Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F50 I1 R1	157	93.7	2947622	98.1%	2891617	150.3

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	681,014	A→G	E268G (GAA→GGA)	djlC →	J domain‑containing HscC co‑chaperone; Hsc56

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	681,014	0	A	G	100.0%	262.4 / NA	69	E268G (GAA→GGA)	djlC	J domain‑containing HscC co‑chaperone; Hsc56
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (35/34); total (35/34)

CATCGCAAACTGTTGCGCTGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGAAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCGGAGCATGGTAGATG  >  NC_000913/680866‑681160

cATCGCAAACTGTTGCGCTGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGgaa                                                                                                                                                  <  2:197998/151‑1 (MQ=255)

             tGCGCTGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTTCTGTCGCTCCACAGTGGCAAACGGAAGAACCAGAAAGCGAAGGTGACCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGcc                                                                                                                                       >  2:1193939/1‑149 (MQ=255)

              gcgcTGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGAt                                                                                                                                    >  1:500716/1‑151 (MQ=255)

              gcgcTGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTAATTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGa                                                                                                                                     >  1:757347/1‑150 (MQ=255)

               cgcTGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGAt                                                                                                                                    >  2:1182033/1‑150 (MQ=255)

                 cTGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGGGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGAtctc                                                                                                                                 >  2:987063/1‑151 (MQ=255)

                  tGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATctct                                                                                                                                >  2:423704/1‑151 (MQ=255)

                  tGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCCCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGAtctc                                                                                                                                 >  2:1250905/1‑150 (MQ=255)

                   ggTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATctct                                                                                                                                >  1:467595/1‑150 (MQ=255)

                      aCAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTgcgc                                                                                                                            <  1:1293443/151‑1 (MQ=255)

                       cAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGcgcg                                                                                                                           >  1:325466/1‑151 (MQ=255)

                       cAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGcgcg                                                                                                                           <  2:608174/151‑1 (MQ=255)

                          cTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTAc                                                                                                                        >  1:774692/1‑151 (MQ=255)

                            cGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACt                                                                                                                       >  2:1460700/1‑150 (MQ=255)

                            cGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTg                                                                                                                      <  2:921135/151‑1 (MQ=255)

                             ggTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTAc                                                                                                                        <  2:584506/148‑1 (MQ=255)

                             ggTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTgg                                                                                                                     <  1:1306199/151‑1 (MQ=255)

                              gTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGGGGCAAACGGAAAAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAAAGGTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTggg                                                                                                                    >  2:107874/1‑151 (MQ=255)

                               tGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTggg                                                                                                                    >  1:27295/1‑150 (MQ=255)

                                gCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGa                                                                                                                   <  1:1072776/150‑1 (MQ=255)

                                 cAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGaaa                                                                                                                 <  2:120144/151‑1 (MQ=255)

                                  aaaCAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAAAGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGaa                                                                                                                  >  1:1185766/1‑149 (MQ=255)

                                   aaCAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGt                                                                                                               >  1:1436755/1‑151 (MQ=255)

                                    aCAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGAGGCAAACGGGAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAAAGTTTTTACTGCGGCGCGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAAtt                                                                                                              >  2:824227/1‑151 (MQ=255)

                                            ggCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATc                                                                                                       <  1:803670/150‑1 (MQ=255)

                                            ggCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCt                                                                                                      >  1:234183/1‑151 (MQ=255)

                                             gCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTa                                                                                                     <  2:948862/151‑1 (MQ=255)

                                             gCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTa                                                                                                     <  1:1010538/151‑1 (MQ=255)

                                               ggAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTac                                                                                                    >  1:102778/1‑150 (MQ=255)

                                                     cATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGc                                                                                              <  2:124041/150‑1 (MQ=255)

                                                     cATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCt                                                                                             <  2:651988/151‑1 (MQ=255)

                                                      aTTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTg                                                                                            <  2:149077/151‑1 (MQ=255)

                                                      aTTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTg                                                                                            <  2:1042242/151‑1 (MQ=255)

                                                                  cAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATttgttgt                                                                                <  1:1337168/151‑1 (MQ=255)

                                                                   aaCAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATttgttgtt                                                                               <  1:801237/151‑1 (MQ=255)

                                                                    aCAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATttgttgttg                                                                              <  2:186810/151‑1 (MQ=255)

                                                                    aCAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATttgttgttg                                                                              <  1:843655/151‑1 (MQ=255)

                                                                    aCAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATttgttgttg                                                                              >  2:622453/1‑151 (MQ=255)

                                                                     cAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGc                                                                             >  2:726412/1‑151 (MQ=255)

                                                                        tGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGt                                                                          >  1:642719/1‑151 (MQ=255)

                                                                        tGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGt                                                                          >  2:1278450/1‑151 (MQ=255)

                                                                         ggCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTg                                                                         <  2:1372435/151‑1 (MQ=255)

                                                                           cAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGa                                                                       <  2:296439/151‑1 (MQ=255)

                                                                            aaaCGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTgg                                                                        >  2:868349/1‑149 (MQ=255)

                                                                                   agaaCCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGc                                                                 <  1:468849/149‑1 (MQ=255)

                                                                                             aGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCgg                                                     <  2:1413880/151‑1 (MQ=255)

                                                                                               cGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGat                                                   <  1:1289993/151‑1 (MQ=255)

                                                                                                gAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGat                                                   >  2:646013/1‑150 (MQ=255)

                                                                                                 aaGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGatt                                                  >  1:389112/1‑150 (MQ=255)

                                                                                                  aGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGattat                                                >  1:924907/1‑151 (MQ=255)

                                                                                                     tGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTc                                             >  1:1223544/1‑151 (MQ=255)

                                                                                                      gCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTcg                                            >  2:505586/1‑151 (MQ=255)

                                                                                                      gCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTcg                                            <  1:1251004/151‑1 (MQ=255)

                                                                                                      gCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTcg                                            <  2:953349/151‑1 (MQ=255)

                                                                                                      gCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTc                                             <  1:976272/150‑1 (MQ=255)

                                                                                                         cGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGt                                         >  1:572327/1‑151 (MQ=255)

                                                                                                            tATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGttat                                      >  1:95705/1‑151 (MQ=255)

                                                                                                              ttACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACTCAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGttatt                                     <  1:152656/150‑1 (MQ=255)

                                                                                                               tACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGttatta                                    <  2:1159275/150‑1 (MQ=255)

                                                                                                                   tgtgtgCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGAt                               >  1:1218018/1‑151 (MQ=255)

                                                                                                                      gtgCACAACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGt                            >  1:318848/1‑151 (MQ=255)

                                                                                                                         cacaACGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTAt                         <  1:1112670/151‑1 (MQ=255)

                                                                                                                            aaCGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGa                      <  2:1197345/151‑1 (MQ=255)

                                                                                                                              cGTTTGTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAg                    <  1:423760/151‑1 (MQ=255)

                                                                                                                                   gTACTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCgg               >  1:190246/1‑151 (MQ=255)

                                                                                                                                     aCTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCgg               >  1:1098361/1‑149 (MQ=255)

                                                                                                                                     aCTGCGGCGAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCgg               >  1:1090939/1‑149 (MQ=255)

                                                                                                                                        gcggcgAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCGGAGCa           <  1:505643/150‑1 (MQ=255)

                                                                                                                                            cgAGGGGGGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCGGAGCATGGTa      <  1:1194038/151‑1 (MQ=255)

                                                                                                                                               ggggggAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCGGAGCATGGTAGAt   <  2:467540/151‑1 (MQ=255)

                                                                                                                                                ggggGAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCGGAGCATGGTAGATg  <  2:1169243/151‑1 (MQ=255)

CATCGCAAACTGTTGCGCTGGTACAGCTCGGTGCAAACAGGTATGGCGGAACTCATTCCTGTCGCTCAACAGTGGCAAACGGAAGAACCAGAAAGCGAAGATGCCCGGTATTACTTGTGTGCACAACGTTTGTACTGCGGCGAGGGGGAAAGCCTGCTTGCCGATCTCTGCGCGTACTGGGAAAGTTACCCATCTACACAAGCTGATAATTTGTTGTTGCAGTGGAGCAAGCGTCATTGCCCGGATTATTTCGCGTTATTAGTGATGGTTATCGAAGCGCGGAGCATGGTAGATG  >  NC_000913/680866‑681160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A