Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F56 I1 R1
|
165 |
53.8 |
2611523 |
96.4% |
2517508 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,479,551 |
A→G |
intergenic (‑14/‑179) |
yjgM ← / → yjgN |
GNAT family putative N‑acetyltransferase/DUF898 family inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,479,551 | 0 | A | G | 87.9%
| 159.4
/ 7.0
| 58 | intergenic (‑14/‑179) | yjgM/yjgN | GNAT family putative N‑acetyltransferase/DUF898 family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (3/4); new base G (26/25); total (29/29) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CCTGACGAATGACGCGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGA > NC_000913/4479453‑4479646
|
ccTGACGAATGACGCGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCaataa > 1:571679/1‑100 (MQ=255)
cTGACGAATGACGCGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCaatgaa < 2:819547/100‑1 (MQ=255)
tGACGAATGACGCGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCaatgaaa > 2:1292047/1‑100 (MQ=255)
gAATGACGCGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCaatgaaaataa < 2:367904/100‑1 (MQ=255)
aTGACGCGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAg > 1:1136409/1‑100 (MQ=255)
aTGACGCGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAg < 1:197092/100‑1 (MQ=255)
cgcgGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAAt > 2:205037/1‑100 (MQ=255)
gggCGATAGCAGGATTATCGTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATta < 2:348022/99‑1 (MQ=255)
ggCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCAGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATtata < 2:608382/100‑1 (MQ=255)
aTAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACAtt < 1:544444/100‑1 (MQ=255)
naGCAGGATTATCCTGCAGCATCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACAttt > 2:795704/2‑100 (MQ=255)
gCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGt > 1:1055316/1‑100 (MQ=255)
cAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGtt > 1:273145/1‑100 (MQ=255)
cAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGtt > 2:1199977/1‑100 (MQ=255)
cAGGAGTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGtt < 1:759569/100‑1 (MQ=255)
aGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGttt < 1:1160159/100‑1 (MQ=255)
aGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGttt < 1:1076731/100‑1 (MQ=255)
aTCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATAcc < 2:460649/100‑1 (MQ=255)
ccTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCAc < 1:346845/100‑1 (MQ=255)
ccTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCAc > 1:175479/1‑100 (MQ=255)
tGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCActc < 1:662021/100‑1 (MQ=255)
cAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCActctc > 1:812309/1‑100 (MQ=255)
aGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCActctct > 1:930391/1‑100 (MQ=255)
aGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCActctct < 1:739892/100‑1 (MQ=255)
gCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCtctt > 1:13174/1‑100 (MQ=255)
cGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCtcttc < 1:745195/100‑1 (MQ=255)
gTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCtcttct > 1:647042/1‑100 (MQ=255)
gTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCtcttct > 1:189712/1‑100 (MQ=255)
tCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTcttctt < 2:473710/100‑1 (MQ=255)
cAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTta < 2:998130/100‑1 (MQ=255)
cAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTta > 2:496929/1‑100 (MQ=255)
aGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTtac > 1:178522/1‑100 (MQ=255)
cGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTtacgta > 1:464293/1‑100 (MQ=255)
cATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCaa > 1:383645/1‑100 (MQ=255)
ttACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGc > 1:640954/1‑100 (MQ=255)
tACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGcn < 1:795709/100‑2 (MQ=255)
cAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGAc > 2:828601/1‑100 (MQ=255)
gTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTta < 1:176298/100‑1 (MQ=255)
tGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTtat > 2:1208512/1‑100 (MQ=255)
gcggcgCAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGt < 1:630525/100‑1 (MQ=255)
cggcgCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGta > 2:813995/1‑100 (MQ=255)
gcAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACTCAAGCGACTTATAAAGtaataa < 2:759086/100‑1 (MQ=255)
gcAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGtaataa > 1:629904/1‑100 (MQ=255)
gcAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGtaataa < 1:96733/100‑1 (MQ=255)
gcAATGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGtaataa > 1:101485/1‑100 (MQ=255)
aaTGTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTAGACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAg > 2:714560/1‑100 (MQ=255)
aaTGTTATTCATAGTTTAACCAAATAAAAATAAAGTAATTATACATTTCTTTAATACCACTCTCCTCTTACGTACGCAAGCGACTTATAAAGt < 2:188787/93‑1 (MQ=255)
gTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGttt < 2:869381/100‑1 (MQ=255)
gTTATTCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGttt < 2:1158027/100‑1 (MQ=255)
tCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGcc < 2:129701/100‑1 (MQ=255)
tCATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGcc < 2:998291/100‑1 (MQ=255)
cATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCa > 1:819521/1‑100 (MQ=255)
cATAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCa > 1:618268/1‑100 (MQ=255)
aTAGTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAg > 2:783766/1‑100 (MQ=255)
aTAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCGTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGcc < 2:519141/98‑1 (MQ=255)
gTTTAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCt > 1:799450/1‑100 (MQ=255)
tAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTAtt < 2:1090287/100‑1 (MQ=255)
tAACCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTAtt < 1:783771/100‑1 (MQ=255)
aCCCAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTAc > 2:532269/1‑100 (MQ=255)
cccAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACt < 2:501212/100‑1 (MQ=255)
ccAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGGGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACt < 2:802419/99‑1 (MQ=255)
cAATGAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGa > 2:1126367/1‑100 (MQ=255)
|
CCTGACGAATGACGCGGGCGATAGCAGGATTATCCTGCAGCGTCAGGCGACGCATTACAGGTGATTGCGGCGCAATGTTATTCATAGTTTAACCCAATAAAAATAAAGTAATTATACATTTGTTTAATACCACTCTCTTCTTACGTACGCAAGCGACTTATAAAGTAATAAAGTTTTTGCCAGCCTATTACTGA > NC_000913/4479453‑4479646
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
