Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I1 R1
|
165 |
53.8 |
2611523 |
96.4% |
2517508 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,715,439 |
T→C |
L6S (TTA→TCA) |
eamB → |
cysteine and O‑acetylserine exporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,715,439 | 0 | T | C | 100.0%
| 211.6
/ NA
| 60 | L6S (TTA→TCA) | eamB | cysteine and O‑acetylserine exporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (28/32); total (28/32) |
CGAATCTAGAATATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTTAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGATTTCGTCA > NC_000913/2715344‑2715535
|
cGAATCTAGAATATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGt > 2:1118628/1‑100 (MQ=255)
cGAATCTAGAATATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAAATAACAAGTGACACCGACACTTTCAAGt > 2:123479/1‑100 (MQ=255)
gAATCTAGAATATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTg < 1:1177839/100‑1 (MQ=255)
aTCTAGAATATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCt < 2:140058/100‑1 (MQ=255)
tAGAATATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCtttt > 2:1273298/1‑100 (MQ=255)
aaTATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTgg < 2:281698/100‑1 (MQ=255)
aaTATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTgg < 2:464992/100‑1 (MQ=255)
aaTATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTgg < 1:201146/100‑1 (MQ=255)
tataAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGAc < 2:478121/100‑1 (MQ=255)
ataAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACt < 2:1003380/100‑1 (MQ=255)
taAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACtt > 2:679204/1‑100 (MQ=255)
aaaaCATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTac > 1:1265324/1‑100 (MQ=255)
aaaCATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTaca < 1:788568/100‑1 (MQ=255)
aCATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACAcc < 1:572437/100‑1 (MQ=255)
attcattTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCt > 1:1038135/1‑100 (MQ=255)
cattTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGAt > 1:639998/1‑100 (MQ=255)
tttttAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTAcc < 2:542472/100‑1 (MQ=255)
tttttAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTAcc < 2:120479/100‑1 (MQ=255)
ttttAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCg < 2:669460/100‑1 (MQ=255)
tttAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGc > 2:77364/1‑100 (MQ=255)
tAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTa < 2:714492/100‑1 (MQ=255)
tGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGAc > 1:35827/1‑100 (MQ=255)
tGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGAc < 1:1140850/100‑1 (MQ=255)
tGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGAc < 2:825248/100‑1 (MQ=255)
tCCGTGTGGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGcc > 1:686061/1‑100 (MQ=255)
tCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGcc < 1:965642/100‑1 (MQ=255)
tCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGcc > 1:316988/1‑100 (MQ=255)
tCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGcc > 1:1091767/1‑100 (MQ=255)
cGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAg < 2:1183199/100‑1 (MQ=255)
ntgtCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAgg > 1:59116/2‑100 (MQ=255)
tCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGAcc < 1:1265991/100‑1 (MQ=255)
cGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCg < 1:758231/100‑1 (MQ=255)
gggTACTGTCTACCAAAACAGAGGAGATAACAAGTGAGACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGa > 2:697596/1‑100 (MQ=255)
gTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAAc < 1:1011956/100‑1 (MQ=255)
tACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAgatcggaaga > 2:910802/1‑91 (MQ=255)
aCTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTTTTTTTTTTTCCTGATTACCGCTATGACGCCAGGACCGaa > 2:382882/1‑97 (MQ=255)
gTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAatat > 2:982883/1‑100 (MQ=255)
ccAAAACAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCg < 1:901036/100‑1 (MQ=255)
aaaaCAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGcc < 2:1139914/100‑1 (MQ=255)
aaCAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCt < 1:679208/100‑1 (MQ=255)
aCAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCtt < 2:556666/100‑1 (MQ=255)
cAGAGGAGATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTa > 2:319281/1‑100 (MQ=255)
gaggagATAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGc > 1:708945/1‑100 (MQ=255)
agaTAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTg < 1:528448/100‑1 (MQ=255)
agaTAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTg < 1:836212/100‑1 (MQ=255)
gaTAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGc > 1:738100/1‑100 (MQ=255)
tAACAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTa > 2:132131/1‑100 (MQ=255)
aaCAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTAc < 1:1034912/100‑1 (MQ=255)
cAAGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGt > 1:751292/1‑100 (MQ=255)
aGTGACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCg < 1:59358/100‑1 (MQ=255)
gACACCGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCAt > 2:565993/1‑100 (MQ=255)
ccGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGAt > 1:394375/1‑100 (MQ=255)
cGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGAtt > 1:1037957/1‑100 (MQ=255)
cGACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGAtt < 1:1006445/100‑1 (MQ=255)
gACCCTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGAttt > 2:293227/1‑100 (MQ=255)
gACCCTTTCAAGTGCTTTTTGAACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGAttt < 1:123481/100‑1 (MQ=255)
cTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGATTTCGTc > 1:427652/1‑100 (MQ=255)
cTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGATTTCGTc < 1:657851/100‑1 (MQ=255)
cTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGATTTCGTc < 2:253603/100‑1 (MQ=255)
cTTTCAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGATTTCGTc > 2:175306/1‑100 (MQ=255)
tttcAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGATTTCGTCa < 2:886043/100‑1 (MQ=255)
tttcAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGAGTTCGTCa > 1:1304216/1‑100 (MQ=255)
|
CGAATCTAGAATATAAAAACATTCATTTTTTTAAATGTTCCGTGTCGGGTACTGTCTACCAAAACAGAGGAGATAACAAGTGACACCGACCCTTTTAAGTGCTTTTTGGACTTACACCCTGATTACCGCTATGACGCCAGGACCGAACAATATTCTCGCCCTTAGCTCTGCTACGTCGCATGGATTTCGTCA > NC_000913/2715344‑2715535
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
