Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F50 I1 R1 163 55.0 1534755 98.6% 1513268 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,380,055 T→C T197A (ACT→GCT)  menF ← isochorismate synthase 2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,380,0550TC100.0% 214.1 / NA 58T197A (ACT→GCT) menFisochorismate synthase 2
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (26/32);  total (26/32)

GCCGCCGCCATAACCGTTCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGTTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAACCCAGGCAAGGGCTTGATACTCAC  >  NC_000913/2379908‑2380202
                                                                                                                                                   |                                                                                                                                                   
gccgccgccATAACCGTTCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGc                                                                                                                                                  >  1:518172/1‑151 (MQ=255)
  cgccgccATAACCGTTCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGccc                                                                                                                                                <  2:64275/151‑1 (MQ=255)
     cgccATAACCGTTCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCcgag                                                                                                                                             <  1:394816/151‑1 (MQ=255)
        cATAACCGTTCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCcgagcga                                                                                                                                          <  1:701623/151‑1 (MQ=255)
            aCCGTTCCGGTGAAGAGCCAAGAAACGCCTTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGAAGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCgcgcgagc                                                                                                                                        <  2:237501/149‑1 (MQ=255)
            aCCGTTCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGcac                                                                                                                                      >  2:733085/1‑151 (MQ=255)
             ccGTTCCGGTGAAGAGCCAAGAAAAGCATTTTTGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGcacc                                                                                                                                     >  1:177111/1‑151 (MQ=255)
              cGTTCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGcacc                                                                                                                                     >  2:368674/1‑150 (MQ=255)
                ttCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACt                                                                                                                                  >  2:180222/1‑151 (MQ=255)
                    ggTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGt                                                                                                                              >  2:362764/1‑151 (MQ=255)
                         agagCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCAACACTTTGTCGAGc                                                                                                                         >  2:153086/1‑151 (MQ=255)
                              cAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCAcc                                                                                                                    >  2:146427/1‑151 (MQ=255)
                              cAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCAcc                                                                                                                    <  2:306044/151‑1 (MQ=255)
                                aGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCAcc                                                                                                                    >  2:438085/1‑149 (MQ=255)
                                              gCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGGTTTc                                                                                                    <  2:167689/151‑1 (MQ=255)
                                                 aTCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGtt                                                                                                 >  1:196992/1‑151 (MQ=255)
                                                  tCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGtt                                                                                                 <  2:196984/150‑1 (MQ=255)
                                                   cAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGtgg                                                                                                <  1:239471/150‑3 (MQ=255)
                                                   cAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTg                                                                                                <  2:48105/150‑1 (MQ=255)
                                                    aaaGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGcc                                                                                              >  1:177992/1‑151 (MQ=255)
                                                      aGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGcc                                                                                              >  2:34466/1‑149 (MQ=255)
                                                              tAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGAtt                                                                                     >  1:61876/1‑150 (MQ=255)
                                                                 aaaTGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGAGTAAtt                                                                                 <  2:255682/151‑1 (MQ=255)
                                                                       tAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTcc                                                                           >  2:556453/1‑151 (MQ=255)
                                                                       tAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTcc                                                                           >  2:656639/1‑151 (MQ=255)
                                                                        aGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCa                                                                          <  2:103039/151‑1 (MQ=255)
                                                                        aGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACGTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCa                                                                          <  1:492903/151‑1 (MQ=255)
                                                                            attcagattcagTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGccc                                                                      >  1:453797/1‑151 (MQ=255)
                                                                                 gattcagTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGtttt                                                                 >  2:72428/1‑151 (MQ=255)
                                                                                  attcagTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCTATTAATTGCGTCCATCCCCTTTTg                                                                <  2:145896/151‑1 (MQ=255)
                                                                                     cagTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTcc                                                             >  1:588059/1‑151 (MQ=255)
                                                                                      agTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCg                                                            >  2:115884/1‑151 (MQ=255)
                                                                                       gTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCgg                                                           <  1:317896/151‑1 (MQ=255)
                                                                                       gTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCgg                                                           <  2:217704/151‑1 (MQ=255)
                                                                                         cgacgaCTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCAATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGcc                                                         >  2:164907/1‑151 (MQ=255)
                                                                                          gacgacTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGcc                                                         >  2:489517/1‑150 (MQ=255)
                                                                                             gacTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAgtg                                                     <  1:623598/151‑1 (MQ=255)
                                                                                               cTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGtgtt                                                   >  2:383614/1‑151 (MQ=255)
                                                                                                  gCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTgttgtt                                                <  2:82773/151‑1 (MQ=255)
                                                                                                  gCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTgttgtt                                                <  1:642056/151‑1 (MQ=255)
                                                                                                    aGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTtc                                               <  2:260051/150‑1 (MQ=255)
                                                                                                     gCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTtctc                                             <  2:373940/151‑1 (MQ=255)
                                                                                                       catcatCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTcgc                                           <  1:171421/151‑1 (MQ=255)
                                                                                                           atcGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGTGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCgt                                         >  1:359707/1‑149 (MQ=255)
                                                                                                             cgccgccgcGTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCgtggt                                      <  1:236546/150‑1 (MQ=255)
                                                                                                                   cgcgTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTaa                                >  1:232593/1‑150 (MQ=255)
                                                                                                                    gcgTTGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAAt                              <  1:34467/151‑1 (MQ=255)
                                                                                                                        tGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTa                           <  1:221663/150‑1 (MQ=255)
                                                                                                                        tGACCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTa                           <  1:434881/150‑1 (MQ=255)
                                                                                                                          aCCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAAcc                        <  2:588967/151‑1 (MQ=255)
                                                                                                                          aCCGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAAcc                        <  2:94201/151‑1 (MQ=255)
                                                                                                                           ccGGACTTGCGAGATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAAccc                       >  1:411855/1‑151 (MQ=255)
                                                                                                                            cGGACTTGCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAAccc                       >  2:219961/1‑150 (MQ=255)
                                                                                                                                   gCGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAACCCAGGCAAgg               <  2:443763/151‑1 (MQ=255)
                                                                                                                                    cGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAACCCAGGCAAggg              <  1:588404/151‑1 (MQ=255)
                                                                                                                                    cGAAATGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAACCCAGGCAAggg              <  1:388901/151‑1 (MQ=255)
                                                                                                                                      aaaTGCAGGTCAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAACCCAGGCAAGGGCt            <  1:312789/151‑1 (MQ=255)
                                                                                                                                                cAGCTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAACCCAGGCAAGGGCTTGATACTCAc  <  1:715179/151‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
GCCGCCGCCATAACCGTTCCGGTGAAGAGCCAAGAAAAGCATTTTCGCCATCAAAGGCCATGTAAAAATGGTAGCAATTCAGATTCAGTCGACGACTGGCAGCCATCATCGCCGCCGCGTTGACCGGACTTGCGAAATGCAGGTCAGTTGCCCGAGCGAGCACCACTTTGTCGAGCTCACCTTCGGCGATGGTTTTCGTTGCCAGTTCGATTAATTGCGTCCAGCCCGTTTTGTCCGGCCAGTGTTGTTCTCGCGTGGTGGTTAAATGTAACCCAGGCAAGGGCTTGATACTCAC  >  NC_000913/2379908‑2380202

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A