Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F50 I3 R1
|
143 |
109.6 |
3434427 |
98.5% |
3382910 |
150.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,421,650 |
(C)7→8 |
coding (532/858 nt) |
ydaU → |
Rac prophage; conserved protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,421,643 | 1 | . | C | 94.6%
| 319.1
/ 8.6
| 92 | coding (525/858 nt) | ydaU | Rac prophage; conserved protein |
| Reads supporting (aligned to +/- strand): ref base . (3/2); new base C (41/46); total (44/48) |
| Fisher's exact test for biased strand distribution p-value = 6.67e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.32e-01 |
CAGAAAGGAAGCAGATGTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAAT‑‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAGGGCGCTAAC > NC_000913/1421496‑1421787
|
cAGAAAGGAAGCAGATGTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAAT‑‑cc < 2:223586/150‑1 (MQ=255)
aaaGGAAGCAGATGTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAAT‑‑ccccc‑c < 1:602124/151‑1 (MQ=255)
aaGGAAGCAGATGTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAAT‑‑ccccc‑cc < 1:806800/151‑1 (MQ=255)
aGCAGATGTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAAT‑‑CCCCC‑CCcgggg < 1:1030876/151‑1 (MQ=255)
aGCAGATGTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAAT‑‑CCCCC‑CCcgggg > 1:112021/1‑151 (MQ=255)
cAGATGTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAAT‑‑CCCCC‑CCcggggg > 2:1227169/1‑149 (MQ=255)
gTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCg < 1:1041543/150‑1 (MQ=255)
tCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAg < 1:40388/150‑1 (MQ=255)
aaacaaaacaAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGgtg > 2:1284335/1‑151 (MQ=255)
aaacaaaacaAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGgtg < 2:1396895/151‑1 (MQ=255)
aacaaaacaaGAGAGAAATTTAACAGGTGATCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGgtgt > 2:1684298/1‑151 (MQ=255)
acaaaacaaGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTc < 2:484251/151‑1 (MQ=255)
caaaacaaGATAAAAAACGAACAAGTGGTCAAACATATGTTGAATTAGGGGTTGAACATGATGTAAACACAAATTCAAAGAAAAAAGACACAGATAAAGATCTAAAAACAGACCCCCGCCGAAAA‑‑CCCCC‑CATGCGGAATCGGGGTGTc < 1:778949/149‑1 (MQ=255)
caaaacaaGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCa < 1:1110871/151‑1 (MQ=255)
caaaacaaGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATACCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGgtgt > 1:1277213/1‑149 (MQ=255)
aaaacaaGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCa > 2:377085/1‑150 (MQ=255)
aaaacaaGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCa > 2:433192/1‑150 (MQ=255)
acaaGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCaaaa > 2:1013552/1‑150 (MQ=255)
acaaGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTCTCaaaaa < 1:1340796/151‑1 (MQ=255)
agagagAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGtt > 1:1658421/1‑151 (MQ=255)
gagagaAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGttt > 1:449770/1‑151 (MQ=255)
gagaAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTg > 1:1263015/1‑150 (MQ=255)
gaAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGAcc < 2:88398/151‑1 (MQ=255)
aaaTTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGAccc > 1:1066265/1‑151 (MQ=255)
ttAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCctct < 1:102392/150‑1 (MQ=255)
aaCAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTg > 1:1557679/1‑149 (MQ=255)
aGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGatat < 2:26986/151‑1 (MQ=255)
gtgtTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTa < 1:1402710/151‑1 (MQ=255)
tCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACtt < 2:1312984/150‑1 (MQ=255)
cAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTg > 2:48635/1‑151 (MQ=255)
cAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTg < 1:730393/151‑1 (MQ=255)
aaaCAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGc > 1:1078664/1‑151 (MQ=255)
aaaCAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGc > 1:1505755/1‑151 (MQ=255)
aCAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCg < 1:1079846/151‑1 (MQ=255)
aGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGaa < 2:1107752/151‑1 (MQ=255)
gAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGAtt < 2:991587/151‑1 (MQ=255)
gAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGAtt < 1:1435369/151‑1 (MQ=255)
aaGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGAttt < 2:1435828/151‑1 (MQ=255)
aGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTc < 2:1409572/151‑1 (MQ=255)
tggtgTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATCCCCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCt > 1:1485001/1‑151 (MQ=255)
tggtgTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTg > 1:76854/1‑151 (MQ=255)
tggtgTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAAATGGATTTCt > 1:1689487/1‑150 (MQ=255)
ggtgTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGt > 2:1358403/1‑151 (MQ=255)
ttGAACATTATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGtctc < 1:1351655/149‑1 (MQ=255)
aaCATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCttt > 1:129716/1‑151 (MQ=255)
aaCATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCttt < 2:1013965/151‑1 (MQ=255)
gatgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCg < 1:433157/150‑1 (MQ=255)
gatgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCg < 1:269371/150‑1 (MQ=255)
atgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTg > 1:519272/1‑151 (MQ=255)
atgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTg < 1:1122446/151‑1 (MQ=255)
atgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTg < 2:8491/151‑1 (MQ=255)
atgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTg > 2:974844/1‑151 (MQ=255)
atgTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGAGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTg > 1:881090/1‑151 (MQ=255)
cAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTg > 2:1693567/1‑151 (MQ=255)
cAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTg < 2:1360686/151‑1 (MQ=255)
aaCACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTgg < 2:1339178/151‑1 (MQ=255)
aaCACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTgg < 1:1703526/151‑1 (MQ=255)
cacaAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGt > 1:367787/1‑151 (MQ=255)
acaAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGtt < 2:1519903/151‑1 (MQ=255)
acaAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGtt < 2:1483984/151‑1 (MQ=255)
aaaGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGa < 2:506030/151‑1 (MQ=255)
aGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAAt < 2:1196176/151‑1 (MQ=255)
aGGCAACT‑ATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAAtt > 1:56441/1‑151 (MQ=255)
cAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTc < 2:1648131/151‑1 (MQ=255)
cAAATAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTc > 1:438753/1‑151 (MQ=255)
aaCTTATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGGCTCGCTTTGGCGTGAGTGGGTTGAATTTc < 2:269588/150‑1 (MQ=255)
aaCTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCg < 2:1557774/151‑1 (MQ=255)
aCTAATAAAGATTCAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTc < 1:250098/149‑1 (MQ=255)
aCTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGc > 2:1088257/1‑151 (MQ=255)
cTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGcc > 1:944249/1‑151 (MQ=255)
taataaAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGcc > 1:1274914/1‑150 (MQ=255)
aataaAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAg < 2:1028749/151‑1 (MQ=255)
aGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCAtt > 1:583360/1‑151 (MQ=255)
gATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTg < 1:86197/151‑1 (MQ=255)
aTACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGc > 2:1540565/1‑151 (MQ=255)
tACAGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCg > 1:640698/1‑151 (MQ=255)
aGATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGaa > 1:1298644/1‑150 (MQ=255)
gATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGaaaa < 1:1358311/151‑1 (MQ=255)
gATAAAGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGaaaa < 1:1284242/151‑1 (MQ=255)
aGATCTAAAAACAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGAt < 1:1088172/151‑1 (MQ=255)
aaaaaCAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGTATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGa < 1:1349196/149‑1 (MQ=255)
aaaaaCAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGa < 1:866833/149‑1 (MQ=255)
agcAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGa < 2:286709/149‑1 (MQ=255)
aaCAGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGa < 1:800812/151‑1 (MQ=255)
aGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGc > 2:537430/1‑150 (MQ=255)
aGATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGc > 2:928509/1‑150 (MQ=255)
gATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGc > 1:277159/1‑149 (MQ=255)
gATCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAg < 2:261037/151‑1 (MQ=255)
aTCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAgg > 1:1116534/1‑151 (MQ=255)
aTCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAgg < 1:1360750/151‑1 (MQ=255)
tCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAggg > 2:1243900/1‑151 (MQ=255)
tCCCCCCCTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAggg > 1:1513665/1‑151 (MQ=255)
cccccccTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAGGgc > 1:694706/1‑151 (MQ=255)
ccTAAATC‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAGGGCGCTa > 1:1471854/1‑150 (MQ=255)
cTAAAT‑‑CCCCCTCCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTTGAATGGAGCAGGGCGCTAAc > 1:1689355/1‑151 (MQ=255)
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CAGAAAGGAAGCAGATGTTCAAACAAAACAAGAGAGAAATTTAACAGGTGTTCAAACAGATGTTGAAGTGGTGTTTGAACATGATGTCAACACAAAGGCAACTAATAAAGATACAGATAAAGATCTAAAAACAGATCCCCCCCTAAAT‑‑CCCCC‑CCGGGGGAATCGAGGTGTCAAAAAGTTTGACCCTCTGGATATTACTTTGCCGAACTGGATTTCTGTCTCGCTTTGGCGTGAGTGGGTTGAATTTCGCCAGGCATTGCGAAAACCGATTCGAACGGAGCAGGGCGCTAAC > NC_000913/1421496‑1421787
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
