Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F50 I1 R1 157 93.7 2947622 98.1% 2891617 150.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,762,052 T→C N154S (AAC→AGC)  sufC ← SufBCD Fe‑S cluster assembly scaffold protein, ATP‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,762,0520TC100.0% 389.7 / NA 105N154S (AAC→AGC) sufCSufBCD Fe‑S cluster assembly scaffold protein, ATP‑binding protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (49/56);  total (49/56)

Only 100 of 105 total aligned reads displayed.

TGCGTAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGTTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCTGCGCAC  >  NC_000913/1761905‑1762197
                                                                                                                                                   |                                                                                                                                                 
tGCGTAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTgc                                                                                                                                                >  2:894237/1‑151 (MQ=255)
tGCGTAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGAACACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTg                                                                                                                                                 >  2:55743/1‑150 (MQ=255)
 gCGTAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTgcg                                                                                                                                               >  1:1058922/1‑151 (MQ=255)
 gCGTAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTgc                                                                                                                                                <  2:1127581/150‑1 (MQ=255)
  cGTAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTgcg                                                                                                                                               >  1:973207/1‑150 (MQ=255)
   gTAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCt                                                                                                                                             >  2:1316420/1‑151 (MQ=255)
    tAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCtt                                                                                                                                            >  2:709465/1‑151 (MQ=255)
     aaCAATGTTGAATGAGCGCTTGCCATCGCGAGGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATTTCCTGCCCGGAGTCGGACTCATCAAGAATGAATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTgcg                                                                                                                                               <  1:371346/147‑1 (MQ=255)
     aaCAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCtt                                                                                                                                            <  2:444443/150‑1 (MQ=255)
     aaCAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCtt                                                                                                                                            <  2:1169918/150‑1 (MQ=255)
      aCAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCtttt                                                                                                                                          <  2:1396650/151‑1 (MQ=255)
        aaTGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTtc                                                                                                                                        >  1:78372/1‑151 (MQ=255)
         atgatgAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTtct                                                                                                                                       <  2:1019053/151‑1 (MQ=255)
         atgatgAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTtct                                                                                                                                       <  2:449955/151‑1 (MQ=255)
           gatgaATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTtctc                                                                                                                                      <  2:906464/150‑1 (MQ=255)
           gatgaATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTcg                                                                                                                                     >  2:419206/1‑151 (MQ=255)
               aatgaGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTcgccgc                                                                                                                                 <  1:248019/151‑1 (MQ=255)
                  gaGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGccgccg                                                                                                                               <  1:580623/150‑1 (MQ=255)
                  gaGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCgg                                                                                                                              <  2:1158189/151‑1 (MQ=255)
                    gcgcTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGaa                                                                                                                            <  1:1293465/151‑1 (MQ=255)
                     cgcTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGaa                                                                                                                            <  1:1000430/150‑1 (MQ=255)
                      gcTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGaaa                                                                                                                           >  2:69/1‑150 (MQ=255)
                        ttGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAAc                                                                                                                        >  2:629652/1‑151 (MQ=255)
                        ttGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAAc                                                                                                                        >  1:966858/1‑151 (MQ=255)
                        ttGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAAc                                                                                                                        >  1:746727/1‑151 (MQ=255)
                         tGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGaaaaa                                                                                                                         <  1:1039286/149‑1 (MQ=255)
                           ccATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCaa                                                                                                                     <  2:881179/151‑1 (MQ=255)
                           ccATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCa                                                                                                                      <  1:1091190/150‑1 (MQ=255)
                             aTCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACg                                                                                                                   <  1:1458943/151‑1 (MQ=255)
                              tCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGt                                                                                                                  >  2:1459082/1‑151 (MQ=255)
                                    aGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTAcc                                                                                                             <  2:735717/150‑1 (MQ=255)
                                    aGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCg                                                                                                            >  2:586708/1‑151 (MQ=255)
                                     gCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGa                                                                                                           <  2:898609/151‑1 (MQ=255)
                                       gAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAAc                                                                                                         >  2:1177841/1‑151 (MQ=255)
                                        aGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACg                                                                                                        <  1:455408/151‑1 (MQ=255)
                                         gTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACg                                                                                                        <  2:633651/150‑1 (MQ=255)
                                            cACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGtt                                                                                                    <  2:1024214/151‑1 (MQ=255)
                                            cACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGt                                                                                                     <  1:333031/150‑1 (MQ=255)
                                             aCGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGtt                                                                                                    <  2:852934/150‑1 (MQ=255)
                                              cGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTta                                                                                                   >  2:113430/1‑150 (MQ=255)
                                               gCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTtaat                                                                                                 >  2:836772/1‑151 (MQ=255)
                                                ccATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTtaata                                                                                                <  1:317600/151‑1 (MQ=255)
                                                ccATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTtaat                                                                                                 <  2:821921/150‑1 (MQ=255)
                                                   tCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAAt                                                                                             >  1:518368/1‑151 (MQ=255)
                                                   tCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAAt                                                                                             >  1:265654/1‑151 (MQ=255)
                                                     ggCGACCATTTTTAATGCTTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATACCTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCTCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCt                                                                                           <  2:252232/151‑1 (MQ=255)
                                                     ggCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCt                                                                                           <  2:956682/151‑1 (MQ=255)
                                                     ggCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCt                                                                                           <  2:1199603/151‑1 (MQ=255)
                                                     ggCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCt                                                                                           >  1:1238682/1‑151 (MQ=255)
                                                         aCCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCg                                                                                       >  2:259168/1‑151 (MQ=255)
                                                                  aaTGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCtt                                                                                <  2:824424/149‑1 (MQ=255)
                                                                  aaTGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTc                                                                               <  1:984885/150‑1 (MQ=255)
                                                                      cGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACCCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGga                                                                           <  2:1215624/150‑1 (MQ=255)
                                                                         cAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGc                                                                       <  1:1194797/151‑1 (MQ=255)
                                                                          aaTATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGagag                                                                        <  2:935275/149‑1 (MQ=255)
                                                                          aaTATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCg                                                                      >  1:1358303/1‑151 (MQ=255)
                                                                            tatCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGa                                                                     <  1:924017/150‑1 (MQ=255)
                                                                               ccAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGAtttt                                                                 <  1:626794/151‑1 (MQ=255)
                                                                                  gCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTtctc                                                              >  2:863783/1‑151 (MQ=255)
                                                                                    ccGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCtt                                                            <  2:808296/151‑1 (MQ=255)
                                                                                    ccGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCtt                                                            >  2:476040/1‑151 (MQ=255)
                                                                                      ggAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTcc                                                          >  1:1216249/1‑151 (MQ=255)
                                                                                      ggAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTcc                                                          >  1:905459/1‑151 (MQ=255)
                                                                                        aGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCAt                                                        <  1:586777/151‑1 (MQ=255)
                                                                                               cTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATc                                                  <  1:1173724/150‑1 (MQ=255)
                                                                                                  atcaAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATcc                                                 >  1:1150950/1‑148 (MQ=255)
                                                                                                     aaGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGaaa                                            >  1:173418/1‑150 (MQ=255)
                                                                                                     aaGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGaaa                                            <  2:94366/150‑1 (MQ=255)
                                                                                                     aaGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAAACTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGaaaa                                           <  1:113446/151‑1 (MQ=255)
                                                                                                        aaTGCATACCTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATc                                         <  1:1037013/150‑1 (MQ=255)
                                                                                                        aaTGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAAt                                          <  2:1052125/149‑1 (MQ=255)
                                                                                                        aaTGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCa                                        <  2:1358198/151‑1 (MQ=255)
                                                                                                        aaTGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCa                                        <  2:1080147/151‑1 (MQ=255)
                                                                                                           gCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCaaa                                      <  1:307637/150‑1 (MQ=255)
                                                                                                           gCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCaa                                       >  1:112926/1‑149 (MQ=255)
                                                                                                           gCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCaa                                       >  1:245206/1‑149 (MQ=255)
                                                                                                            cATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGc                                    >  2:76787/1‑151 (MQ=255)
                                                                                                              tAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCg                                   <  2:431618/150‑1 (MQ=255)
                                                                                                                aCTCCGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTc                                >  1:950824/1‑151 (MQ=255)
                                                                                                                   ccGGTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGa                              <  1:1462903/150‑1 (MQ=255)
                                                                                                                     ggTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCg                           >  2:1392685/1‑151 (MQ=255)
                                                                                                                      gTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGt                          >  2:938812/1‑151 (MQ=255)
                                                                                                                      gTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGt                          >  1:904705/1‑151 (MQ=255)
                                                                                                                      gTTCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGt                          <  1:660577/151‑1 (MQ=255)
                                                                                                                       ttCCAGCACCGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGtt                         >  2:287302/1‑151 (MQ=255)
                                                                                                                               ccGCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGcc                 <  2:1228815/151‑1 (MQ=255)
                                                                                                                                 gCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCcgc               >  1:785112/1‑151 (MQ=255)
                                                                                                                                 gCCATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCcgc               <  1:479879/151‑1 (MQ=255)
                                                                                                                                  ccATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAGAATCAAAGCGGTCGAGCGTTTCCTGGCcgcg              >  1:63442/1‑151 (MQ=255)
                                                                                                                                  ccATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCcgcg              <  2:551895/151‑1 (MQ=255)
                                                                                                                                  ccATTTGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCcgcg              >  1:1472177/1‑151 (MQ=255)
                                                                                                                                       tGCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGc         >  1:453859/1‑151 (MQ=255)
                                                                                                                                        gCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGc         <  1:1373751/150‑1 (MQ=255)
                                                                                                                                        gCAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCt        <  2:407481/151‑1 (MQ=255)
                                                                                                                                         cAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCTg       >  2:89329/1‑151 (MQ=255)
                                                                                                                                         cAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCTg       >  1:228562/1‑151 (MQ=255)
                                                                                                                                         cAAAATATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCTg       >  1:994637/1‑151 (MQ=255)
                                                                                                                                           aaaTATCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCTgcg     >  2:92642/1‑151 (MQ=255)
                                                                                                                                              tatCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCTGCGCAc  >  2:353674/1‑151 (MQ=255)
                                                                                                                                               atCGCTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCTGCGCAc  >  1:121730/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
TGCGTAACAATGATGAATGAGCGCTTGCCATCACGCAGCGAGTTCACGCCATCGGCGACCACTTTTAATGCGTCAATATCCAGCCCGGAGTCCGACTCATCAAGAATGCATAACTCCGGTTCCAGCACCGCCATTTGCAAAATATCGTTGCGCTTTTTCTCGCCGCCGGAAAAACCAACGTTTACCGAACGGGTTAATAAATCTTCCGGCATCTTCAGGAGAGCGATTTTCTCTTCCATCAAATCCTGAAAATCAAAGCGGTCGAGCGTTTCCTGGCCGCGATAGCTGCGCAC  >  NC_000913/1761905‑1762197

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A