Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I1 R1
|
165 |
53.8 |
2611523 |
96.4% |
2517508 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,971,955 |
G→A |
R120H (CGC→CAC) |
tas → |
putative NADP(H)‑dependent aldo‑keto reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,971,955 | 0 | G | A | 100.0%
| 121.4
/ NA
| 35 | R120H (CGC→CAC) | tas | putative NADP(H)‑dependent aldo‑keto reductase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (15/20); total (15/20) |
GAGCGGACCGTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCGCCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAACTCGGTTATAGCTGGACGGATT > NC_000913/2971860‑2972047
|
gAGCGGACCGTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTa < 2:1078981/100‑1 (MQ=255)
aGCGGACCGTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTAc < 1:222882/100‑1 (MQ=255)
gCGGACCGTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACa < 1:384730/100‑1 (MQ=255)
gACCGTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGAc < 2:229566/100‑1 (MQ=255)
ccGTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTg > 2:606410/1‑100 (MQ=255)
cGTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGa < 1:72390/100‑1 (MQ=255)
gTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAGTATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGAt > 1:785122/1‑100 (MQ=255)
gcgcAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTAc < 1:405097/100‑1 (MQ=255)
cAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTc > 2:438545/1‑100 (MQ=255)
aataatGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCg < 2:1071037/100‑1 (MQ=255)
tGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCtt < 2:947092/100‑1 (MQ=255)
aCAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTa < 1:1143442/100‑1 (MQ=255)
aCAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTa < 2:408512/100‑1 (MQ=255)
aaGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATc < 1:431543/100‑1 (MQ=255)
gggCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAg > 1:315764/1‑100 (MQ=255)
gggCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAg < 2:444628/100‑1 (MQ=255)
gggCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAg > 1:679065/1‑100 (MQ=255)
aTCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGc < 2:790284/100‑1 (MQ=255)
cGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACt > 1:60281/1‑100 (MQ=255)
gCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTg > 1:520142/1‑100 (MQ=255)
gcTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCg > 1:780621/1‑100 (MQ=255)
tCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAAc < 2:659413/100‑1 (MQ=255)
tCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAAc < 2:524774/100‑1 (MQ=255)
atatCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCgg < 2:315761/100‑1 (MQ=255)
atCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCa < 2:641575/100‑1 (MQ=255)
atCCGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATGACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCa < 1:606414/100‑1 (MQ=255)
ccGCGAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCaaa > 2:956250/1‑100 (MQ=255)
cgcgAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAAc > 2:974952/1‑100 (MQ=255)
cgcgAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAAc > 2:275292/1‑100 (MQ=255)
cgAAGCGCTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCTGACCAACTGCTTCGGCAAACTc < 2:756752/100‑1 (MQ=255)
gcgcTGCATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAACTCGGtt > 1:407263/1‑100 (MQ=255)
cATGACAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAACTCGGTTATAGCt < 1:655087/100‑1 (MQ=255)
cAGCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAACTCGGTTATAGCTGGACg > 2:590364/1‑100 (MQ=255)
gCCTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAACTCGGTTATAGCTGGACGGa > 1:1270277/1‑100 (MQ=255)
cTCAAGCACCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAACTCGGTTATAGCTGGACGGAtt > 1:386876/1‑100 (MQ=255)
|
GAGCGGACCGTCGCGCAATAATGACAAGGGCATCCGCCCGGATCAGGCGCTGGATCGGAAGAATATCCGCGAAGCGCTGCATGACAGCCTCAAGCGCCTACAGACTGATTACCTCGATCTTTATCAGGTGCACTGGCCGCAGCGCCCGACCAACTGCTTCGGCAAACTCGGTTATAGCTGGACGGATT > NC_000913/2971860‑2972047
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
