 0 | G | T | 20.9%
| 216.9
/ 55.3
| 101 | G90V (GGG→GTG) | yqjA | general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter |
| Reads supporting (aligned to +/- strand): ref base G (34/46); new base T (10/11); total (44/57) |
| Fisher's exact test for biased strand distribution p-value = 8.05e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.87e-01 |
Only 100 of 107 total aligned reads displayed.
CGGCGTGTTGATTGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATAAACACGGTT > NC_000913/3247943‑3248139
|
cGGCGTGTTGATTGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAgggg < 2:2278762/100‑1 (MQ=255)
cGGCGTGTTGATTGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAgggg > 1:1088845/1‑100 (MQ=255)
cGGCGTGTTGATTGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAgggg < 1:605998/100‑1 (MQ=255)
gtgtTGATTGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGAt < 1:1787118/100‑1 (MQ=255)
aTTGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTgg > 1:192791/1‑100 (MQ=255)
ttGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTggg < 1:720367/100‑1 (MQ=255)
ttGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTggg > 1:400554/1‑100 (MQ=255)
tGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGc < 1:850801/100‑1 (MQ=255)
tGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGc < 1:1789018/100‑1 (MQ=255)
tGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGc < 2:302201/100‑1 (MQ=255)
tGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGc < 2:1486611/100‑1 (MQ=255)
tGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGc < 1:1827920/100‑1 (MQ=255)
gCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCa > 1:613176/1‑100 (MQ=255)
gCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCa > 1:179690/1‑100 (MQ=255)
gCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCa > 1:1647069/1‑100 (MQ=255)
gCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCa > 1:567758/1‑100 (MQ=255)
cGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGTTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCaa > 1:1841672/1‑100 (MQ=255)
cGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCaa > 2:2264313/1‑100 (MQ=255)
cGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGCCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCa > 2:666103/1‑99 (MQ=255)
aaGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATAc > 1:811997/1‑100 (MQ=255)
aaGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATAc > 1:21052/1‑100 (MQ=255)
cgcgATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCg < 1:818993/99‑1 (MQ=255)
cgcgATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGc > 1:237262/1‑100 (MQ=255)
gcgATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCa > 1:1374919/1‑100 (MQ=255)
cgATGGGCTATCCGCAAACGATTCTGTTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCAc < 1:803275/100‑1 (MQ=255)
gATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCAcc > 2:522984/1‑100 (MQ=255)
tGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGt < 1:1474048/100‑1 (MQ=255)
gggCTATCCGCAAACGATTCTGCTGCTGCCCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGGTGGCTGGGCAATACCCGCACCTTa > 1:1945843/1‑100 (MQ=255)
gggCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTa < 2:1752297/100‑1 (MQ=255)
gCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACa > 1:2188402/1‑100 (MQ=255)
aTCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACaaaa > 2:706692/1‑100 (MQ=255)
ccGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACt > 2:1607009/1‑100 (MQ=255)
ccGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACt > 2:1946929/1‑100 (MQ=255)
ccGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACt < 1:2183587/100‑1 (MQ=255)
cGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTg > 1:786273/1‑100 (MQ=255)
gcgaaCGATTCTGCGGGTGAGCGTTGCCGCCAGCCTCGGCTGCTGGGGCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACt < 2:1886880/95‑1 (MQ=255)
gCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTg < 1:123676/99‑1 (MQ=255)
cAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGc < 1:1420339/100‑1 (MQ=255)
aaaCGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCt < 2:1770130/100‑1 (MQ=255)
aaaCGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCt < 2:337568/100‑1 (MQ=255)
aaCGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTa < 2:765294/100‑1 (MQ=255)
aaCGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTa > 2:1176947/1‑100 (MQ=255)
aCGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTAt < 1:1441936/100‑1 (MQ=255)
cGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAGAACTGGCTAtc < 2:1257947/100‑1 (MQ=255)
cGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTAtc > 1:1339008/1‑100 (MQ=255)
aTTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTAtctc < 1:1605491/100‑1 (MQ=255)
aTTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTAtctc < 2:443189/100‑1 (MQ=255)
ttCTGCTGCTTACCGTTGCCGCCAGCTTCTGCTGCTGGGTCAGCTATATCCAGGTGCGATGGCTGGTCAATACCCGCACCGTACAAAACTGGCTATCTCa < 2:1574351/100‑1 (MQ=255)
ttCTGCTGCTGACCGTTGCCGCTAGTTTCGGTTGCTGGGTTAGCTATATTCAGGGGCGATGGCTGGGGAATAGGCGCACCGTACAAAACTGGGTAtttta > 2:1997893/1‑96 (MQ=255)
ttCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCa > 2:1919755/1‑100 (MQ=255)
ttCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCa < 2:1024186/100‑1 (MQ=255)
tCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCAt < 2:1012471/100‑1 (MQ=255)
tCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCAt < 1:273888/100‑1 (MQ=255)
ccgatcttgACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACAAAAAAAAAAAAAAACTGGCTATCTCAtt < 2:1858507/93‑1 (MQ=255)
ctgctgACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGAAGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTAc > 2:2105433/1‑100 (MQ=255)
gctgACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATATAATTTAccc > 1:1393767/1‑100 (MQ=255)
ctgACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCcg > 2:1108757/1‑100 (MQ=255)
tgACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCAttagatcgg > 1:1858528/1‑93 (MQ=255)
gACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCcgcg > 1:1018771/1‑100 (MQ=255)
ccGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTAGCTCATTTACCCGCGCa > 1:2286357/1‑100 (MQ=255)
cGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACACAACTGGCTATCTCATTTACCCACGCAt > 1:35474/1‑100 (MQ=255)
gTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCAtt < 1:1791734/100‑1 (MQ=255)
tGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTat < 2:1088835/100‑1 (MQ=255)
gccgccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatc < 1:2392005/100‑1 (MQ=255)
ccgccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatca > 1:1775302/1‑100 (MQ=255)
ccgccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatca < 1:1245548/100‑1 (MQ=255)
ccgccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatca > 2:27634/1‑100 (MQ=255)
ccgccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatca < 2:1866639/100‑1 (MQ=255)
ccgccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatca < 2:1446081/100‑1 (MQ=255)
ccgccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAAGACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatca < 1:2303094/100‑1 (MQ=255)
cgccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATAACCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatcat > 1:2399087/1‑100 (MQ=255)
gccAGCCTCGGCTGCTGGGTCATCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatcatn < 1:2003121/100‑2 (MQ=255)
gccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatcatc < 1:1946951/100‑1 (MQ=255)
gccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatcatc > 2:2096422/1‑100 (MQ=255)
ccAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCATACAAAACTGGCTATCTCCTTTACCCGCGCATTAtcatca > 2:1366308/1‑100 (MQ=255)
cAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCaa < 1:522987/100‑1 (MQ=255)
agtttCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCATCGTACAAAACTGGCTATCTCATTTACCCGCGCATTatca < 1:167765/91‑1 (MQ=255)
tgctgGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACAcc < 1:1016574/100‑1 (MQ=255)
tgctgGGTCAGCTATATTCAGGGGCGAAGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACAcc < 1:2105456/100‑1 (MQ=255)
gctgGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCa > 2:50616/1‑100 (MQ=255)
ctgGGTCAGCTATATTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCAt > 2:31903/1‑100 (MQ=255)
ctgGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCAt > 1:1795915/1‑100 (MQ=255)
tgGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATc < 1:1144605/100‑1 (MQ=255)
gggTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCGATCTCATTTACCCGCGCAACACCATCAACGCGCACACCAt > 2:1500137/1‑98 (MQ=255)
tCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCtttt > 2:857940/1‑100 (MQ=255)
tCAGCTATATTAAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCtttt < 2:4490/100‑1 (MQ=255)
cAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCttttt < 1:1607642/100‑1 (MQ=255)
aGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTc < 2:1872617/100‑1 (MQ=255)
aGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTc < 1:2304296/100‑1 (MQ=255)
gCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCa < 2:1792377/100‑1 (MQ=255)
tataTTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCa < 2:1632015/98‑1 (MQ=255)
atatTCAGGTGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATaa < 2:21051/100‑1 (MQ=255)
atatTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATaa > 2:1164482/1‑100 (MQ=255)
ttgaGGGGCGATGGCTGGTCAATACCCGCACCGTACAAAACTGTCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATAAaca < 2:550941/97‑1 (MQ=255)
ttCAGGGGCGATGGCTGGGCAATACAAGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTACCATCCACGCGCACACCATCTTTTTCATAAaca > 2:412946/1‑100 (MQ=255)
tCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATAAacac < 1:558649/100‑1 (MQ=255)
aGGGGGGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATAAACACg < 2:1039426/99‑1 (MQ=255)
aGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACGCCATCTTTTTCATAAACACgg < 2:1720628/100‑1 (MQ=255)
gggCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATAAACACGGtt < 1:63375/100‑1 (MQ=255)
gggCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATAAACACGGtt < 1:1024523/100‑1 (MQ=255)
|
CGGCGTGTTGATTGCGAAAGGCGCGATGGGCTATCCGCAAACGATTCTGCTGCTGACCGTTGCCGCCAGCCTCGGCTGCTGGGTCAGCTATATTCAGGGGCGATGGCTGGGCAATACCCGCACCGTACAAAACTGGCTATCTCATTTACCCGCGCATTATCATCAACGCGCACACCATCTTTTTCATAAACACGGTT > NC_000913/3247943‑3248139
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
