Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F50 I2 R1 173 150.8 4954114 96.5% 4780720 150.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,205,497 T→C pseudogene (1094/1134 nt) aaaE → pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,205,4970TC98.3% 389.5 / NA 116pseudogene (1094/1134 nt)aaaEpseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (42/72);  minor base A (2/0);  total (44/72)
Fisher's exact test for biased strand distribution p-value = 1.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01

Only 100 of 116 total aligned reads displayed.

ATCGGCAACGTGGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCTGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCCGGCGGGTTTTGTT  >  NC_000913/1205352‑1205644
                                                                                                                                                  |                                                                                                                                                    
aTCGGCAACGTGGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTg                                                                                                                                                 <  3:529399/151‑1 (MQ=255)
   ggCAACGTGGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATc                                                                                                                                              <  1:1323677/151‑1 (MQ=255)
      aaCGTGGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATcaca                                                                                                                                           <  2:93509/151‑1 (MQ=255)
         gTGGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTg                                                                                                                                        <  4:782631/151‑1 (MQ=255)
          tGGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGGCCAGCTGTAC‑GAGAAAAAAGACACGCCGCCCGATcacact                                                                                                                                         >  4:336441/1‑147 (MQ=255)
           ggTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGa                                                                                                                                       <  1:1137130/150‑1 (MQ=255)
           ggTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGa                                                                                                                                       <  4:1660073/150‑1 (MQ=255)
                gCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTa                                                                                                                                 <  1:522309/151‑1 (MQ=255)
                 cAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTAc                                                                                                                                <  3:297076/151‑1 (MQ=255)
                  aaaaCCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACg                                                                                                                               <  4:402451/151‑1 (MQ=255)
                  aaaaCCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACg                                                                                                                               <  4:1438381/151‑1 (MQ=255)
                  aaaaCCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACg                                                                                                                               <  1:1533617/151‑1 (MQ=255)
                  aaaaCCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGGTGGGGGAGGCACGCTGTTC‑GAGGAAAAAAACAAGCCCCCTGATtacaatttgtcc                                                                                                                                   >  1:501877/1‑139 (MQ=255)
                   aaaCCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGTGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACgg                                                                                                                              <  4:207232/151‑1 (MQ=255)
                   aaaCCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGGCACGCGGTGC‑GAGAAAGAAGAAACACCGCCTGTTCACAATTAGTCCTACg                                                                                                                               >  2:507259/1‑150 (MQ=255)
                   aaaCCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACgg                                                                                                                              <  2:104083/151‑1 (MQ=255)
                    aaCCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACggg                                                                                                                             <  4:536689/151‑1 (MQ=255)
                      ccATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCTGAGCCCAGCTGTGC‑AGGAAAAAAGAAACGCCGCCTGTTCACATTTGGTCCttcagg                                                                                                                             >  4:1048572/1‑144 (MQ=255)
                      ccATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGAt                                                                                                                           <  1:292987/151‑1 (MQ=255)
                       cATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTTGGAGAGGCATGCTGTAC‑GAGAAAAAAAAAACGCCGCCTGATCACATTTAGTTCTACggg                                                                                                                             >  4:1208416/1‑148 (MQ=255)
                       cATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTTGCGGGAGCAAGCTGTTC‑GAGAAAGAAGAAAAGCCGGCTGATTACATTTAGTCCCTCggg                                                                                                                             >  4:1371217/1‑148 (MQ=255)
                        aTTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGGCAAGCTGTTC‑GAGAAAAAAAAAACACCCCCTGATCACATTTAGTCCTTCCGGGTcc                                                                                                                         >  4:1261955/1‑151 (MQ=255)
                          tCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCcg                                                                                                                        <  4:576888/150‑1 (MQ=255)
                            cGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCcgctc                                                                                                                     <  3:65831/151‑1 (MQ=255)
                            cGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCcgctc                                                                                                                     <  1:1392571/151‑1 (MQ=255)
                                 aaCGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑Cttt                                                                                                               <  1:698338/151‑1 (MQ=255)
                                 aaCGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCAGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑Ctt                                                                                                                <  3:249461/150‑1 (MQ=255)
                                     atgatgTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGTAGGGCCAAGGTGGGA‑GAGGAAAAAGAAAAGAAGACCGGTCACATTAAGGTCTACGGGGTCCGCGCGCCTTTaat                                                                                                            >  1:1507858/1‑150 (MQ=255)
                                     atgatgTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGGCCTCCCGTTC‑GAGAAAAAAGACACGCCGCCTGATCTACTTGAGGGCTACCGGGTCCGCCCG‑Cttt                                                                                                               >  1:234761/1‑147 (MQ=255)
                                          gtggtgAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAgg                                                                                                       <  4:1535304/150‑1 (MQ=255)
                                          gtggtgAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGt                                                                                                      <  1:1718973/151‑1 (MQ=255)
                                            ggtgAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTaa                                                                                                    <  2:200233/151‑1 (MQ=255)
                                               gAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTacgttatgtcaata                                                                                                 <  1:1596642/151‑14 (MQ=255)
                                               gAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAAtt                                                                                                  <  3:338932/150‑1 (MQ=255)
                                               gAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAAtt                                                                                                  <  3:486622/150‑1 (MQ=255)
                                               gAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTa                                                                                                 <  2:476272/151‑1 (MQ=255)
                                               gAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCAAGCTGGAC‑GAGAAAAAAGAAACGCCGCCTGATCACATTGAGTCCTACGGGGGCCGCCCG‑CCTTTACTGAgg                                                                                                       >  2:149315/1‑145 (MQ=255)
                                                 aGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATg                                                                                               <  2:151704/151‑1 (MQ=255)
                                                   cccGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGAt                                                                                             <  1:1758220/151‑1 (MQ=255)
                                                     cGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCa                                                                                           <  4:1054322/151‑1 (MQ=255)
                                                     cGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGACATCCGGTAC‑GAGGAAAAAGAAACGCCGCCTGAACACAATTAGTGCTTCCGGGGCCGCCGG‑CCTTTACTTAGGGAATTATg                                                                                               >  4:889771/1‑147 (MQ=255)
                                                         aaGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCt                                                                                       <  1:965577/151‑1 (MQ=255)
                                                         aaGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCt                                                                                       <  1:1357487/151‑1 (MQ=255)
                                                           ggAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTg                                                                                      <  1:44885/150‑1 (MQ=255)
                                                            gAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGGCCTGCTGTTC‑GCGAAAAAAAACACGCCCGCTGTTCACATTTAGTCCTACCGGGAGCGCCCA‑CGTTTAATGAGGGAAATATTATCAttgctct                                                                                    >  2:197997/1‑145 (MQ=255)
                                                             aGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGCCATGCTGTAA‑GAGAAAAAAAAAACACCCGCTGATCAAATTTAGTTCTACGGGGTCCGCCCC‑CCTTAAATTTGGGAATTATGATAATTCTGAtt                                                                                   >  4:481525/1‑151 (MQ=255)
                                                               cAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGGCATGCTGTAC‑GAGAAAAAAAAAACGCCCGCTGATCACAATTAGTTCTACGGGGTCCGCCCG‑CCTTTACTTAGGGAAATATGATCATGCTGAtttt                                                                                 >  4:1190637/1‑149 (MQ=255)
                                                                  gCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGGCCTGCTGGTC‑GAGGAAAAAGAAACGCCGTCTGAGCACATTAGGTCCCACGGGGTCCGCCCG‑CCTTAACTGAGGTAAATATTATctttgtgagt                                                                                   >  4:1552081/1‑137 (MQ=255)
                                                                  gCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTcgc                                                                              <  4:1746825/151‑1 (MQ=255)
                                                                    ggAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGCCCTTCTGTAC‑GAGAAAAAAAAAACCCCCTCTGCTTACATTTTGGTCTTCCGGGGCCCCCCG‑CCTTTTCTGAGGGGATTATGATCATACTGGtt                                                                                   >  4:1473116/1‑144 (MQ=255)
                                                                     gAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGCGGGCCATGCCGTAG‑GAGGAAAAAGAAACACCGCCTGATTACATTTAGTCCCTCGGGGTCCGCCCG‑CCTTAACTGAGGGGATTATTATTTTGTTGATTTTTGCGcc                                                                           >  4:1900423/1‑151 (MQ=255)
                                                                      aaaaCAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGGCATGCTGGAA‑GGGGAAAAAGAAAACCCCGCTGGTCACATTTAGTCCTACGGGGGCCGCCCG‑CCTTTACTTAGGGGAATATTATTATGATGATTTTCGCGcc                                                                           >  1:1645289/1‑150 (MQ=255)
                                                                      aaaaCAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGAGAGACATGCCGGAA‑GAGAAAGAAGACAAGCCGGCCGTTCACATTTAGTCTTACGGGGAGCGCCCG‑CCTTTACTCAGGGGAATATTAAGATGCTGTTTTTCCCGcc                                                                           >  1:770003/1‑150 (MQ=255)
                                                                       aaaCAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCctc                                                                         <  1:104924/151‑1 (MQ=255)
                                                                         aCAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGCGAGGCACGCTGTTC‑GCGAAAGAAGAAACACCGCCCGATCACATTTAGTCCTACGGGGTCCGCCCG‑CTTTTACTGAGGGAATTATGATCATGTTGATtctccc                                                                              >  1:514189/1‑142 (MQ=255)
                                                                         aCAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCtg                                                                       <  1:1263994/151‑1 (MQ=255)
                                                                           aaaaTCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCCGAGCCATGCCGTAC‑CAGAAAGAAGAAAAGCCGTCTGATCACATTTAGTCCTACCGGGCCCGCTCG‑CCTTTTATGAGGTAATTATTATCATGCTGATTTTTGCGcccc                                                                         >  4:1270180/1‑145 (MQ=255)
                                                                           aaaaTCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCtggt                                                                     <  1:1858094/151‑1 (MQ=255)
                                                                            aaaTCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGGGGGGCCCAGGTGGTC‑GAGGAAAAAAAAAAACCGCCTGGTCACACTGAGTTCTCCGGGGGCCCCTCG‑CGTTTACTTAGGGAAATATGATCATTGTGATTTTTgcgc                                                                            >  1:749241/1‑143 (MQ=255)
                                                                            aaaTCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCtggtg                                                                    <  3:507870/151‑1 (MQ=255)
                                                                              aTCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTggg                                                                  <  1:1684982/151‑1 (MQ=255)
                                                                                cGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGc                                                                 <  4:921053/150‑1 (MQ=255)
                                                                                        cAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGt                                                        <  1:6731/151‑1 (MQ=255)
                                                                                          gTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTgc                                                      <  4:578714/151‑1 (MQ=255)
                                                                                            tGCGCTGATTATGGCGGTTGGCGGGGCCATGCCGTTC‑GAGAAAAAAGAAACCCCCGCCGGTCCCATTGAGTTCTACGGGGGCCGCCCG‑CCTTTAATTAGGGAAATATTATTATTCTGGTTTTCCCGCCCCTGGTGGgggggcggggggcg                                                     >  1:1354262/1‑150 (MQ=255)
                                                                                              cgcTGATTATGGCGGTTGGCAATGACAACCTCTACAGTGAAA‑AAGACACCACGCCTGAACACATTAAGTTCTACAGGATACGCCCC‑CTTTTAATTAGGGGATTAATAACATGCTGATTCTCGCGCCCCTCGTGGGGGGGCTggggg                                                       >  1:662628/1‑144 (MQ=255)
                                                                                               gcTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCttt                                                 <  1:218106/151‑1 (MQ=255)
                                                                                                  gATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCtttt                                                <  1:848032/149‑1 (MQ=255)
                                                                                                  gATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCtttt                                                <  3:272522/149‑1 (MQ=255)
                                                                                                  gATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGc                                              <  3:540243/151‑1 (MQ=255)
                                                                                                      aTGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTgg                                           <  4:742570/150‑1 (MQ=255)
                                                                                                      aTGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGc                                          <  4:1114436/151‑1 (MQ=255)
                                                                                                        ggCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGt                                        >  1:475588/1‑151 (MQ=255)
                                                                                                          cGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTAt                                      <  4:21148/151‑1 (MQ=255)
                                                                                                           ggTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATg                                     <  1:1231546/151‑1 (MQ=255)
                                                                                                           ggTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATg                                     >  2:496092/1‑151 (MQ=255)
                                                                                                           ggTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATg                                     <  4:325014/151‑1 (MQ=255)
                                                                                                             ttGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGt                                   >  1:249610/1‑151 (MQ=255)
                                                                                                               ggCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGc                                 <  3:26356/151‑1 (MQ=255)
                                                                                                                gCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGcc                                >  4:467989/1‑151 (MQ=255)
                                                                                                                  agagCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTg                              <  4:1919384/151‑1 (MQ=255)
                                                                                                                   gagCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTgg                             <  3:540740/151‑1 (MQ=255)
                                                                                                                    agCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGc                            <  3:257499/151‑1 (MQ=255)
                                                                                                                    agCCATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGc                            >  4:790162/1‑151 (MQ=255)
                                                                                                                      ccATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTg                          >  3:103722/1‑151 (MQ=255)
                                                                                                                      ccATGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTg                          >  1:1216820/1‑151 (MQ=255)
                                                                                                                        aTGCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGAt                        <  3:322306/151‑1 (MQ=255)
                                                                                                                          gCTGTAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGAttt                      >  3:97239/1‑151 (MQ=255)
                                                                                                                              tAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATcc                  >  4:1772138/1‑151 (MQ=255)
                                                                                                                              tAC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATcc                  >  4:1174809/1‑151 (MQ=255)
                                                                                                                               aC‑GAGAAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATcc                  <  4:1489075/150‑1 (MQ=255)
                                                                                                                                  gagaAAGAAGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATccccc               <  2:500651/151‑1 (MQ=255)
                                                                                                                                     aaagaaGACACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCcggc            >  4:1231619/1‑151 (MQ=255)
                                                                                                                                     aaagaaGACACGCCGTCTGAACACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTTCCTGGCTGATTTATCCCCcggc            <  1:1373972/151‑1 (MQ=255)
                                                                                                                                       agaagaCACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCcggcgg          <  4:794525/151‑1 (MQ=255)
                                                                                                                                         aagaCACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCCGGCGGGt        >  3:176676/1‑151 (MQ=255)
                                                                                                                                          agaCACGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCCGGCGGGtt       >  1:1159531/1‑151 (MQ=255)
                                                                                                                                             cacGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCCGGCGGGtttt     >  1:1716686/1‑150 (MQ=255)
                                                                                                                                              acGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCCGGCGGGTTttgt   >  1:1587108/1‑151 (MQ=255)
                                                                                                                                               cGCCGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCCGGCGGGTTttgtt  >  1:957871/1‑151 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
ATCGGCAACGTGGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCCGTCAAGGAGCAGGCGGAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCGGTTGGCAGAGCCATGCTGTAC‑GAGAAAGAAGACACGCTGTCTGATCACATTGAGTCCTACGGGATCCGCTCG‑CTTTAACTGAGGTAATTATGATCATGCTGATTCTCGCGCCTCTGGTGGGCGTGCTGGGTGCGCTTTTGCTGGCGTATGGTGCCTGGCTGATTTATCCCCCGGCGGGTTTTGTT  >  NC_000913/1205352‑1205644

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A