Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F133 I0 R1 200 171.4 8351354 94.3% 7875326 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,365,836 T→C 74.4% intergenic (‑216/‑92) ais ← / → arnB putative LPS core heptose(II)‑phosphate phosphatase/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,365,8360TC74.4% 251.3 / 85.7 144intergenic (‑216/‑92)ais/arnBputative LPS core heptose(II)‑phosphate phosphatase/uridine 5'‑(beta‑1‑threo‑pentapyranosyl‑4‑ulose diphosphate) aminotransferase, PLP‑dependent
Reads supporting (aligned to +/- strand):  ref base T (17/20);  new base C (50/56);  total (68/76)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

Only 100 of 145 total aligned reads displayed.

CAAAATTTTGCCAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAGCAATGTCA  >  NC_000913/2365739‑2365933
                                                                                                  |                                                                                                  
  aaaaTTTGGCAAATGTCAAGGCCTAAATAAGAAAAAATATAAAAAGTTCAATATTTACGTCGAATATGAGTTTCTTAAGGTTAAGTTAATATTCTAccc                                                                                                  <  2:1248375/99‑1 (MQ=255)
  aaaTTTTGCCAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCtt                                                                                                >  1:3802452/1‑100 (MQ=255)
     ttttGCCAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTaaa                                                                                             <  2:1184652/100‑1 (MQ=255)
     ttttGCCAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTaaa                                                                                             >  1:1695190/1‑100 (MQ=255)
     ttttGCCAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTaaa                                                                                             <  1:3443052/100‑1 (MQ=255)
      tatgacAAATG‑CAAAGACTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTaaaa                                                                                            <  2:3985594/95‑1 (MQ=255)
       ttGCTAAATG‑CAAAAAAAAAAAAAAAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTaa                                                                                              <  2:1776148/97‑1 (MQ=255)
        tGCCAAATG‑CAAAGCCTAAATAAAAAAAAAAATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAAtt                                                                                          <  2:2210764/100‑1 (MQ=255)
         gCCAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAAttt                                                                                         >  2:1556009/1‑100 (MQ=255)
         gCCAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGATAAGTTCAGATTCTACCCTTAAAAttt                                                                                         >  1:3261848/1‑100 (MQ=255)
           cAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCg                                                                                       >  1:978593/1‑100 (MQ=255)
           cAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCg                                                                                       >  2:2607908/1‑100 (MQ=255)
            aaaTG‑CAAAGCGTAAATAAGAAAAAATATAAAAATGTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTc                                                                                        <  2:1173280/98‑1 (MQ=255)
            aaaTG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGc                                                                                      <  1:88618/100‑1 (MQ=255)
              aTG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTc                                                                                    >  2:3208297/1‑100 (MQ=255)
               tG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTcc                                                                                   <  2:987312/100‑1 (MQ=255)
                g‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCa                                                                                  <  1:4094026/100‑1 (MQ=255)
                g‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTATAAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCa                                                                                  >  2:2440110/1‑100 (MQ=255)
                  cAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCaa                                                                                 >  2:152643/1‑100 (MQ=255)
                  cAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCaa                                                                                 >  1:604659/1‑100 (MQ=255)
                     aGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATg                                                                              <  1:2843601/100‑1 (MQ=255)
                      gCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATgg                                                                             <  2:84765/100‑1 (MQ=255)
                      gCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATgg                                                                             <  1:2512441/100‑1 (MQ=255)
                       ccTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGc                                                                            <  1:3255412/100‑1 (MQ=255)
                       ccTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGc                                                                            <  2:2719661/100‑1 (MQ=255)
                        cTAAATAAGAAAAAATATAAAAATTTCACAATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGc                                                                            <  2:1993823/99‑1 (MQ=255)
                         tAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATgg                                                                             <  2:278148/97‑1 (MQ=255)
                          aaaTAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCaaa                                                                         >  1:1462243/1‑100 (MQ=255)
                             tAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAata                                                                      <  2:2712698/100‑1 (MQ=255)
                              aaGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAatat                                                                     >  2:503934/1‑100 (MQ=255)
                               aGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAatat                                                                     <  2:147832/99‑1 (MQ=255)
                               aGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAAtata                                                                    <  2:2126146/100‑1 (MQ=255)
                                gAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAATGTTAAGTTAATATTATACCCTTAAAATTTCGCTCCAAATGGCAAAATATac                                                                   <  2:1476128/100‑1 (MQ=255)
                                gAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATac                                                                   <  1:3855418/100‑1 (MQ=255)
                                gAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATac                                                                   >  1:110199/1‑100 (MQ=255)
                                 aaaaaaTATAAAAATTTCAATATTTACGTCTAATATTAGTTTTTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATaca                                                                  <  2:2920320/100‑1 (MQ=255)
                                 aaaaaaTATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATaca                                                                  <  1:3861688/100‑1 (MQ=255)
                                   aaaaTATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATAcac‑a                                                               <  1:284656/100‑1 (MQ=255)
                                     aaTATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACac‑aac                                                             >  1:670126/1‑100 (MQ=255)
                                         taAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACActc                                                         >  2:1563802/1‑100 (MQ=255)
                                         taAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACActc                                                         >  1:3493913/1‑100 (MQ=255)
                                         taAAAATTTCAATATTTACGCCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACAct                                                          >  2:2547340/1‑99 (MQ=255)
                                            aaaTTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCttt                                                      <  1:1955672/100‑1 (MQ=255)
                                            aaaTTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCttt                                                      <  2:4082026/100‑1 (MQ=255)
                                             aaTTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTta                                                     <  2:1036462/100‑1 (MQ=255)
                                               tttCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTtata                                                   <  2:931317/100‑1 (MQ=255)
                                               ttgcAAGATTTACATTGAATATTAATTTCTTAAGGTTAAGTTAATATTCTATACTAAAAATTACGCTCCAAGTAGCAAAATATACAA‑AACACGCttttt                                                    <  2:3340045/96‑3 (MQ=255)
                                                ttCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAg                                                  <  2:497382/100‑1 (MQ=255)
                                                 tCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGc                                                 <  2:3201657/100‑1 (MQ=255)
                                                   aaTATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCaa                                               >  1:2121298/1‑100 (MQ=255)
                                                   aaTATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCaa                                               >  2:768876/1‑100 (MQ=255)
                                                    atatTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCaaa                                              <  2:2965973/100‑1 (MQ=255)
                                                    atatTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCaaa                                              <  2:2966003/100‑1 (MQ=255)
                                                       tttACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAatat                                           >  1:1512281/1‑100 (MQ=255)
                                                        ttACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAAtata                                          <  2:369048/100‑1 (MQ=255)
                                                         tACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATaa                                         >  1:1020142/1‑100 (MQ=255)
                                                          aCGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAg                                        <  2:212152/100‑1 (MQ=255)
                                                            gTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTg                                      <  2:3059537/100‑1 (MQ=255)
                                                            gTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTg                                      <  1:240291/100‑1 (MQ=255)
                                                             tCTAATATTAGTTTCTTAAGGTTAAGTTAATATCCTACCCTTAAAATTTCACTCCAAATGACAAAATATACAC‑AACACTCTTTATACAAAATATaa                                         >  2:2366121/1‑96 (MQ=255)
                                                              cTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGa                                    >  1:1009412/1‑100 (MQ=255)
                                                              cTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGa                                    >  1:3689905/1‑100 (MQ=255)
                                                              cTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGa                                    <  1:224378/100‑1 (MQ=255)
                                                               tAATATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGAc                                   >  1:2481982/1‑100 (MQ=255)
                                                                aaTATTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGATCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACa                                  <  2:2013796/100‑1 (MQ=255)
                                                                 atatTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAg                                 <  2:1338234/100‑1 (MQ=255)
                                                                 atatTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAg                                 <  1:2391553/100‑1 (MQ=255)
                                                                  tatTAGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAgg                                <  1:4036387/100‑1 (MQ=255)
                                                                      aGTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTAtt                            <  1:22146/100‑1 (MQ=255)
                                                                       gTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTc                           <  1:4123705/100‑1 (MQ=255)
                                                                       gTTTCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTc                           >  1:3735863/1‑100 (MQ=255)
                                                                         ttCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCaa                         >  2:1782087/1‑100 (MQ=255)
                                                                         ttCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCaa                         >  2:302820/1‑100 (MQ=255)
                                                                          tCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAAt                        >  2:2780492/1‑100 (MQ=255)
                                                                          tCTTAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAAt                        >  2:1530220/1‑100 (MQ=255)
                                                                            ttAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATgg                      <  1:2547355/100‑1 (MQ=255)
                                                                             tAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGc                     >  1:1599917/1‑100 (MQ=255)
                                                                             tAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGc                     <  2:3088189/100‑1 (MQ=255)
                                                                             tAAGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGc                     >  1:2641492/1‑100 (MQ=255)
                                                                              aaGGTTAAGTTAATATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCg                    <  1:4652/100‑1 (MQ=255)
                                                                                ggTTACGTTAATATTCTACCCTTAAACTTTCGCTTCAAAAGTCAAACTATACACAAACAC‑CTTTATAGCAAATATAAGTCGACAGGTATTCAATGGCg                    >  2:699522/1‑98 (MQ=255)
                                                                                 gttaagttaaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCggaa                 >  1:479899/1‑100 (MQ=255)
                                                                                  ttaagttaaTATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCggaag                <  2:1425740/100‑1 (MQ=255)
                                                                                  ttaagttaaTATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCggaag                >  1:1523443/1‑100 (MQ=255)
                                                                                  ttaagttaaTATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCggaag                <  1:2076237/100‑1 (MQ=255)
                                                                                    aagttaaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCggaagga              <  2:1062018/100‑1 (MQ=255)
                                                                                     agttaaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCggaaggaa             >  2:2885346/1‑100 (MQ=255)
                                                                                     agttaaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCggaaggaa             >  1:2178441/1‑100 (MQ=255)
                                                                                     agttaaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATCCAATGGCggaaggaa             >  1:4118142/1‑100 (MQ=255)
                                                                                     agttaaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGAGAACAGGTATTCAATGGCggaaggaa             >  2:251588/1‑100 (MQ=255)
                                                                                      gttaaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGaaa            >  2:676440/1‑100 (MQ=255)
                                                                                      gttaaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGaaa            <  1:2068002/100‑1 (MQ=255)
                                                                                        taaTATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAg          <  2:3802423/100‑1 (MQ=255)
                                                                                        taaTATTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAg          >  2:430646/1‑100 (MQ=255)
                                                                                         aaTATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAGc         >  1:57211/1‑100 (MQ=255)
                                                                                          atatTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAGCa        >  2:1952450/1‑100 (MQ=255)
                                                                                           tatTCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAGCaa       <  1:2664675/100‑1 (MQ=255)
                                                                                             ttCTACCCTTAAAATTTCGCTCCACATGGCAAAATATACAC‑AACACTCCTTATCGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAGCAATg     <  1:2267119/100‑1 (MQ=255)
                                                                                             ttCTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAGCAATg     >  2:3474772/1‑100 (MQ=255)
                                                                                               cTACCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAGCAATGTc   >  2:2189748/1‑100 (MQ=255)
                                                                                                  |                                                                                                  
CAAAATTTTGCCAAATG‑CAAAGCCTAAATAAGAAAAAATATAAAAATTTCAATATTTACGTCTAATATTAGTTTCTTAAGGTTAAGTTAATATTCTATCCTTAAAATTTCGCTCCAAATGGCAAAATATACAC‑AACACTCTTTATAGCAAATATAAGTGGACAGGTATTCAATGGCGGAAGGAAAAGCAATGTCA  >  NC_000913/2365739‑2365933

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A