Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F133 I0 R1 200 171.4 8351354 94.3% 7875326 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,751,923 T→C 81.7% G43G (GGT→GGC)  recN → recombination and repair protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,751,9230TC81.7% 258.7 / 39.6 113G43G (GGT→GGC) recNrecombination and repair protein
Reads supporting (aligned to +/- strand):  ref base T (11/10);  new base C (45/47);  total (56/57)
Fisher's exact test for biased strand distribution p-value = 8.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 113 total aligned reads displayed.

CTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGC  >  NC_000913/2751826‑2752021
                                                                                                 |                                                                                                  
cTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCt                                                                                                  >  1:58184/1‑100 (MQ=255)
 tATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCtt                                                                                                 >  1:1634/1‑100 (MQ=255)
 tATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCtt                                                                                                 <  1:1179538/100‑1 (MQ=255)
  aTCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCttt                                                                                                >  1:3783754/1‑100 (MQ=255)
   tcgttcgtGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTg                                                                                               <  2:1591594/100‑1 (MQ=255)
   tcgttcgtGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTg                                                                                               <  2:1982763/100‑1 (MQ=255)
     gttcgtGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGtc                                                                                             >  1:551929/1‑100 (MQ=255)
         gtGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCgg                                                                                         >  1:1482742/1‑100 (MQ=255)
          tGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCggt                                                                                        <  1:1183232/100‑1 (MQ=255)
           gAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCggtg                                                                                       >  1:3276141/1‑100 (MQ=255)
           gAGCTTGAGAGTGATTGTCATTGCGGTATGTCCTTAATAACTGGCGAGCCCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCggtg                                                                                       <  2:434425/100‑1 (MQ=255)
             gCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCggtggt                                                                                     >  2:645162/1‑100 (MQ=255)
              cTTGAGATTGATTTTCATAGCGGCATGACCTTAATAACTGGCGAGACCGGCGCGGGTAAATCGATTGCAATAGATGCCCTCGGCCTTTGTCTCggtggt                                                                                     <  2:3096760/99‑1 (MQ=255)
              cTTGAGATTGATTTTCATAGCGGCATGACCGTCATAATTGGCTACACCGGCGCGGGCACATCTATTGCACTAGAGGCCCTCGGTCTTTGTCTCggtg                                                                                       >  2:1708623/1‑97 (MQ=255)
              cTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTc                                                                                    >  2:2486619/1‑100 (MQ=255)
               ttGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTcg                                                                                   >  2:2564308/1‑100 (MQ=255)
                 gagaTTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTcgcg                                                                                 <  1:3505292/100‑1 (MQ=255)
                  agaTTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTcgccg                                                                                >  2:2473047/1‑98 (MQ=255)
                   gattgattTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCt                                                                               >  1:663382/1‑100 (MQ=255)
                   gattgattTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAAGCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCt                                                                               >  1:1868692/1‑100 (MQ=255)
                     ttgattTTCTTCGCGGGATGATCGTAATAACTGGCGTGGCTGGCACGGGTAAATCTGTTGCAATAGATGCCCTCGGCTTTTGTCTCGGTGGTCGCGCt                                                                               <  2:2630773/98‑1 (MQ=255)
                      tgatcTTCATAGCGGCATGATCGTTATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGTCCTTTGTCTCGGTGGTCGCGCt                                                                               <  2:2420781/97‑1 (MQ=255)
                       gattTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAg                                                                           >  1:3205236/1‑100 (MQ=255)
                       gattTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCCCt                                                                               >  2:3156720/1‑96 (MQ=255)
                       gattTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCCCt                                                                               >  2:314186/1‑96 (MQ=255)
                        attTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTcgc                                                                                  >  2:3317645/1‑92 (MQ=255)
                        attTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGc                                                                          >  1:3922795/1‑100 (MQ=255)
                          tttCATAGCGGCATGACCGTAATAACTGGCGAGCCCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTcggcgt                                                                               >  2:2731386/1‑89 (MQ=255)
                           ttCATAGCCGCATGACCGCAATAACTAGCGAGACCGGCGCGGGTAAACCTATTGCAATAGATGCCCTCGGCCGTTGTCTCGGTTGTCGCGCTGAAGCCg                                                                        <  2:722301/99‑1 (MQ=255)
                            tCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGAc                                                                      <  1:2520078/100‑1 (MQ=255)
                             cATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGAc                                                                      <  1:2519830/99‑1 (MQ=255)
                             cATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACa                                                                     >  1:3006355/1‑100 (MQ=255)
                              aTAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACAt                                                                    <  1:1106862/100‑1 (MQ=255)
                                aGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATgg                                                                  <  1:1813780/100‑1 (MQ=255)
                                 gCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATgg                                                                  <  1:1024120/99‑1 (MQ=255)
                                    gCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCg                                                              <  2:3783725/100‑1 (MQ=255)
                                     cATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCg                                                              <  2:734672/99‑1 (MQ=255)
                                      aTGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTa                                                            >  1:80665/1‑100 (MQ=255)
                                      aTGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTgn                                                               <  2:1196669/97‑2 (MQ=255)
                                       tGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTAc                                                           <  1:2960257/100‑1 (MQ=255)
                                        gACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTAcc                                                          >  1:4108786/1‑100 (MQ=255)
                                           cGTAATATCTGGCGTGACCGGCGCGGGTAAATCTATTGCAATAGATGCTCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGgc                                                       <  1:1135250/100‑1 (MQ=255)
                                            gTAATAACTGGCGGTACCGGCGCGGGTAAATCTATTGCCATAGATGCCCTCGGCCTTTGTATCGGTGGTCGCGCTGAAGCCGACACGGTGCGTACCGgc                                                       <  2:2571815/99‑1 (MQ=255)
                                            gTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGgcg                                                      >  1:2459846/1‑100 (MQ=255)
                                            gTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGgcg                                                      >  1:1824249/1‑100 (MQ=255)
                                              aataaCTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCgct                                                    <  1:2301680/100‑1 (MQ=255)
                                               ataaCTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCgctg                                                   <  1:3296535/100‑1 (MQ=255)
                                               ataaCTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCgctg                                                   <  1:1929239/100‑1 (MQ=255)
                                                tatcTGGCGAGCCCGGCGCGGGTAATTCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCgctg                                                   <  2:2196630/96‑1 (MQ=255)
                                                taaCTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCgctgc                                                  >  1:3034515/1‑100 (MQ=255)
                                                taaCTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCgctgc                                                  >  1:2717971/1‑100 (MQ=255)
                                                taaCTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTAGCCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCgctgc                                                  >  1:1843322/1‑100 (MQ=255)
                                                 aaCTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCgctgct                                                 >  1:557245/1‑100 (MQ=255)
                                                   cTGGCGAGCCCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTc                                                <  2:3436459/99‑1 (MQ=255)
                                                    tGGCGAGACCGGTGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTcgc                                              <  2:3838036/100‑1 (MQ=255)
                                                     ggggagaTCGGCGCGGGTAAATCTATTGCAGTAGATGCCCTCGGCCTTTGGCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGgcgc                                                     <  2:3385969/89‑1 (MQ=255)
                                                     ggCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTcgcg                                             >  1:4115947/1‑100 (MQ=255)
                                                       cGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGGTGAAGCCAACATAATGCGTACCGGCGCTGCTCGCGCt                                           >  2:3218268/1‑100 (MQ=255)
                                                       cGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCt                                           >  1:2371586/1‑100 (MQ=255)
                                                         agaCCGGCGCGGGTTAAGCTTTTGCAAGAGATGCCCTCGGTCTTGGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTg                                          <  2:922042/99‑1 (MQ=255)
                                                          gaCCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGAc                                        >  1:538969/1‑100 (MQ=255)
                                                           aCCTGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTTGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGAcc                                       <  2:173471/100‑1 (MQ=255)
                                                            ccGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTTTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGAcc                                       >  1:3652544/1‑99 (MQ=255)
                                                            ccGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCt                                      >  1:4002630/1‑100 (MQ=255)
                                                            ccGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCt                                      >  1:3589338/1‑100 (MQ=255)
                                                               gcgcGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCtgtg                                   <  1:2418666/100‑1 (MQ=255)
                                                                   gagggcaTCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGcc                               >  1:699638/7‑100 (MQ=255)
                                                                    ggTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGcc                               <  2:2986463/99‑1 (MQ=255)
                                                                    ggTAAATCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGccc                              >  1:3935635/1‑100 (MQ=255)
                                                                     gTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCCGTATAATCAACAAGAAGAGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCg                             >  2:3502153/1‑100 (MQ=255)
                                                                      ggcaTCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTACGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGt                            >  1:2923800/4‑100 (MQ=255)
                                                                        aaTCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGttt                          >  1:983168/1‑100 (MQ=255)
                                                                         aTCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGtttt                         <  1:1007595/100‑1 (MQ=255)
                                                                         aTCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGtttt                         >  1:2415315/1‑100 (MQ=255)
                                                                         aTCTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGtttt                         <  1:2578353/100‑1 (MQ=255)
                                                                           cTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTtc                       >  1:1638825/1‑100 (MQ=255)
                                                                           cTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTtc                       <  1:2468284/100‑1 (MQ=255)
                                                                           cTATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTtc                       <  1:3965414/100‑1 (MQ=255)
                                                                            tATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTtct                      >  1:1058776/1‑100 (MQ=255)
                                                                            tATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTtct                      <  1:2226335/100‑1 (MQ=255)
                                                                            tATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTtct                      >  1:2766019/1‑100 (MQ=255)
                                                                            tATTGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCCGTATCACCAACAAGATAAGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTtct                      >  2:1328199/1‑100 (MQ=255)
                                                                              ttGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTctct                    <  2:3034497/100‑1 (MQ=255)
                                                                               tGCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTg                   <  2:2459633/100‑1 (MQ=255)
                                                                                gCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGa                  >  1:977400/1‑100 (MQ=255)
                                                                                gCAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCCGTATCATTAAAAAAAAAAGTACCGGCGCTGCCCGCGCTGACCTGTACGCACGTTTTTCTCTGa                  >  2:76942/1‑100 (MQ=255)
                                                                                 cAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGGTGTAACTGACATAATACGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGaa                 >  2:1186032/1‑100 (MQ=255)
                                                                                 cAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGaa                 <  1:1977029/100‑1 (MQ=255)
                                                                                 cAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGaa                 <  1:1259486/100‑1 (MQ=255)
                                                                                 cAATAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGaa                 >  1:3382047/1‑100 (MQ=255)
                                                                                  aaTAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGACGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTTACCTGTGCGCCCGTTTTTCTCTGaaa                <  1:216542/100‑1 (MQ=255)
                                                                                  aaTAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGaaa                <  1:2587493/100‑1 (MQ=255)
                                                                                  aaTAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGaaa                <  1:1727324/100‑1 (MQ=255)
                                                                                   aTAGATCCCCTCTGTCTTTGTGTCGGTCGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGa                  <  2:579216/97‑1 (MQ=255)
                                                                                    tAGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGa              >  1:347495/1‑100 (MQ=255)
                                                                                     aGATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGAt             <  1:2931775/100‑1 (MQ=255)
                                                                                      gATGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATa            >  1:474221/1‑100 (MQ=255)
                                                                                        tGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATAc           <  2:1882062/99‑1 (MQ=255)
                                                                                        tGCCCTCGGCCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACg          >  1:2503528/1‑100 (MQ=255)
                                                                                                gTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGc  <  1:3284955/100‑1 (MQ=255)
                                                                                                 |                                                                                                  
CTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAATAACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACATGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGC  >  NC_000913/2751826‑2752021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A