Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F50 I2 R1 11 44.6 1622634 97.7% 1585313 150.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,187,816 Δ15 bp coding (2467‑2481/4224 nt) rpoC → RNA polymerase, beta prime subunit

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4187816 4187830 15 38 [0] [0] 39 rpoC RNA polymerase, beta prime subunit

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 41878150 (0.000)38 (0.750) 37/296 0.6 100% coding (2466/4224 nt) rpoC RNA polymerase, beta prime subunit
?NC_000913 4187831 = 0 (0.000)coding (2482/4224 nt) rpoC RNA polymerase, beta prime subunit

GATK/CNVnator alignment

N/A