Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F107 I0 R1 1271 54.2 2599312 94.9% 2466747 140.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 6,087,118 G→A 100% A214T (GCC→ACC)  oruR → ornithine utilization transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029476,087,1180GA100.0% 246.5 / NA 75A214T (GCC→ACC) oruRornithine utilization transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (36/39);  total (36/39)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CCGAGTTCTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCGCCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTCGCCAGGCATGGCTGGGACGGA  >  NC_002947/6086972‑6087262
                                                                                                                                                  |                                                                                                                                                
ccGAGTTCTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCgccacc                                                                                                                                                >  6:25892/1‑149 (MQ=255)
 cGAGTTCTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCgccacc                                                                                                                                                >  3:22060/1‑148 (MQ=255)
 cGAGTTCTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCgccacc                                                                                                                                                >  2:251399/1‑148 (MQ=255)
 cGAGTTCTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGccaccg                                                                                                                                               <  1:171706/149‑1 (MQ=255)
     ttCTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGa                                                                                                                                           <  3:169038/149‑1 (MQ=255)
     ttCTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGa                                                                                                                                           <  1:74337/149‑1 (MQ=255)
       cTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGAc                                                                                                                                          >  8:78835/1‑148 (MQ=255)
       cTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGAc                                                                                                                                          <  7:78835/148‑1 (MQ=255)
          ccTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACa                                                                                                                                         <  5:25892/146‑1 (MQ=255)
              gtgtCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGa                                                                                                                                           <  2:160146/140‑1 (MQ=255)
              gtgtCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGa                                                                                                                                           >  1:160146/1‑140 (MQ=255)
              gtgtCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAAtgcc                                                                                                                                    <  2:276598/147‑1 (MQ=255)
                 tCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAAtgcctttgc                                                                                                                               >  1:62887/1‑149 (MQ=255)
                 tCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAAtgcctttgc                                                                                                                               <  5:321904/149‑1 (MQ=255)
                       aaaGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCg                                                                                                                          >  1:76845/1‑148 (MQ=255)
                             aTCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGc                                                                                                                    <  7:107591/148‑1 (MQ=255)
                              tCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAAtgccttt                                                                                                                                 >  7:207848/1‑134 (MQ=255)
                              tCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAAtgccttt                                                                                                                                 <  8:207848/134‑1 (MQ=255)
                              tCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGa                                                                                                                  >  1:256853/1‑149 (MQ=255)
                                  tgatgaCCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGATTCGAACACCCTCGCCATGCTTACCACGCGCTCTATGACGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGACTTTGCATTCGAACGGCTATGGc                                                                                                              >  6:151705/1‑149 (MQ=255)
                                     tgaCCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTgg                                                                                                           <  4:22060/149‑1 (MQ=255)
                                      gaCCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGa                                                                                                          >  3:180579/1‑149 (MQ=255)
                                       aCCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGat                                                                                                         <  2:256853/149‑1 (MQ=255)
                                        ccTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTc                                                                                                                           >  5:60590/1‑130 (MQ=255)
                                        ccTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTc                                                                                                                           <  6:60590/130‑1 (MQ=255)
                                           gCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTc                                                                                                                           >  5:100271/1‑127 (MQ=255)
                                           gCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTc                                                                                                                           <  6:100271/127‑1 (MQ=255)
                                            cTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATAtgcc                                                                                                    >  8:75623/1‑149 (MQ=255)
                                            cTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATAtgc                                                                                                     <  5:287893/148‑1 (MQ=255)
                                             ttGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTGTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGACCGGCGAGGGCTGGATAtgcc                                                                                                    >  6:225753/1‑148 (MQ=255)
                                                           ccGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGa                                                                                     <  7:75623/149‑1 (MQ=255)
                                                                 ctTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTTGATATGCCGCTGCCGCTGGCCGACCCGAt                                                                               <  5:225753/149‑1 (MQ=255)
                                                                 ctTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGAt                                                                               >  1:252166/1‑149 (MQ=255)
                                                                     gcgcACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACt                                                                           <  2:76845/149‑1 (MQ=255)
                                                                     gcgcACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACt                                                                           >  2:26477/1‑149 (MQ=255)
                                                                            cTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAg                                                                    <  5:151705/149‑1 (MQ=255)
                                                                             ttCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGa                                                                                                                                           <  1:227330/77‑1 (MQ=255)
                                                                             ttCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGa                                                                                                                                           >  2:227330/1‑77 (MQ=255)
                                                                             ttCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGc                                                                   >  3:25285/1‑149 (MQ=255)
                                                                                gAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGCCCCGATTACTCACAAAGCCAt                                                                >  5:217276/1‑149 (MQ=255)
                                                                                  acacCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGGTGGCCGACCCGATTACTCACAAAGCCATga                                                              <  1:26477/149‑1 (MQ=255)
                                                                                      ccTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATgagcga                                                          <  5:133870/149‑1 (MQ=255)
                                                                                      ccTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATgagc                                                            >  3:321223/1‑147 (MQ=255)
                                                                                      ccTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATgagc                                                            >  6:133870/1‑147 (MQ=255)
                                                                                          gCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATgagcgagc                                                        <  2:62887/147‑1 (MQ=255)
                                                                                           cccTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCt                                                     >  5:189687/1‑149 (MQ=255)
                                                                                               ggTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTAc                                                                            >  6:307368/1‑122 (MQ=255)
                                                                                                gTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCgg                                                >  5:245459/1‑149 (MQ=255)
                                                                                                    ccACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGagcgagcg                                                       >  6:26206/1‑138 (MQ=255)
                                                                                                    ccACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGagcgagcg                                                       <  5:26206/138‑1 (MQ=255)
                                                                                                     cACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTgg                                                                                         <  5:334428/103‑1 (MQ=255)
                                                                                                     cACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTgg                                                                                         >  6:334428/1‑103 (MQ=255)
                                                                                                     cACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACaaa                                                                     >  7:237950/1‑123 (MQ=255)
                                                                                                     cACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACaaa                                                                     <  8:237950/123‑1 (MQ=255)
                                                                                                     cACGCGCTCTATGCCGGAGCCTTTCAATGACCGATCGGTTTCGCCACCGAGGAAAATGCCTTTGCGTAAGAACGGCGATGGCTGGAGATGACGCTGCCGCTGGCCGAACCGATTACTCGAAAAGCCATGAGCGAGCGCTGCCGgagcgt                                           >  5:326483/1‑147 (MQ=255)
                                                                                                        gcgcTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCAGAAAGCCATGAGCGAGCGCTGCCGGCGCCTGaa                                        <  2:252166/149‑1 (MQ=255)
                                                                                                            tctATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGc                                                                                                              <  8:234109/75‑1 (MQ=255)
                                                                                                            tctATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGc                                                                                                              >  7:234109/1‑75 (MQ=255)
                                                                                                            tctATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCtt                                    >  6:281760/1‑149 (MQ=255)
                                                                                                             ctATGCCGGAGCCTTTCAATGCCCGATCGGGTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCTGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTg                                   <  6:294399/149‑1 (MQ=255)
                                                                                                                tGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGaa                                 <  8:264064/148‑1 (MQ=255)
                                                                                                                  ccGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAAtt                               >  2:244021/1‑148 (MQ=255)
                                                                                                                   cGGAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCa                             >  7:228844/1‑149 (MQ=255)
                                                                                                                    ggAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCAc                            <  4:180579/149‑1 (MQ=255)
                                                                                                                    ggAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCAc                            <  6:189687/149‑1 (MQ=255)
                                                                                                                     gAGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCAcc                           >  3:103332/1‑149 (MQ=255)
                                                                                                                      aGCCTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGAGCCTGAACCTTGAATTCAc                            <  8:228844/147‑1 (MQ=255)
                                                                                                                         cTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTc                       <  6:245459/149‑1 (MQ=255)
                                                                                                                         cTTTCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTc                       <  1:251399/149‑1 (MQ=255)
                                                                                                                          tttCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCg                          <  4:161073/145‑1 (MQ=255)
                                                                                                                          tttCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCg                          >  3:161073/1‑145 (MQ=255)
                                                                                                                          tttCAATGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTCg                      >  4:298372/1‑149 (MQ=255)
                                                                                                                              aaTGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAAcc                                      <  6:228586/129‑1 (MQ=255)
                                                                                                                              aaTGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAAcc                                      >  5:228586/1‑129 (MQ=255)
                                                                                                                                tGCCCGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTCGCCAGGc                <  3:103322/149‑1 (MQ=255)
                                                                                                                                  cccGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGTACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAGTTCACCGGTCGCCAGGCAt              <  5:281760/149‑1 (MQ=255)
                                                                                                                                    cGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTCGCCAGGc                >  6:269825/1‑145 (MQ=255)
                                                                                                                                    cGATCGGTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTCGCCAGGc                <  5:269825/145‑1 (MQ=255)
                                                                                                                                          gTTTCGCCACCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTCGCCAGGCATGGCTGGGa      >  6:23814/1‑149 (MQ=255)
                                                                                                                                               gccaccGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTCGCCAGGCATGGCTGGGACGGa  <  4:321223/148‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                
CCGAGTTCTGCCTGGTGTCGCTGAAAGTCATCTGTGATGACCTGCTTGGCCGGCCGTTGCCGCTGCTTGGCGCACGCTTCGAACACCCTCGCCCTGGTTACCACGCGCTCTATGCCGGAGCCTTTCAATGCCCGATCGGTTTCGCCGCCGAGGACAATGCCTTTGCCTTCGAACGGCGATGGCTGGATATGCCGCTGCCGCTGGCCGACCCGATTACTCACAAAGCCATGAGCGAGCGCTGCCGGCGCCTGAACCTTGAATTCACCGGTCGCCAGGCATGGCTGGGACGGA  >  NC_002947/6086972‑6087262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A