Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F50 I2 R1	14	50.4	1586623	98.1%	1556477	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,182,583	C→T	H447Y (CAC→TAC)	rpoB →	RNA polymerase, beta subunit

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,182,583	0	C	T	100.0%	199.8 / NA	55	H447Y (CAC→TAC)	rpoB	RNA polymerase, beta subunit
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (25/30); total (25/30)

GTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCCACAGGATATGATCA  >  NC_000913/4182435‑4182724

gTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGactac                                                                                                                                             >  1:118225/1‑151 (MQ=255)

 tCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGactacc                                                                                                                                            >  1:249863/1‑151 (MQ=255)

    gCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCg                                                                                                                                         <  1:661677/151‑1 (MQ=255)

    gCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCg                                                                                                                                         <  1:641912/151‑1 (MQ=255)

        ttGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCa                                                                                                                                      >  1:246988/1‑150 (MQ=255)

          ggTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAAc                                                                                                                                    <  1:425247/150‑1 (MQ=255)

             cGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACcgtc                                                                                                                                >  2:145780/1‑151 (MQ=255)

                aTGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACcgtcgt                                                                                                                              <  1:31198/150‑1 (MQ=255)

                aTGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTa                                                                                                                             <  1:205087/151‑1 (MQ=255)

                 tGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTAt                                                                                                                            >  1:88182/1‑151 (MQ=255)

                   aaGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCATCCGTCGTAt                                                                                                                            <  2:355190/149‑1 (MQ=255)

                        cAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTAtccgttc                                                                                                                      <  2:524744/150‑1 (MQ=255)

                        cAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACAGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTAtccggtcc                                                                                                                     <  2:598773/151‑1 (MQ=255)

                         aaCCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTAtccgttccg                                                                                                                    >  2:86214/1‑151 (MQ=255)

                          aCCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTAtccgttccgt                                                                                                                   <  1:242775/151‑1 (MQ=255)

                          aCCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTAtccgttccgt                                                                                                                   >  1:315022/1‑151 (MQ=255)

                               tctcTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGc                                                                                                               <  2:118190/150‑1 (MQ=255)

                                    gctgcGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATg                                                                                                         <  2:446904/151‑1 (MQ=255)

                                     ctgcGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATgg                                                                                                        >  2:643348/1‑151 (MQ=255)

                                       gcgcGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGc                                                                                                       <  1:486560/150‑1 (MQ=255)

                                         gcgAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCgg                                                                                                     >  2:317225/1‑150 (MQ=255)

                                          cgAAGAAATCGAAGGTGCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGaa                                                                                                   <  2:387420/151‑1 (MQ=255)

                                           gaagaaATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGaa                                                                                                   >  1:543320/1‑150 (MQ=255)

                                               aaaTCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCa                                                                                              <  1:643420/151‑1 (MQ=255)

                                               aaaTCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCa                                                                                              <  2:331076/151‑1 (MQ=255)

                                                     aaGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCcg                                                                                        <  2:200562/151‑1 (MQ=255)

                                                          tCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTg                                                                                   >  2:420423/1‑151 (MQ=255)

                                                           ccGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGTGAAATGGCGGAAAACCAGTTCCGCGTTgg                                                                                  >  1:299791/1‑151 (MQ=255)

                                                              gTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCt                                                                               >  1:598968/1‑151 (MQ=255)

                                                               tATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTg                                                                              >  1:587982/1‑151 (MQ=255)

                                                                acccTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGGCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTg                                                                              <  2:105226/148‑1 (MQ=255)

                                                                  ccTGAGCAAAGACGACATCATTGATGTTATGAAACAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGACATGGCGGAAAACCAGTTCCGCGTTGGCCTgg                                                                             >  2:411665/1‑149 (MQ=255)

                                                                           aGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTag                                                                    >  1:592685/1‑149 (MQ=255)

                                                                               gacATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTg                                                              >  1:645579/1‑151 (MQ=255)

                                                                                  atcatTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCgg                                                           <  1:137506/151‑1 (MQ=255)

                                                                                         aTGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGa                                                        >  1:453542/1‑147 (MQ=255)

                                                                                          tGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAag                                                     >  1:412141/1‑149 (MQ=255)

                                                                                              aTGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCgtc                                               >  2:310479/1‑151 (MQ=255)

                                                                                                gAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCgtcgg                                             <  2:11668/151‑3 (MQ=255)

                                                                                                  aaacGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGCCATCCGGCGTATCCCTTCCGTTGGCGAAACGGCGGAAAACCAGTGCCGCGTTGGCCTGGTACTTGTAGAGCGTTCGGTGGAAGAGCgtctg                                             <  2:415364/149‑1 (MQ=255)

                                                                                                       cTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTgg                                      >  2:516167/1‑151 (MQ=255)

                                                                                                          aTCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCg                                   <  1:658400/151‑1 (MQ=255)

                                                                                                          aTCGATATCCGTAACGGCAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCg                                   >  2:329718/1‑151 (MQ=255)

                                                                                                            cGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGa                                  <  2:389284/150‑1 (MQ=255)

                                                                                                              atatCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCt                               <  1:758769/151‑1 (MQ=255)

                                                                                                                atCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTg                              <  1:231408/150‑1 (MQ=255)

                                                                                                                atCCGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTg                              <  2:286672/150‑1 (MQ=255)

                                                                                                                   cGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGAt                           >  1:584412/1‑150 (MQ=255)

                                                                                                                   cGTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATa                          <  1:363413/151‑1 (MQ=255)

                                                                                                                    gTAACGGTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATAc                         >  1:112955/1‑151 (MQ=255)

                                                                                                                          gTAAAGGCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCACGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGAt                   >  2:122183/1‑151 (MQ=255)

                                                                                                                                gCGAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCcaca             <  2:283171/151‑1 (MQ=255)

                                                                                                                                  gAAGTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCCACAgg           <  2:88148/151‑1 (MQ=255)

                                                                                                                                     gTCGATGATATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCCACAGGat         >  1:387102/1‑150 (MQ=255)

                                                                                                                                        gatgatATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCCACAGGATATGa     <  2:283264/151‑1 (MQ=255)

                                                                                                                                         atgatATCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCCACAGGATATGag    <  1:411722/151‑2 (MQ=255)

                                                                                                                                            atatCGACTACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCCACAGGATATGATCa  >  1:496794/1‑150 (MQ=255)

GTCTGCGGTTGGTCGTATGAAGTTCAACCGTTCTCTGCTGCGCGAAGAAATCGAAGGTTCCGGTATCCTGAGCAAAGACGACATCATTGATGTTATGAAAAAGCTCATCGATATCCGTAACGGTAAAGGCGAAGTCGATGATATCGACCACCTCGGCAACCGTCGTATCCGTTCCGTTGGCGAAATGGCGGAAAACCAGTTCCGCGTTGGCCTGGTACGTGTAGAGCGTGCGGTGAAAGAGCGTCTGTCTCTGGGCGATCTGGATACCCTGATGCCACAGGATATGATCA  >  NC_000913/4182435‑4182724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A