Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F50 I2 R1 173 150.8 4954114 96.5% 4780720 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 741,429 A→G S376S (TCT→TCC)  dtpD ← dipeptide and tripeptide permease D

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913741,4290AG100.0% 560.3 / NA 147S376S (TCT→TCC) dtpDdipeptide and tripeptide permease D
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (73/74);  total (73/74)

Only 100 of 151 total aligned reads displayed.

CGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGG  >  NC_000913/741281‑741576
                                                                                                                                                    |                                                                                                                                                   
 gATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAggga                                                                                                                                                   >  3:304227/1‑150 (MQ=255)
    cgcgCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGggaaga                                                                                                                                                <  4:1418805/150‑1 (MQ=255)
    cgcgCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGggaag                                                                                                                                                 >  4:405359/1‑149 (MQ=255)
     gcgcCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGt                                                                                                                                              <  4:1353717/151‑1 (MQ=255)
     gcgcCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGt                                                                                                                                              >  4:1605928/1‑151 (MQ=255)
      cgcCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTg                                                                                                                                             <  4:1335125/151‑1 (MQ=255)
            aaaGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCa                                                                                                                                         >  1:417257/1‑149 (MQ=255)
            aaaGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATa                                                                                                                                       <  2:422510/151‑1 (MQ=255)
                cagcaTGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACAtt                                                                                                                                   <  4:228505/151‑1 (MQ=255)
                     tGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCgg                                                                                                                               >  4:1872895/1‑150 (MQ=255)
                       tAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGAcc                                                                                                                            >  4:77128/1‑151 (MQ=255)
                       tAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGAcc                                                                                                                            >  4:1885619/1‑151 (MQ=255)
                        aGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCa                                                                                                                           <  4:319406/151‑1 (MQ=255)
                            gCCGGTTAATACGCCGGTCACCCCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCgg                                                                                                                       <  1:1426630/151‑1 (MQ=255)
                            gCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCg                                                                                                                        <  4:1333789/150‑1 (MQ=255)
                             ccGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCggg                                                                                                                      >  1:1635416/1‑151 (MQ=255)
                               ggTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGgcg                                                                                                                    <  1:788779/151‑1 (MQ=255)
                               ggTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGgc                                                                                                                     >  3:253206/1‑150 (MQ=255)
                                   aaTACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCtt                                                                                                                 >  1:888026/1‑150 (MQ=255)
                                    aTACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTaa                                                                                                               <  4:1182399/151‑1 (MQ=255)
                                    aTACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTa                                                                                                                >  1:866156/1‑150 (MQ=255)
                                    aTACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTGCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTaa                                                                                                               <  4:511796/151‑1 (MQ=255)
                                      aCGCCGGTCACCCCGGGGATTTCAATGCGCGTAATTTGCGACATGGCACCCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAg                                                                                                              <  1:1175204/150‑1 (MQ=255)
                                       cGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAgg                                                                                                             <  3:39707/150‑1 (MQ=255)
                                       cGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGt                                                                                                            <  1:523682/151‑1 (MQ=255)
                                          cGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTc                                                                                                           >  4:552482/1‑149 (MQ=255)
                                           ggTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGAAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCa                                                                                                          <  2:422263/149‑1 (MQ=255)
                                                cacCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGc                                                                                                    >  2:111525/1‑150 (MQ=255)
                                                 acCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGc                                                                                                    >  1:1769686/1‑149 (MQ=255)
                                                 acCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGc                                                                                                    >  3:378208/1‑149 (MQ=255)
                                                 acCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGc                                                                                                    >  1:153957/1‑149 (MQ=255)
                                                  ccGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGa                                                                                                 <  4:12871/151‑1 (MQ=255)
                                                    ggggATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCGGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAAt                                                                                               <  4:837643/151‑1 (MQ=255)
                                                     gggATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATc                                                                                              <  1:1428435/151‑1 (MQ=255)
                                                     gggATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATc                                                                                              <  1:1169664/151‑1 (MQ=255)
                                                      ggATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATcc                                                                                             <  1:1556831/151‑1 (MQ=255)
                                                       gATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCg                                                                                            <  2:279647/151‑1 (MQ=255)
                                                       gATTGCAATGCGCGTAATTTGCGACATGGCAACGGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCg                                                                                            <  1:330422/151‑1 (MQ=255)
                                                        aTTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCgg                                                                                           >  1:1598562/1‑151 (MQ=255)
                                                        aTTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCgg                                                                                           <  4:673570/151‑1 (MQ=255)
                                                             aaTGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCtc                                                                                      >  4:1039868/1‑151 (MQ=255)
                                                                gcgcGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCtcatc                                                                                   <  4:620462/151‑1 (MQ=255)
                                                                  gcgTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCag                                                                                 <  2:43055/151‑1 (MQ=255)
                                                                   cgTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCagg                                                                                <  1:1724339/151‑1 (MQ=255)
                                                                    gTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCaggc                                                                               >  1:1678031/1‑151 (MQ=255)
                                                                       aTTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCaggccaa                                                                            <  4:1720928/151‑1 (MQ=255)
                                                                               cATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAaga                                                                    <  4:327810/151‑1 (MQ=255)
                                                                                aTGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAaga                                                                    <  3:76830/150‑1 (MQ=255)
                                                                                 tGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGc                                                                  >  1:1798753/1‑151 (MQ=255)
                                                                                  ggCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAagag                                                                   <  1:405218/149‑1 (MQ=255)
                                                                                  ggCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGc                                                                  <  1:1335057/150‑1 (MQ=255)
                                                                                  ggCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCa                                                                 <  4:798106/151‑1 (MQ=255)
                                                                                   gCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCa                                                                 >  4:1217983/1‑150 (MQ=255)
                                                                                     aaCCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAAt                                                              >  1:1235750/1‑151 (MQ=255)
                                                                                       ccGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAAttt                                                            >  1:990195/1‑151 (MQ=255)
                                                                                       ccGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAAttt                                                            >  2:15045/1‑151 (MQ=255)
                                                                                        cGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTc                                                           >  1:833270/1‑151 (MQ=255)
                                                                                        cGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTc                                                           <  3:184205/151‑1 (MQ=255)
                                                                                           gTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTcccc                                                        >  4:1761169/1‑151 (MQ=255)
                                                                                               aTAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGa                                                    <  3:160556/151‑1 (MQ=255)
                                                                                                tAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTccccc                                                       >  3:88185/1‑147 (MQ=255)
                                                                                                tAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTccccc                                                       >  1:1082072/1‑147 (MQ=255)
                                                                                                tAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTccccc                                                       >  2:166934/1‑147 (MQ=255)
                                                                                                tAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTccccc                                                       >  2:89256/1‑147 (MQ=255)
                                                                                                 aaaCAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATg                                                  <  3:58451/151‑1 (MQ=255)
                                                                                                  aaCAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATgc                                                 >  3:1975/1‑151 (MQ=255)
                                                                                                     aGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATgcgc                                               >  1:747268/1‑150 (MQ=255)
                                                                                                     aGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCa                                              <  1:552258/151‑1 (MQ=255)
                                                                                                      gTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCAc                                             <  4:1008363/151‑1 (MQ=255)
                                                                                                      gTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCAc                                             >  1:1911442/1‑151 (MQ=255)
                                                                                                      gTTCCGCAAAGCCCACCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCAc                                             <  3:90635/151‑1 (MQ=255)
                                                                                                       ttCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCAc                                             <  4:1508321/150‑1 (MQ=255)
                                                                                                        tCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACg                                            <  1:734937/150‑1 (MQ=255)
                                                                                                        tCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACg                                            <  2:88185/150‑1 (MQ=255)
                                                                                                         ccGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACgg                                           <  1:900574/150‑1 (MQ=255)
                                                                                                         ccGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACgg                                           <  1:346586/150‑1 (MQ=255)
                                                                                                         ccGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGt                                          <  2:244483/151‑1 (MQ=255)
                                                                                                             aaaGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACg                                       >  1:444406/1‑150 (MQ=255)
                                                                                                              aaGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGAt                                     >  1:689975/1‑151 (MQ=255)
                                                                                                                    aTCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCcg                               >  4:228792/1‑151 (MQ=255)
                                                                                                                    aTCACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCcg                               <  1:1641118/151‑1 (MQ=255)
                                                                                                                      cACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCcgc                              <  4:1515672/150‑1 (MQ=255)
                                                                                                                      cACCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCcgc                              <  3:466903/150‑1 (MQ=255)
                                                                                                                       aCCGCCAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCcgcg                             >  4:573366/1‑150 (MQ=255)
                                                                                                                           ccAGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACAct                        <  4:1565182/151‑1 (MQ=255)
                                                                                                                             aGGCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACActc                       >  1:1338046/1‑150 (MQ=255)
                                                                                                                              ggCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACActctc                     >  3:174836/1‑151 (MQ=255)
                                                                                                                               gCCTAATACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACActctct                    >  1:1289729/1‑151 (MQ=255)
                                                                                                                                   aaTACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCtttt                 <  4:1251021/150‑1 (MQ=255)
                                                                                                                                     tACCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTacc              >  1:1075392/1‑151 (MQ=255)
                                                                                                                                      aCCATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTacc              >  1:8504/1‑150 (MQ=255)
                                                                                                                                       ccATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTaccac            >  1:1365499/1‑151 (MQ=255)
                                                                                                                                       ccATCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTaccac            <  1:684754/151‑1 (MQ=255)
                                                                                                                                         aTCAGTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTAccaccc          <  3:462033/151‑1 (MQ=255)
                                                                                                                                           cAGTGGCAGGGAAGAGTGACCATACATTGCGGACCCGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATAACGCCAAGGCCCAGAGAAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTAccaccca         >  3:406234/1‑150 (MQ=255)
                                                                                                                                             gTGGCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCGCCCACGc      <  1:382678/151‑1 (MQ=255)
                                                                                                                                               ggCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCa    <  1:1906125/151‑1 (MQ=255)
                                                                                                                                               ggCAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCa    <  3:261233/151‑1 (MQ=255)
                                                                                                                                                gCAGGGAAGAGTGACCATACAATGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCAGGGTACGATTTCCCGCGACACTCTCTTTTACCACCAACGCCAg   <  1:1398102/151‑1 (MQ=255)
                                                                                                                                                 cAGGGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAgg  >  1:1578399/1‑151 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CGATCGCGCCAGAAAGCAGCATGTAGATGCCGGTTAATACGCCGGTCACACCGGGGATTTCAATGCGCGTAATTTGCGACATGGCAACCGGGTCGATAAACAGTTCCGCAAAGCCCATCACCGCCAGGCCTAATACCATCAGTGGCAGAGAAGAGTGACCATACATTGCGGACCAGCGGGCGCTTAAGGTCAGAATGCAGAATCCGGCGCTCATCAGGCCAAGGCCAAGAGCAAATTTCCCCCAGATGCGCACGGTACGATTACCCGCGACACTCTCTTTTACCACCCACGCCAGG  >  NC_000913/741281‑741576

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A