Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F50 I1 R1
|
144 |
141.8 |
4677362 |
93.6% |
4378010 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,117,002 |
T→C |
T42T (ACA→ACG) |
wcaL ← |
putative glycosyl transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,117,002 | 0 | T | C | 99.2%
| 475.9
/ NA
| 128 | T42T (ACA→ACG) | wcaL | putative glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (48/79); minor base G (1/0); total (49/79) |
| Fisher's exact test for biased strand distribution p-value = 3.83e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 135 total aligned reads displayed.
GCGCCTGCCAGGTATTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGTGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCA > NC_000913/2116854‑2117148
|
cgcCTGCCAGGTATTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTtgcgtg < 2:1016424/151‑1 (MQ=255)
cgcCTGCCAGGTATTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTtgcgtg > 4:567922/1‑151 (MQ=255)
gcCTGCCAGGTATTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTgcgtgt > 2:775511/1‑151 (MQ=255)
ccAGGTATTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCt < 1:1322635/151‑1 (MQ=255)
cAGGTATTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGTCGCGTGGGTGTTTTGCGTGTCGCCtt > 1:768826/1‑151 (MQ=255)
ggTATTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCtttt < 2:298539/151‑1 (MQ=255)
aTTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGc < 3:383932/151‑1 (MQ=255)
tttttACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGc > 3:391723/1‑150 (MQ=255)
ttttACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCa < 2:585099/150‑1 (MQ=255)
ttttACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCa < 1:325735/150‑1 (MQ=255)
ttttACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCa < 2:1335487/150‑1 (MQ=255)
tttACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAgc > 4:59911/1‑151 (MQ=255)
ttACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAgc < 4:138372/150‑1 (MQ=255)
cGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGTAGCGCga < 2:1461702/151‑1 (MQ=255)
cGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGcgcg < 2:1018433/150‑1 (MQ=255)
cGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCga < 1:1320948/151‑1 (MQ=255)
aTGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCgaga < 1:143226/151‑1 (MQ=255)
gAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAAt < 2:1432087/151‑1 (MQ=255)
gAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAAt < 4:296272/151‑1 (MQ=255)
aaTGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAAtc < 3:587163/151‑1 (MQ=255)
aaTGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAAtc < 1:440420/151‑1 (MQ=255)
agCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAAtctc > 4:270364/2‑151 (MQ=255)
gCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAAtctc < 4:152939/150‑1 (MQ=255)
gCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATctct < 2:739900/151‑1 (MQ=255)
ccGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATctct > 2:1230121/1‑150 (MQ=255)
cgcgCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTAc > 1:1444055/1‑151 (MQ=255)
cgcgCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTAc > 1:605464/1‑151 (MQ=255)
cgcgCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTAc > 2:1501543/1‑151 (MQ=255)
gcgcAAGGTCTGGCTGGCTCGGGGGCGCAGGTTCGCCACTTTGCCCGTAGGTTCGTCCGGGAACCAGCGGGGTCTGGCAGCAAGGGGGGAATTCGGACATGGAGCGGGGGTGGGAGGGGGGTAGCCATTTTGCAGCGCGAGAAGCTCTAcc > 2:816872/1‑151 (MQ=255)
cgcAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCt < 4:62072/151‑1 (MQ=255)
aaGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCa > 4:414797/1‑150 (MQ=255)
ggTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAAt < 3:548592/151‑1 (MQ=255)
ggctggctCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATcc < 1:467208/148‑1 (MQ=255)
gctggctCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGGTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCata < 1:1105712/151‑1 (MQ=255)
tggctCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATc > 2:965288/1‑151 (MQ=255)
ctCGGTGGCGCCGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCACGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAAt > 4:489119/1‑151 (MQ=255)
ctCGGTGGCGCCGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAAt > 4:259324/1‑151 (MQ=255)
cGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATaa < 2:902011/151‑1 (MQ=255)
gTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTAATTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAAc < 2:294699/151‑1 (MQ=255)
ggCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAAcg < 2:587355/150‑1 (MQ=255)
aGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTa > 2:40979/1‑150 (MQ=255)
ttCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAAttt > 1:1609673/1‑151 (MQ=255)
ccACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGtt > 2:1345943/1‑151 (MQ=255)
cACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGtt > 1:1410893/1‑150 (MQ=255)
aCTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTaa < 3:151912/151‑1 (MQ=255)
aCTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTaa < 1:428662/151‑1 (MQ=255)
ttGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAgg > 4:574336/1‑150 (MQ=255)
cccGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGa < 2:1117198/151‑1 (MQ=255)
cGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAg < 1:827812/151‑1 (MQ=255)
cGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAg < 2:1659421/151‑1 (MQ=255)
cGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAg < 2:927395/151‑1 (MQ=255)
aGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGtt > 2:1226728/1‑151 (MQ=255)
ggTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGttt < 2:254481/151‑1 (MQ=255)
ggtCGTCCTGTAACCAGCGGGTTCTTGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGtt < 1:196460/147‑1 (MQ=255)
gTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTc < 2:1043992/151‑1 (MQ=255)
tCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTg > 1:1066196/1‑151 (MQ=255)
gTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACa < 1:827020/150‑1 (MQ=255)
ccAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCggg > 1:1060694/1‑151 (MQ=255)
aGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGaa < 3:468839/151‑1 (MQ=255)
aGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGa > 2:1526138/1‑150 (MQ=255)
gCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAAt < 1:209657/151‑1 (MQ=255)
gggctgtGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGGCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAAttt > 1:479066/7‑151 (MQ=255)
gggTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAAttt > 2:1120368/1‑151 (MQ=255)
ggTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTc > 2:1544676/1‑151 (MQ=255)
ggTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTc > 1:1065872/1‑151 (MQ=255)
ggTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTc > 2:1027262/1‑151 (MQ=255)
ggTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTc < 2:194685/151‑1 (MQ=255)
gTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTc > 2:689292/1‑150 (MQ=255)
gTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCa < 2:1037589/151‑1 (MQ=255)
tGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTTAGTa > 3:224605/1‑150 (MQ=255)
ggCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTa < 1:583107/149‑1 (MQ=255)
gcagcaAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAAAGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTaaaa < 3:414817/151‑1 (MQ=255)
agcaAGGTTGTCTTTCGTCCCTGCCTCGTGGGTCTTTTGCGTGTCGCCTTTTTGCTTCGCGCTCGTCTCTACCTCTCCTCCCATCTCCATCAACGCGGTAATTTGGTTAAGGGCGAATGTTTCTGCCGACAGCGGTCCTTTCCTTAAAaag < 1:816765/151‑1 (MQ=255)
agcaAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAaag < 1:55253/151‑1 (MQ=255)
caAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAaagaa < 2:1226705/151‑1 (MQ=255)
aGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAaagaa < 2:43635/149‑1 (MQ=255)
aGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGc > 2:794448/1‑151 (MQ=255)
tGTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGAc > 2:99594/1‑151 (MQ=255)
gTATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGAcc < 4:331056/151‑1 (MQ=255)
tATTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCt > 1:210522/1‑151 (MQ=255)
aTTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCtt < 1:458045/151‑1 (MQ=255)
aTTTCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCtt < 2:1056877/151‑1 (MQ=255)
tCGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCa < 3:411904/150‑1 (MQ=255)
cGTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCAt < 2:791810/150‑1 (MQ=255)
gTCCATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTGAAAAGAAGCCGACCTTCAttt > 3:584479/1‑151 (MQ=255)
ccATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTc > 1:1520406/1‑150 (MQ=255)
ccATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTc < 1:1316501/150‑1 (MQ=255)
ccATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTc > 1:1140726/1‑150 (MQ=255)
ccATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTc < 2:828394/150‑1 (MQ=255)
cATGCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCAc > 2:792352/1‑151 (MQ=255)
gCCGCGTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCt < 1:1171371/150‑1 (MQ=255)
gcgTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTcccc > 4:327443/1‑151 (MQ=255)
cgTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCg > 2:949963/1‑151 (MQ=255)
cgTGGGTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCg < 1:1579027/151‑1 (MQ=255)
gggTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGAt < 4:170009/150‑1 (MQ=255)
gggTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATg < 2:1376309/151‑1 (MQ=255)
ggTGTTTTGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATgc < 2:1636318/151‑1 (MQ=255)
gtTTTGCGTGTCTCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACACGGTAATTTGGTTAAGTACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCTATGCGCt < 1:313490/151‑1 (MQ=255)
tttGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTc > 2:1646598/1‑150 (MQ=255)
ttGCGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCa < 2:406925/150‑1 (MQ=255)
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GCGCCTGCCAGGTATTTTTACGATGAATGCCGCGCAAGGTCTGGCTGGCTCGGTGGCGCAGTTTCGCCACTTTGCCCGTAGGTTCGTCCTGTAACCAGCGGGTTCTGGCAGCAAGGTTGTATTTCGTCCATGCCGCGTGGGTGTTTTGTGTGTCGCCTTTTTGCAGCGCGAGAATCTCTACCTCAAATCCCATATCAATAAACGCGGTAATTTGGTTAAGGACGAAGGTTTCTGACGACAGCGGGAATTTCAGTAAAAAGAAGCCGACCTTCATTTCACCTCCCCGATGCGCTCA > NC_000913/2116854‑2117148
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
