mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.29.0 revision 8f9c342918e4
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 854 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,984,441 | 0 | A | C | 53.4% | 86.7 / 119.4 | 73 | G384G (GGT→GGG) | yqeF | short chain acyltransferase |
| * | NC_000913 | 354,288 | 0 | T | G | 52.8% | 113.0 / 156.7 | 89 | V528G (GTG→GGG) | prpE | propionate‑‑CoA ligase |
| * | NC_000913 | 1,245,234 | 0 | G | T | 49.4% | 96.4 / 49.7 | 81 | L25F (TTG→TTT) | ycgY | uncharacterized protein |
| * | NC_000913 | 298,960 | 0 | A | C | 49.3% | 92.6 / 33.1 | 69 | Y659D (TAT→GAT) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 357,890 | 0 | C | A | 48.3% | 12.8 / 18.5 | 29 | L267F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 941,713 | 0 | T | G | 47.2% | 98.2 / 39.2 | 72 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase, anaerobic, subunit A |
| * | NC_000913 | 1,222,233 | 0 | G | A | 45.6% | 62.7 / 37.8 | 69 | pseudogene (60/75 nt) | ycgH | pseudogene; putative ATP‑binding component of a transport system |
| * | NC_000913 | 1,079,468 | 0 | A | G | 45.1% | 105.3 / 23.4 | 71 | D55G (GAT→GGT) | putP | proline:sodium symporter |
| * | NC_000913 | 1,969,794 | 0 | A | C | 45.0% | 80.8 / 28.2 | 60 | G397G (GGT→GGG) | tap | methyl‑accepting protein IV |
| * | NC_000913 | 599,576 | 0 | T | G | 44.8% | 142.3 / 35.3 | 87 | V288G (GTG→GGG) | cusA | copper/silver efflux system, membrane component |
| * | NC_000913 | 121,507 | 0 | A | T | 44.6% | 128.9 / 50.5 | 92 | L15L (CTT→CTA) | aroP | aromatic amino acid transporter |
| * | NC_000913 | 802,118 | 0 | A | C | 44.3% | 171.2 / 21.0 | 98 | T78P (ACC→CCC) | ybhI | putative DASS family tricarboxylate or dicarboxylate transporter |
| * | NC_000913 | 907,602 | 0 | A | C | 44.0% | 123.3 / 19.5 | 75 | G227G (GGT→GGG) | ybjT | putative NAD‑dependent oxidoreductase |
| * | NC_000913 | 4,258,974 | 0 | T | G | 44.0% | 131.5 / 10.6 | 76 | G411G (GGT→GGG) | dinF | oxidative stress resistance protein; putative MATE family efflux pump; UV and mitomycin C inducible protein |
| * | NC_000913 | 1,097,581 | 0 | A | G | 43.8% | 132.6 / 26.8 | 80 | noncoding (72/88 nt) | serX | tRNA‑Ser |
| * | NC_000913 | 298,953 | 0 | A | C | 43.5% | 111.2 / 23.7 | 70 | V661G (GTG→GGG) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| * | NC_000913 | 3,671,415 | 0 | C | T | 43.4% | 97.7 / 43.6 | 76 | K160K (AAG→AAA) | yhjB | putative DNA‑binding transcriptional response regulator |
| * | NC_000913 | 3,001,164 | 0 | A | C | 43.2% | 124.4 / 18.1 | 74 | T274P (ACC→CCC) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| * | NC_000913 | 357,887 | 0 | C | A | 42.9% | 27.1 / 10.4 | 28 | L268F (TTG→TTT) | cynR | transcriptional activator of cyn operon; autorepressor |
| * | NC_000913 | 3,133,302 | 0 | T | G | 42.7% | 152.3 / 22.5 | 90 | H219P (CAC→CCC) | yghS | putative ATP‑binding protein |