Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F50 I2 R1
|
209 |
44.2 |
1360995 |
98.7% |
1343302 |
150.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,367,405 |
G→A |
R112H (CGC→CAC) |
arnC → |
undecaprenyl phosphate‑L‑Ara4FN transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,367,405 | 0 | G | A | 85.5%
| 144.0
/ ‑4.4
| 55 | R112H (CGC→CAC) | arnC | undecaprenyl phosphate‑L‑Ara4FN transferase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (21/26); minor base C (5/3); total (26/29) |
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGT > NC_000913/2367275‑2367550
|
atTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGAt < 2:459335/150‑1 (MQ=255)
aTTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTac < 1:415184/150‑1 (MQ=255)
tttGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTacga < 1:171637/150‑1 (MQ=255)
gCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTGACGTTACTGGGGGCTTAATTATTAAACTTTATGGCGCTTTCCAGAAACCGCCCGAAGAAAAACCCCCCCTGGTGGCGAAAGACGATGAAGGGTAAGAAGTg > 1:629018/1‑151 (MQ=255)
tAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGGTTTACTTACGCTACTGGGGCCCTAATTTTTATCCTTTTTGGCCGTGTCCCGAAAACGCCCGAAAAAAAACCCCACCCTGTGGGAAAAGACGAGGAAGGGTACGAAGTgg > 2:625467/1‑149 (MQ=255)
tAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGt < 2:272532/150‑1 (MQ=255)
aaCCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTTAATCACAATTATGGCGGCTTAATTATTTACCTTTATGCCGATCTCCCGAATACCCCCGAAGAAAACCCCCACCCCGTGGCAAAAACCGATGAAGGGTACAACGTgg > 2:353537/1‑148 (MQ=255)
cGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTTACTCACGGTTTTGGGGGCTTTATTATTAACCTTTTTGCCGAGCTCCAGAATCCGCCCGAAAAAAAACCCCACCTCGTGGCAAAAACCGATGCAGGCTATGACGTGGGAggg > 2:471118/1‑150 (MQ=255)
gCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGAc < 1:394605/151‑1 (MQ=255)
cAATTACGGGCAACATTCAGCGATTATGGCGGGTTTCAGGCCCCTTATTTGCGGCTTTATTATTAACCTTTGTTACGGCCTCCAAAAACCGCCAGCAGAAAACCCCCCCCCGGGGGGAAAAAACGAAGGAGGGTACGACGTgggggg > 1:82930/1‑143 (MQ=255)
aaTTACGGGCAACATTCAGCGATTATGGCGGGAGTTAGTCACCATTCTGGTGAACTAATTATTACTCTTGGTGTCGCATTCCCGAAGACCCCAGAAGAAAACCCCCCCCTCGTGGCAAAAACCGAAGAAAGTTAAAACGTGGTgggggc > 2:129773/1‑147 (MQ=255)
gggCAACATTCAGCGATTATGGCGGTATTCCGTCACGTTGCTGGCGTCTTAATTATTACATTTGATGCCTATCTCCAGAGTCCGCATGAAGAAATCCCCCACCTAGTGGCAAAGTCCGGTGAAGGTTCCGGAATGGTAGGGTCTGTACGct < 2:34906/151‑2 (MQ=255)
cATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAAcc < 2:502083/151‑1 (MQ=255)
cATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAAcc < 2:434150/151‑1 (MQ=255)
ttCAGCGATTATGGCGGGATTCAGTCACGCTACTTGCGACCTTATTATTTACCTTGATGCCGGTCTCCAGAAAACGCCAGAAGAAAAACCCCCCCCGGCGGGCAAAGACGGTGAAGGGTACGACGTGGGAGGGGCTGTACGCCCGaaac > 2:27714/1‑147 (MQ=255)
cAGCGATTATGGCGGGATTCAGTCACGTTATTGGCGGCTTAATTATTATCCCTTATGCCGATCTCCAGAAACCCCCAGAAAAAAACCCCCCCCCGGGGGGAAAAACCGATGAAGGGTACGACGGGGGAGGGGCTGTACGCCCGAAACGc > 1:324591/1‑149 (MQ=255)
cGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGa < 1:169027/151‑1 (MQ=255)
gggATTCAGTCCCGTTACTGGCGACTTAATTATTCCCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAATTCCCCCCCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGt < 2:109316/149‑1 (MQ=255)
ggATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTc < 1:123810/151‑1 (MQ=255)
cAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTaa > 2:302271/1‑150 (MQ=255)
cACGTTACTGGCGACTTAATTATTCCCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAAcc < 2:263990/150‑1 (MQ=255)
cGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCGGGAC‑GCTGGGTTTGTAAAAACGcat > 1:116095/1‑149 (MQ=255)
gTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCtt > 2:286949/1‑151 (MQ=255)
tACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTc < 1:358129/150‑1 (MQ=255)
aCTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCg < 1:484831/150‑1 (MQ=255)
gACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAgatg > 2:543224/1‑150 (MQ=255)
aCTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAgatgat > 2:491805/1‑151 (MQ=255)
aCTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAgatgat > 2:659013/1‑151 (MQ=255)
aCTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAgatgat < 1:373764/151‑1 (MQ=255)
aCTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAgatga < 1:462440/150‑1 (MQ=255)
tAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTGGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTa < 1:268734/150‑1 (MQ=255)
tAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTa > 1:273910/1‑150 (MQ=255)
aaTTATTCCCCTGGATGCCGATCTCCAGAAGCCGCCAGAAGAATCCCCCCCCCTGGTGGCAAAGGCCGATGAAGGTTACGACTTGGTAGGGACTTTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGAtt < 2:448399/148‑1 (MQ=255)
aaTTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTaa < 2:187423/150‑1 (MQ=255)
aaTTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAAc < 1:497016/151‑1 (MQ=255)
tattaCCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCgg > 2:247474/1‑151 (MQ=255)
taCCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCtt > 2:400861/1‑151 (MQ=255)
cccTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTAt > 1:41561/1‑151 (MQ=255)
cccTTGATGCCGACCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTAt < 2:231252/151‑1 (MQ=255)
tGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTc > 1:325671/1‑149 (MQ=255)
gATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCAAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAgc < 2:62544/151‑1 (MQ=255)
aTGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAgcg < 1:245903/151‑1 (MQ=255)
gATCTCCAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACACCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGcacc > 2:246317/1‑150 (MQ=255)
ccAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGcaccac < 1:142679/147‑1 (MQ=255)
ccAGAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTgg < 2:148179/150‑1 (MQ=255)
gAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCaa > 2:355699/1‑150 (MQ=255)
gAATCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCaa > 2:154576/1‑150 (MQ=255)
aacccGCCAAAAGAAACCCCCCCCCGGGGGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACGGGCaag < 1:417188/147‑2 (MQ=255)
tCCGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCg > 2:134724/1‑151 (MQ=255)
ccGCCAGAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCg > 2:593879/1‑150 (MQ=255)
ccGCCAAAAGAAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCg < 2:426862/150‑1 (MQ=255)
agaagaAATCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGt > 2:217207/1‑151 (MQ=255)
aaaTCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGTTGATTa < 2:354701/151‑1 (MQ=255)
aaaTCCCCCACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGAtt > 2:24861/1‑150 (MQ=255)
cccccACCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGt < 2:556989/151‑1 (MQ=255)
|
ATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATGATTAACCGGCTTATTCAGCGCACCACTGGCAAAGCGATGGGTGATTACGGT > NC_000913/2367275‑2367550
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
