Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F133 I1 R1
|
102 |
83.9 |
4092546 |
96.1% |
3932936 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,490,088 |
A→G |
G31G (GGT→GGC) |
argD ← |
bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,490,088 | 0 | A | G | 96.0%
| 255.8
/ ‑0.5
| 77 | G31G (GGT→GGC) | argD | bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base A (1/2); new base G (36/37); total (38/39) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
CCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGACCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCATCTCA > NC_000913/3489991‑3490184
|
ccAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGcc > 2:490908/1‑100 (MQ=255)
aGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCtt > 1:1712759/1‑100 (MQ=255)
aGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCtt < 2:435075/100‑1 (MQ=255)
gcgcAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCttt > 1:1534197/1‑100 (MQ=255)
gcgcAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCttt < 1:1240230/100‑1 (MQ=255)
gcgcAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCttt < 2:1284861/100‑1 (MQ=255)
cgcAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCtttt > 2:1175530/1‑100 (MQ=255)
cAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTAc < 1:1283008/100‑1 (MQ=255)
cAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTAc > 2:135750/1‑100 (MQ=255)
gcaTGGCACTGGCACACCGCCGTAACTGCAATGCCTCCCGCGAAATCGACATACACCTTGCCTAGCTGATCCCAGATGCGGCTGCCCTGTCCTTTTACCg > 2:1908442/3‑100 (MQ=255)
gATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCgg < 1:212857/100‑1 (MQ=255)
gATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCgg < 1:1911026/100‑1 (MQ=255)
gATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCgg < 1:845280/100‑1 (MQ=255)
gATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCgg > 1:553580/1‑100 (MQ=255)
tGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGaa < 1:1491786/100‑1 (MQ=255)
tGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGaa < 1:122131/100‑1 (MQ=255)
ggCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAAt > 1:1460732/1‑100 (MQ=255)
gCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATa > 2:1681393/1‑100 (MQ=255)
aTGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAAc < 2:1103826/100‑1 (MQ=255)
aTGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAAc < 1:1897282/100‑1 (MQ=255)
gCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAActct < 2:277474/100‑1 (MQ=255)
cccAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAActctn < 2:1414354/100‑2 (MQ=255)
cccAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTg > 2:1530025/1‑100 (MQ=255)
cccAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGACCTTTTACCGGAATAAACTCTg > 2:102448/1‑100 (MQ=255)
gCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAg < 1:961826/100‑1 (MQ=255)
cGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCa < 1:1006319/100‑1 (MQ=255)
tAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATa < 2:1794804/100‑1 (MQ=255)
cTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAAt > 1:72761/1‑100 (MQ=255)
tGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATc < 2:1174011/100‑1 (MQ=255)
cAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCgg < 1:191769/100‑1 (MQ=255)
cAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCgg < 1:1198036/100‑1 (MQ=255)
aTGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCa < 1:314841/100‑1 (MQ=255)
gCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAgg > 2:1566126/1‑100 (MQ=255)
gCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAgg < 2:72127/100‑1 (MQ=255)
gCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTGTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAgg < 2:1255086/100‑1 (MQ=255)
ccACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGa > 2:452582/1‑100 (MQ=255)
aCCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATc < 1:1356642/100‑1 (MQ=255)
cgcgAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACt > 1:1755552/1‑100 (MQ=255)
cgcgAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACt > 2:1284696/1‑100 (MQ=255)
gcgAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACtt < 1:1369295/100‑1 (MQ=255)
cgAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTc < 2:1755538/100‑1 (MQ=255)
aaTCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGACCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATc < 1:102449/100‑1 (MQ=255)
gACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGaaa < 1:336332/100‑1 (MQ=255)
cATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGt < 1:1530034/100‑1 (MQ=255)
tACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcg < 1:1566136/100‑1 (MQ=255)
tACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcg > 2:216161/1‑100 (MQ=255)
tACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcg > 2:140155/1‑100 (MQ=255)
tACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCCTGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTACATCGAAAGTc > 2:1659106/1‑99 (MQ=255)
aCTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcgc > 2:626376/1‑100 (MQ=255)
aCTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcgc < 2:1534188/100‑1 (MQ=255)
ccttgccttgCTGGTCCCAGATTCGGCTGCCCTGGCCTATTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcgcgc > 2:1259622/1‑99 (MQ=255)
ccttgccttgCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGCACAAACTCTGCCGGAGCATCAATCGGCAGGATCACTTCATCGAAAGTcgcgc > 1:1709130/1‑99 (MQ=255)
ccttgccttgCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcgcgcg > 2:971840/1‑100 (MQ=255)
ccttgccttgCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcgcgcg > 2:1847725/1‑100 (MQ=255)
ccttgccttgCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcgcgcg > 1:993427/1‑100 (MQ=255)
ccttgccttgCTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTcgcgcg > 1:514286/1‑100 (MQ=255)
cttgccttgcTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCgt > 2:990866/1‑100 (MQ=255)
cttgccttgcTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCgt < 1:1681406/100‑1 (MQ=255)
tgccttgcTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCgtgt > 2:592192/1‑100 (MQ=255)
cttgcTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAAt < 2:277447/100‑1 (MQ=255)
cttgcTGATCCCAGATTCGGCTGCCCTGACCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAAt < 2:1111641/100‑1 (MQ=255)
ttgcTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAAtt < 1:1175536/100‑1 (MQ=255)
tgcTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTg > 1:1750905/1‑100 (MQ=255)
tgcTGATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTg > 2:413614/1‑100 (MQ=255)
gATCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCtgt > 1:1508102/1‑100 (MQ=255)
aTCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCtgtt < 1:971844/100‑1 (MQ=255)
aTCCCAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCtgtt > 2:785894/1‑100 (MQ=255)
cccAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCtgtttg < 1:140156/100‑1 (MQ=255)
ccAGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCtgtttgt > 2:1532961/1‑100 (MQ=255)
aGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTc < 2:514285/100‑1 (MQ=255)
aGATTCGGCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTc < 1:135751/100‑1 (MQ=255)
ggCTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGc > 1:1681711/1‑100 (MQ=255)
cTGCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCa < 2:1810912/100‑1 (MQ=255)
gCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCAtc > 1:642647/1‑100 (MQ=255)
gCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCAtc > 2:35332/1‑100 (MQ=255)
gCCCTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCAtc > 1:1670290/1‑100 (MQ=255)
cTGGCCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCATCTCa > 1:87162/1‑100 (MQ=255)
|
CCAGCGCAGGATGGCAATGGCCCAACGCCGTAACTGCAATGCCACCCGCGAAATCGACATACTCCTTGCCTTGCTGATCCCAGATTCGGCTGCCCTGACCTTTTACCGGAATAAACTCTGCCGGAGCATAAATCGGCAGGATCACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCATCTCA > NC_000913/3489991‑3490184
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
