Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F133 I1 R1
|
102 |
83.9 |
4092546 |
96.1% |
3932936 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,540,351 |
(A)6→5 |
coding (189/228 nt) |
feoA → |
ferrous iron transporter, protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,540,346 | 0 | A | . | 100.0%
| 341.8
/ NA
| 72 | coding (184/228 nt) | feoA | ferrous iron transporter, protein A |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (40/32); total (40/32) |
CTTGGCATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCAAAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAAT > NC_000913/3540247‑3540439
|
ctTGGCATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCa > 1:51776/1‑100 (MQ=255)
ttGGCATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCaa > 1:1865507/1‑100 (MQ=255)
cATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCaaaaag > 2:1551128/1‑99 (MQ=255)
aTGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCaaaaaga < 1:1548098/100‑3 (MQ=255)
aCCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTgg > 1:442304/1‑100 (MQ=255)
ccTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTgg > 1:1707525/1‑99 (MQ=255)
gCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCtta < 1:762875/100‑1 (MQ=255)
tcctcTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCttatt < 2:938771/100‑1 (MQ=255)
cctcTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCttatta > 1:750431/1‑100 (MQ=255)
cctcTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCttatta < 2:51776/100‑1 (MQ=255)
tctTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGa > 1:317482/1‑100 (MQ=255)
ttttAATGTGTTGCACGTCGCGCCACTCGGCGACCCCATTCATATCGAAACGCGTCGTGTGAACCGGTTATTACGC‑AAAAAGATCTGGCCgcatta > 2:1236014/1‑96 (MQ=255)
tttAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGTGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGt > 1:387551/1‑100 (MQ=255)
tAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTgg > 2:43119/1‑100 (MQ=255)
gtggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTgccagc > 2:1564532/1‑95 (MQ=255)
gtggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGc > 2:2012656/1‑100 (MQ=255)
gtggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGc > 1:1874790/1‑100 (MQ=255)
gtggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTAGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGc < 2:2020326/100‑1 (MQ=255)
tggtgTGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCg > 1:1606473/1‑100 (MQ=255)
tggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCg > 1:1316568/1‑100 (MQ=255)
tggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCg > 1:1174616/1‑100 (MQ=255)
tggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCg > 1:1317107/1‑100 (MQ=255)
ggtgCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCgg > 1:211669/1‑100 (MQ=255)
cgcgTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTc < 2:738185/100‑1 (MQ=255)
cgcgTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTc < 2:750428/100‑1 (MQ=255)
gcgTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTcc < 2:1874773/100‑1 (MQ=255)
gTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTg < 2:317481/100‑1 (MQ=255)
tCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGt > 2:2016138/1‑100 (MQ=255)
tCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGt > 2:534860/1‑100 (MQ=255)
cGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGtt > 2:608581/1‑100 (MQ=255)
cGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGtt > 1:1687871/1‑100 (MQ=255)
cGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGtt < 1:1789671/100‑1 (MQ=255)
gCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGtt > 2:386307/1‑99 (MQ=255)
gCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTa < 1:347419/100‑1 (MQ=255)
gCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTa > 1:444795/1‑100 (MQ=255)
tCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAAt < 1:1948592/100‑1 (MQ=255)
ccACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATa > 2:820406/1‑100 (MQ=255)
ccACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTATCCTGTTAATa > 2:396557/1‑100 (MQ=255)
tCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGt < 2:546566/100‑1 (MQ=255)
cGGCGACCCCATTCATATCGAAACCCGTTGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTg < 2:105954/100‑1 (MQ=255)
cGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTg < 2:1604981/100‑1 (MQ=255)
ggCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGa < 1:408112/100‑1 (MQ=255)
cccATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATaacaa > 1:1378900/1‑100 (MQ=255)
ccATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATaacaac > 1:870945/1‑100 (MQ=255)
cATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAacaaca < 2:1606064/100‑1 (MQ=255)
cATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAacaaca > 1:217798/1‑100 (MQ=255)
cATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAacaaca > 2:1310053/1‑100 (MQ=255)
ttCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAAt > 1:856804/1‑100 (MQ=255)
ttCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAAt > 1:1392145/1‑100 (MQ=255)
cATATCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGa > 2:1195684/1‑100 (MQ=255)
cATATCGAAACCCGTCGCGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGa > 1:334526/1‑100 (MQ=255)
tatCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTTCTGTTAATACGGTGATAACAACAATGa < 1:1479926/98‑1 (MQ=255)
tatCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaa < 1:1564542/100‑1 (MQ=255)
atCGAAACTCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAATCGGTTTCCTGTTAATACGGTGATAACAACAATGaaaa < 2:1243417/100‑1 (MQ=255)
atCGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaaa < 2:1217187/100‑1 (MQ=255)
cGAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGaaaaaa > 1:523909/1‑100 (MQ=255)
gAAACCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAAt > 2:1623259/1‑100 (MQ=255)
aaaCCCGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAAtt > 1:1463254/1‑100 (MQ=255)
cccGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAAc < 1:1114868/100‑1 (MQ=255)
ccGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAAcc > 1:1481373/1‑100 (MQ=255)
ccGTCGTGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAAcc < 1:868851/100‑1 (MQ=255)
gtcgtGTGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCAt > 1:1565793/1‑100 (MQ=255)
gtgtGAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTgg < 1:27162/100‑1 (MQ=255)
tgtgAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGc < 2:211668/100‑1 (MQ=255)
tgtgAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGc < 1:1509612/100‑1 (MQ=255)
gtgAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCt < 2:1314894/100‑1 (MQ=255)
tgAGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTaagccaatggtt < 1:598470/100‑11 (MQ=255)
tgAGCCTGATATTACGC‑AAAAAGATCTGGCCTTATTAGAAGAGGAAACGGTTTCCTGTTAATACGGTGATAAAAAAAAAAAAAAAATTAACCATTGGCt < 2:444794/99‑1 (MQ=255)
aGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTaa < 2:334525/100‑1 (MQ=255)
aGCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTaa < 1:43119/100‑1 (MQ=255)
gCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAAt > 1:305205/1‑100 (MQ=255)
gCCTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAAt > 1:1071645/1‑100 (MQ=255)
ccTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAAtt < 2:1317099/100‑1 (MQ=255)
ccTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAAtt < 2:1316560/100‑1 (MQ=255)
ccTGGTATTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAAtt > 2:875895/1‑100 (MQ=255)
aTTACGC‑AAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAAt > 1:1887998/1‑100 (MQ=255)
|
CTTGGCATGTTACCTGGCTCCTCTTTTAATGTGGTGCGCGTCGCTCCACTCGGCGACCCCATTCATATCGAAACCCGTCGTGTGAGCCTGGTATTACGCAAAAAAGATCTGGCCTTATTAGAAGTGGAAGCGGTTTCCTGTTAATACGGTGATAACAACAATGAAAAAATTAACCATTGGCTTAATTGGTAAT > NC_000913/3540247‑3540439
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
