mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 16,804 | T→C | I34V (ATC→GTC) | hokC ← | toxic membrane protein, small |
| RA | 60,012 | T→A | D112V (GAT→GTT) | rluA ← | dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM‑dependent |
| RA | 82,440 | C→A | A364S (GCG→TCG) | leuA ← | 2‑isopropylmalate synthase |
| RA | 109,644 | A→G | T456A (ACT→GCT) | secA → | preprotein translocase subunit, ATPase |
| RA | 115,331 | C→T | G132S (GGT→AGT) | hofC ← | assembly protein in type IV pilin biogenesis, transmembrane protein |
| RA | 155,698 | A→G | G168G (GGT→GGC) | yadV ← | putative periplasmic pilin chaperone |
| RA | 176,263 | C→T | A386V (GCG→GTG) | clcA → | H(+)/Cl(‑) exchange transporter |
| RA | 218,942 | A→G | V218A (GTT→GCT) | tsaA ← | tRNA‑Thr(GGU) m(6)t(6)A37 methyltransferase, SAM‑dependent |
| RA | 231,261 | T→C | L47P (CTG→CCG) | yafD → | endo/exonuclease/phosphatase family protein |
| MC JC | 257,908 | Δ776 bp | [crl] | [crl] | |
| RA | 265,090 | A→G | A39A (GCT→GCC) | yafX ← | CP4‑6 prophage; uncharacterized protein |
| RA | 266,175 | A→G | Y127H (TAC→CAC) | yafY ← | lipoprotein, inner membrane; degP regulator; CP4‑6 prophage |
| RA | 304,834 | A→G | R124R (CGT→CGC) | ecpE ← | ECP production pilus chaperone |
| RA | 339,165 | G→A | D281N (GAC→AAC) | yahG → | DUF1116 family protein |
| RA | 355,718 | T→C | L266P (CTG→CCG) | codB → | cytosine transporter |
| RA | 380,022 | (G)10→11 | intergenic (‑141/+47) | frmR ← / ← yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| RA | 409,847 | T→C | H58R (CAC→CGC) | rdgC ← | nucleoid‑associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function |
| RA | 438,035 | G→A | T34I (ACA→ATA) | yajO ← | 2‑carboxybenzaldehyde reductase |
| RA | 474,819 | A→G | F115L (TTC→CTC) | tesB ← | acyl‑CoA thioesterase 2 |
| RA | 483,817 | A→G | F196S (TTC→TCC) | acrB ← | multidrug efflux system protein |
| RA | 531,493 | T→A | K243N (AAA→AAT) | allS ← | allD operon transcriptional activator |
| RA | 561,299 | A→G | T535A (ACC→GCC) | sfmD → | putative outer membrane export usher protein |
| RA | 577,085 | G→A | intergenic (‑260/‑313) | nmpC ← / → essD | DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage/DLP12 prophage; putative phage lysis protein |
| RA | 611,255 | C→T | A414T (GCT→ACT) | fepA ← | ferrienterobactin outer membrane transporter |
| RA | 617,735 | A→G | E1193E (GAA→GAG) | entF → | enterobactin synthase multienzyme complex component, ATP‑dependent |
| RA | 643,563 | C→T | L135L (CTG→CTA) | rnk ← | regulator of nucleoside diphosphate kinase |
| RA | 681,014 | A→G | E268G (GAA→GGA) | djlC → | J domain‑containing HscC co‑chaperone; Hsc56 |
| RA | 706,802 | A→G | N237S (AAC→AGC) | glnS → | glutamyl‑tRNA synthetase |
| RA | 721,504 | A→G | V77A (GTG→GCG) | kdpE ← | response regulator in two‑component regulatory system with KdpD |
| RA | 741,429 | A→G | S376S (TCT→TCC) | dtpD ← | dipeptide and tripeptide permease D |
| RA | 767,750 | C→T | V589V (GTC→GTT) | mngA → | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| RA | 781,084 | T→C | noncoding (17/76 nt) | valZ → | tRNA‑Val |
| RA | 807,115 | T→C | Q56R (CAA→CGA) | ybhC ← | acyl‑CoA thioesterase, lipoprotein |
| RA | 846,224 | A→G | G80G (GGT→GGC) | glnQ ← | glutamine transporter subunit |
| RA | 860,657 | A→G | R650R (CGT→CGC) | ybiW ← | putative pyruvate formate lyase |
| RA | 922,723 | G→A | intergenic (‑133/‑190) | cspD ← / → clpS | inhibitor of DNA replication, cold shock protein homolog/regulatory protein for ClpA substrate specificity |
| RA | 939,609 | C→T | A61V (GCG→GTG) | serS → | seryl‑tRNA synthetase |
| JC JC | 944,912 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | intergenic (+16/+14) | dmsC → / ← ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/putative isochorismatase family hydrolase |
| RA | 968,630 | A→G | K89E (AAG→GAG) | lpxK → | lipid A 4'kinase |
| RA | 1,034,488 | C→T | P412L (CCG→CTG) | hyaB → | hydrogenase 1, large subunit |
| RA | 1,097,864 | A→G | intergenic (‑212/‑22) | serX ← / → ghrA | tRNA‑Ser/glyoxylate/hydroxypyruvate reductase A |
| RA | 1,114,450 | A→G | R347R (CGT→CGC) | mdtG ← | putative drug efflux system protein |
| RA | 1,125,128 | C→T | G67S (GGT→AGT) | mdtH ← | multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin |
| RA | 1,154,782 | A→G | E224G (GAA→GGA) | yceG → | septation protein, ampicillin sensitivity |
| RA | 1,246,015 | T→C | A454A (GCA→GCG) | treA ← | periplasmic trehalase |
| RA | 1,258,521 | (T)7→6 | intergenic (‑8/‑270) | pth ← / → ychH | peptidyl‑tRNA hydrolase/DUF2583 family putative inner membrane protein |
| RA | 1,293,491 | C→T | intergenic (‑569/‑36) | hns ← / → tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| RA | 1,312,615 | G→A | S92S (AGC→AGT) | yciB ← | IspA family inner membrane protein |
| RA | 1,314,744 | T→C | T161A (ACT→GCT) | yciE ← | putative rubrerythrin/ferritin‑like metal‑binding protein |
| RA | 1,317,160 | A→G | P21P (CCT→CCC) | trpA ← | tryptophan synthase, alpha subunit |
| RA | 1,398,201 | G→A | P141L (CCG→CTG) | uspE ← | stress‑induced protein |
| RA | 1,400,623 | C→T | G384D (GGC→GAC) | abgT ← | p‑aminobenzoyl‑glutamate transporter; membrane protein |
| RA | 1,409,591 | G→A | T27T (ACG→ACA) | dbpA → | ATP‑dependent RNA helicase, specific for 23S rRNA |
| RA | 1,429,098 | T→C | V17A (GTA→GCA) | stfR → | Rac prophage; putative tail fiber protein |
| RA | 1,446,241 | A→G | intergenic (+35/+137) | ydbL → / ← feaR | DUF1318 family protein/transcriptional activator for tynA and feaB |
| RA | 1,466,123 | 4 bp→TGCT | pseudogene (732‑735/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,129 | T→C | pseudogene (738/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,466,141 | A→G | pseudogene (750/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| RA | 1,517,218 | C→T | intergenic (‑24/‑171) | yncL ← / → ydcX | stress‑induced small inner membrane enterobacterial protein/DUF2566 family protein |
| RA | 1,597,313 | (C)7→8 | pseudogene (675/3861 nt) | yneO ← | pseudogene, AidA homolog |
| RA | 1,692,029 | T→C | T275A (ACG→GCG) | uidC ← | putative outer membrane porin for beta‑glucuronides porin protein |
| RA | 1,715,182 | (C)5→6 | coding (708/864 nt) | pdxY ← | pyridoxamine kinase |
| RA | 1,762,052 | T→C | N154S (AAC→AGC) | sufC ← | SufBCD Fe‑S cluster assembly scaffold protein, ATP‑binding protein |
| RA | 1,768,998 | T→C | intergenic (‑313/‑76) | ydiJ ← / → ydiK | putative FAD‑linked oxidoreductase/UPF0118 family inner membrane protein |
| RA | 1,863,313 | T→C | A181A (GCT→GCC) | gapA → | glyceraldehyde‑3‑phosphate dehydrogenase A |
| RA | 1,888,259 | C→T | A496A (GCG→GCA) | fadD ← | acyl‑CoA synthetase (long‑chain‑fatty‑acid‑‑CoA ligase) |
| RA | 1,894,752 | T→C | intergenic (‑21/‑53) | yoaH ← / → pabB | UPF0181 family protein/aminodeoxychorismate synthase, subunit I |
| RA | 1,922,198 | A→G | E26E (GAA→GAG) | yebW → | uncharacterized protein |
| RA | 1,928,306 | G→A | V178V (GTC→GTT) | ptrB ← | protease II |
| RA | 1,931,728 | G→A | R283H (CGT→CAT) | purT → | phosphoribosylglycinamide formyltransferase 2 |
| RA | 1,947,662 | T→C | T164A (ACC→GCC) | yebC ← | UPF0082 family protein |
| MC JC | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| RA | 2,000,046 | G→A | R114C (CGC→TGC) | fliY ← | cystine transporter subunit |
| RA | 2,025,889 | G→A | A127T (GCC→ACC) | yedP → | putative mannosyl‑3‑phosphoglycerate phosphatase |
| RA | 2,026,299 | G→A | G263G (GGG→GGA) | yedP → | putative mannosyl‑3‑phosphoglycerate phosphatase |
| RA | 2,096,784 | T→C | T57T (ACT→ACC) | hisI → | phosphoribosyl‑AMP cyclohydrolase and phosphoribosyl‑ATP pyrophosphatase |
| RA | 2,117,002 | T→C | T42T (ACA→ACG) | wcaL ← | putative glycosyl transferase |
| RA | 2,159,008 | T→C | V208A (GTC→GCC) | mdtC → | multidrug efflux system, subunit C |
| RA | 2,164,440 | G→A | P55P (CCG→CCA) | baeR → | response regulator in two‑component regulatory system with BaeS |
| RA | 2,173,363 | Δ2 bp | intergenic (‑1/+1) | gatC ← / ← gatC | pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC/pseudogene, galactitol‑specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol‑specific enzyme IIC |
| RA | 2,224,908 | C→T | intergenic (‑38/+136) | pbpG ← / ← yohC | D‑alanyl‑D‑alanine endopeptidase/Yip1 family inner membrane protein |
| RA | 2,241,409 | T→C | Q87R (CAG→CGG) | galS ← | galactose‑ and fucose‑inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor |
| RA | 2,273,106 | C→T | T248I (ACC→ATC) | yejA → | microcin C ABC transporter periplasmic binding protein |
| RA | 2,355,127 | T→C | V288A (GTA→GCA) | glpB → | anaerobic sn‑glycerol‑3‑phosphate dehydrogenase membrane anchor subunit |
| RA | 2,359,249 | T→C | T302A (ACC→GCC) | rhmT ← | putative L‑rhamnonate transporter |
| RA | 2,406,631 | G→A | A4V (GCA→GTA) | lrhA ← | transcriptional repressor of flagellar, motility and chemotaxis genes |
| RA | 2,453,901 | G→A | pseudogene (1101/2646 nt) | yfcU ← | pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein |
| RA | 2,458,447 | T→C | H238R (CAC→CGC) | fadJ ← | enoyl‑CoA hydratase/epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase |
| RA | 2,467,446 | A→G | K301R (AAG→AGG) | intS → | CPS‑53 (KpLE1) prophage; putative prophage CPS‑53 integrase |
| RA | 2,476,595 | A→G | pseudogene (12/15 nt) | pawZ → | tRNA‑OTHER |
| RA | 2,555,334 | G→A | A132V (GCC→GTC) | eutK ← | putative ethanol utilization carboxysome structural protein |
| RA | 2,579,841 | T→C | L69P (CTG→CCG) | tktB → | transketolase 2, thiamine triphosphate‑binding |
| RA | 2,598,854 | A→G | S4S (TCT→TCC) | bamC ← | BamABCDE complex OM biogenesis lipoprotein |
| RA | 2,609,458 | T→C | R324R (CGT→CGC) | hyfG → | hydrogenase 4, subunit |
| RA | 2,611,827 | T→C | V124A (GTG→GCG) | hyfJ → | putative processing element hydrogenase 4 |
| JC | 2,636,790 | (TTC)3→2 | coding (565‑567/1473 nt) | der ← | GTPase; multicopy suppressor of ftsJ |
| RA | 2,647,150 | G→A | A59V (GCT→GTT) | pbpC ← | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein |
| RA | 2,647,909 | T→C | K1460R (AAA→AGA) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,647,979 | T→C | T1437A (ACG→GCG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM; anti‑host protease defense factor; periplasmic inner membrane‑anchored lipoprotein |
| RA | 2,662,523 | A→G | intergenic (‑392/+60) | iscR ← / ← trmJ | isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress‑ and iron starvation‑inducible; autorepressor/tRNA mC32,mU32 2'‑O‑methyltransferase, SAM‑dependent |
| RA | 2,767,140 | T→C | L53L (TTG→CTG) | rnlB → | CP4‑57 prophage; uncharacterized protein |
| RA | 2,777,617 | T→C | A55A (GCT→GCC) | ypjF → | CP4‑57 prophage; toxin of the YpjF‑YfjZ toxin‑antitoxin system |
| RA | 2,780,330 | G→A | G799G (GGC→GGT) | ypjA ← | adhesin‑like autotransporter |
| RA | 2,854,255 | T→C | R334R (CGT→CGC) | hypE → | carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein |
| RA | 2,892,689 | T→C | G11G (GGT→GGC) | ygcN → | putative oxidoreductase |
| RA | 2,910,220 | C→T | G156S (GGC→AGC) | mazG ← | nucleoside triphosphate pyrophosphohydrolase |
| RA | 2,912,885 | A→G | I256T (ATC→ACC) | relA ← | (p)ppGpp synthetase I/GTP pyrophosphokinase |
| RA | 2,914,809 | A→G | A64A (GCT→GCC) | rlmD ← | 23S rRNA m(5)U1939 methyltransferase, SAM‑dependent |
| RA | 2,960,839 | A→G | R530R (CGT→CGC) | recC ← | exonuclease V (RecBCD complex), gamma chain |
| RA | 2,985,465 | A→G | V43A (GTT→GCT) | yqeF ← | short chain acyltransferase |
| RA | 3,011,590 | G→A | V44I (GTC→ATC) | yqeA → | putative amino acid kinase |
| RA | 3,053,637 | T→C | I402V (ATC→GTC) | pepP ← | proline aminopeptidase P II |
| RA | 3,086,618 | A→G | intergenic (+216/‑88) | yqgC → / → metK | uncharacterized protein/S‑adenosylmethionine synthetase |
| RA | 3,111,537 | T→C | pseudogene (554/963 nt) | yghE ← | pseudogene, secretion pathway protein, L‑type protein homology; putative general secretion pathway for protein export (GSP) |
| RA | 3,136,817 | T→C | Q569R (CAA→CGA) | gss ← | glutathionylspermidine amidase and glutathionylspermidine synthetase |
| RA | 3,272,271 | Δ1 bp | coding (481/885 nt) | garR ← | tartronate semialdehyde reductase |
| RA | 3,276,550 | C→T | G423G (GGC→GGT) | garD → | D‑galactarate dehydrogenase |
| RA | 3,280,801 | T→C | pseudogene (101/375 nt) | agaW → | pseudogene, N‑acetylgalactosamine‑specific enzyme IIC component of PTS;enzyme; Central intermediary metabolism: Amino sugars; PTS system N‑acetylgalactosameine‑specific IIC component 2 |
| RA | 3,358,491 | A→G | H1256R (CAC→CGC) | gltB → | glutamate synthase, large subunit |
| RA | 3,376,403 | T→C | D125G (GAC→GGC) | sspB ← | ClpXP protease specificity enhancing factor |
| RA | 3,377,215 | A→G | L69P (CTG→CCG) | sspA ← | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog |
| RA | 3,386,639 | T→C | N517S (AAT→AGT) | aaeB ← | p‑hydroxybenzoic acid efflux system component |
| RA | 3,429,355 | G→A | W40* (TGG→TGA) | yrdA → | bacterial transferase hexapeptide domain protein |
| RA | 3,432,487 | A→G | Y358Y (TAT→TAC) | smf ← | DNA recombination‑mediator A family protein |
| RA | 3,440,116 | T→C | D305G (GAC→GGC) | rpoA ← | RNA polymerase, alpha subunit |
| RA | 3,449,100 | T→C | T24A (ACG→GCG) | rplP ← | 50S ribosomal subunit protein L16 |
| RA | 3,462,560 | A→G | T73A (ACG→GCG) | gspJ → | putative general secretory pathway component, cryptic |
| RA | 3,502,861 | G→A | P174P (CCG→CCA) | frlC → | fructoselysine 3‑epimerase |
| RA | 3,515,565 | A→G | Y117H (TAC→CAC) | dam ← | DNA adenine methyltransferase |
| RA | 3,560,455 | +G | intergenic (‑2/+1) | glpR ← / ← glpR | pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon/pseudogene, DNA‑binding transcriptional repressor;regulator; Energy metabolism, carbon: Anaerobic respiration; repressor of the glp operon |
| RA | 3,571,794 | T→C | N570S (AAC→AGC) | glgB ← | 1,4‑alpha‑glucan branching enzyme |
| RA | 3,605,363 | A→G | M83T (ATG→ACG) | yhhM ← | DUF2500 family protein |
| RA | 3,612,540 | T→C | W226R (TGG→CGG) | yhhT → | UPF0118 family putative transporter |
| RA | 3,668,091 | T→C | E366E (GAA→GAG) | yhjA ← | putative cytochrome C peroxidase |
| RA | 3,691,676 | T→C | Y311C (TAC→TGC) | bcsB ← | regulator of cellulose synthase, cyclic di‑GMP binding |
| RA | 3,751,508 | T→C | T121A (ACC→GCC) | yiaT ← | putative outer membrane protein |
| RA | 3,815,808 | (A)8→7 | intergenic (‑40/+26) | pyrE ← / ← rph | orotate phosphoribosyltransferase/ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| RA | 3,928,879 | A→G | V242A (GTG→GCG) | viaA ← | stimulator of RavA ATPase activity; von Willebrand factor domain protein |
| RA | 3,936,721 | T→C | G148G (GGT→GGC) | rbsB → | D‑ribose ABC transporter periplasmic binding protein; ribose chemotaxis receptor |
| RA | 3,937,495 | A→G | S68G (AGC→GGC) | rbsK → | ribokinase |
| RA | 4,003,303 | A→G | R292R (CGT→CGC) | rarD ← | putative chloramphenical resistance permease |
| RA | 4,099,540 | A→G | V329A (GTG→GCG) | rhaT ← | L‑rhamnose:proton symporter |
| RA | 4,128,316 | A→G | V27A (GTT→GCT) | metJ ← | transcriptional repressor, S‑adenosylmethionine‑binding |
| RA | 4,140,495 | T→C | D576G (GAT→GGT) | frwA ← | putative PTS enzyme: Hpr, enzyme I and II components |
| RA | 4,185,098 | A→G | Y1285C (TAC→TGC) | rpoB → | RNA polymerase, beta subunit |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| RA | 4,366,223 | A→G | F184S (TTC→TCC) | dcuA ← | C4‑dicarboxylate antiporter |
| RA | 4,399,151 | Δ1 bp | coding (1740/1848 nt) | mutL → | methyl‑directed mismatch repair protein |
| RA | 4,401,589 | C→T | D306D (GAC→GAT) | hflX → | GTPase, stimulated by 50S subunit binding; Mn(2+) homeostasis regulator |
| RA | 4,410,053 | (T)9→8 | intergenic (+47/‑80) | rlmB → / → yjfI | 23S rRNA mG2251 2'‑O‑ribose methyltransferase, SAM‑dependent/DUF2170 family protein |
| RA | 4,460,207 | T→C | D53G (GAC→GGC) | nrdG ← | anaerobic ribonucleotide reductase activating protein |
| RA | 4,469,762 | T→C | V713A (GTG→GCG) | mgtA → | magnesium transporter |
| RA | 4,513,835 | T→C | E158E (GAA→GAG) | fecB ← | ferric citrate ABC transporter periplasmic binding protein |
| RA | 4,516,435 | G→A | S81S (AGC→AGT) | fecA ← | TonB‑dependent outer membrane ferric citrate transporter and signal transducer; ferric citrate extracelluar receptor; FecR‑interacting protein |
| RA | 4,552,990 | C→T | C30C (TGC→TGT) | uxuB → | D‑mannonate oxidoreductase, NAD‑dependent |
| RA | 4,575,814 | A→G | pseudogene (1896/2937 nt) | yjiV → | pseudogene; conserved hypothetical protein |
| RA | 4,619,179 | A→G | V317V (GTA→GTG) | deoA → | thymidine phosphorylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1466145–1466203 | 1466509 | 307–365 | 52 [51] | [51] 52 | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| * | * | ÷ | NC_000913 | 1531991–1532124 | 1532844–1532728 | 605–854 | 52 [49] | [51] 52 | ydcC | H repeat‑associated putative transposase |
| * | * | ÷ | NC_000913 | 3423733–3424234 | 3424564–3424238 | 5–832 | 53 [51] | [51] 52 | [rrfD]–[rrlD] | [rrfD], [rrlD] |
| * | * | ÷ | NC_000913 | 3762346–3764074 | 3765243–3764077 | 4–2898 | 52 [51] | [51] 52 | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | * | ÷ | NC_000913 | 3944135–3945567 | 3946562–3946229 | 663–2428 | 52 [51] | [51] 52 | rrlC | 23S ribosomal RNA of rrnC operon |
| * | * | ÷ | NC_000913 | 4153383 | 4153636 | 254 | 52 [50] | [51] 52 | ppc/argE | phosphoenolpyruvate carboxylase/acetylornithine deacetylase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 36 (0.390) | 57 (0.690) | 52/266 | 1.2 | 68.2% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 21 (0.250) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 36 (0.390) | 61 (0.730) | 50/266 | 1.3 | 69.7% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 21 (0.250) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 98 (1.080) | 79/290 | 0.1 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||