Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 4926 296.4 4517418 96.8% 4372860 264.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 794,243 3 bp→TGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583794,2430AT100.0% 676.5 / NA 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base T (140/144);  total (140/144)
*CP042583794,2440CG99.7% 673.4 / NA 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (1/0);  new base G (138/144);  total (140/144)
Fisher's exact test for biased strand distribution p-value = 4.91e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583794,2450TA99.7% 676.8 / NA 284intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (139/143);  minor base G (0/1);  total (140/144)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 284 total aligned reads displayed.

ACTGATTTGTAAAATTATTTTGCGTCAGCTAAACCATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCGCTAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCGCTCTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGACTCTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCGCTAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAA  >  CP042583/793965‑794522
                                                                                                                                                                                                                                                                                            |||                                                                                                                                                                                                                                                                                     
     tttGTAAAATTATTTTGCGTCAGCTAAACCATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCACAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCATCTGCCCTTCGAAAATCGCAGTATTCGGTCTGTGACCGATAGCAACAAACAGACCTGCAACGCCGAATAACTCGATGCTATc                                                                                                                                                                                                                                                                           >  2:2096631/1‑288 (MQ=255)
     gttGTAAACTTGTTTGCCGTCAGCTCAACCAGCGACGTGGCGTTCAGCATCAAGGACGGCGCTGAAG‑‑‑‑‑‑CCTGGACTGGCCGAAGTGAAGGCCTGGCGAACCATGTGATCCATGCCGTGGCCGGGGGCAAAGACGCCAGGAATGCTGGGCGGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCGGTTTTCCAGGTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATACCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCg                                                                                                                                                                                                                                                                          <  2:228632/288‑1 (MQ=255)
       tGTAAAATTATTTTGCGTCAGCTAAACCATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTCCCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGTAACGTCGAGTGACTCGATGTTATCGCt                                                                                                                                                                                                                                                                        <  1:406819/289‑1 (MQ=255)
       tGTAAAATTATTTTGCGTCAGCTAAACCATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCt                                                                                                                                                                                                                                                                        <  1:502111/289‑1 (MQ=255)
           aaaTTATTTTGCGTCAGCTAAACCATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAGCCTGTACCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCg                                                                                                                                                                                                                                                                          <  2:438673/289‑1 (MQ=255)
            aaTTATTTTGCGTCAGCTAAACCATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGtttt                                                                                                                                                                                                                                                                   <  1:1565337/289‑1 (MQ=255)
                      cGTCAGCTAAACCTACGAGGAAGCGTCCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGGACCGGCAGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATcgcg                                                                                                                                                                                                                                                         <  2:1171477/289‑1 (MQ=255)
                              aaaCCATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGaa                                                                                                                                                                                                                                                 <  2:2004526/289‑1 (MQ=255)
                                 ccATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGc                                                                                                                                                                                                                                              <  1:1705331/289‑1 (MQ=255)
                                         gTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGac                                                                                                                                                                                                                                       <  1:2097273/288‑1 (MQ=255)
                                          tAGCGTTCCGCCTCGAGTGGTGCCATCCAG‑‑‑‑‑‑CCTGGACCGGGCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCGTTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGaca                                                                                                                                                                                                                                      <  2:1258399/288‑1 (MQ=255)
                                          tAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGaca                                                                                                                                                                                                                                      <  2:1512334/288‑1 (MQ=255)
                                                  cGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGa                                                                                                                                                                                                                             >  2:698646/1‑289 (MQ=255)
                                                         aGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCgg                                                                                                                                                                                                                      >  1:1123586/1‑289 (MQ=255)
                                                              tgcCATGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCAct                                                                                                                                                                                                                 <  1:1945989/289‑1 (MQ=255)
                                                                   tGCAG‑‑‑‑‑‑CCTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACttcttc                                                                                                                                                                                                            <  1:306676/289‑1 (MQ=255)
                                                                   agCAG‑‑‑‑‑‑CCTGTACCGGACGAAGTAATGGCCTGGCGATCAATGTGATCCATCACGTCGCCTGCTGCAAAGACGCCAGGAATGCTGGTCTAGTTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGCGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACttcttc                                                                                                                                                                                                            <  2:1075126/288‑1 (MQ=255)
                                                                               cTGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCg                                                                                                                                                                                                       <  2:134464/288‑1 (MQ=255)
                                                                                tgtacgggccgaaGTATTGGCCTGGCGATAAATGTGAGCCATCACGTGGCCTGAGGCAAATACGCCAGGAATGCTGGTATGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTCGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTAGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTa                                                                                                                                                                                                     <  2:1901949/277‑1 (MQ=255)
                                                                                tGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACg                                                                                                                                                                                                                                                   <  1:1008319/243‑1 (MQ=255)
                                                                                tGTACCGGCCGAAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGt                                                                                                                                                                                                      >  1:433213/1‑288 (MQ=255)
                                                                                   accggccgaaGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACgg                                                                                                                                                                                                  <  1:742195/280‑1 (MQ=255)
                                                                                      ggccgaaGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGTCGAACGCCAGTGACACCCATTTGATCGCCGGCTCCTTCTTCCATCGTCCGGGTg                                                                                                                                                                                               >  2:1483000/7‑289 (MQ=255)
                                                                                      ggccgaaGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTg                                                                                                                                                                                               <  2:1566255/283‑1 (MQ=255)
                                                                                       gccgaaGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAg                                                                                                                                                                                                         >  2:960669/6‑278 (MQ=255)
                                                                                       gccgaaGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACCCCAGTGACACCCATTTCATCGCCGGTCACCTCTTCCAGCGtcgggtggg                                                                                                                                                                                              >  2:2183378/6‑281 (MQ=255)
                                                                                        ccgaaGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGgt                                                                                                                                                                                             >  1:1806806/5‑289 (MQ=255)
                                                                                            aGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACg                                                                                                                                                                                                                                               <  1:559216/235‑1 (MQ=255)
                                                                                            aGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGaca                                                                                                                                                                                                                                      <  2:804690/244‑1 (MQ=255)
                                                                                            aGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGaca                                                                                                                                                                                                                                      >  1:804690/1‑244 (MQ=255)
                                                                                                aTGGCCTGGCGATAAATGTGAGCCATCACGTCGCCTGCGGCAAGGACGCAAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGAATGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGaa                                                                                                                                                                                     <  2:2017939/289‑1 (MQ=255)
                                                                                                        gCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGtt                                                                                                                                                                              >  2:373787/1‑288 (MQ=255)
                                                                                                         cGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTg                                                                                                                                                                             <  1:319924/288‑1 (MQ=255)
                                                                                                             aaaTGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACCCGAGGTTATCGCTGTTTTGCGTATCGCGCAGACGAACCCCAGTGACACCCCTTTGACCGCCGGCCCCTTCTTCCCGCGGACGGTTGGGGTGCAGAATGAGTTTGCCGt                                                                                                                                                                         >  2:523254/1‑288 (MQ=255)
                                                                                                                    aTCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTc                                                                                                                                                                                                                    >  1:1860324/1‑238 (MQ=255)
                                                                                                                         tCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTtctc                                                                                                                                                                     <  1:1763358/280‑1 (MQ=255)
                                                                                                                         tCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTtctc                                                                                                                                                                     >  2:1763358/1‑280 (MQ=255)
                                                                                                                            cGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCAt                                                                                                                                                         <  1:1171633/289‑1 (MQ=255)
                                                                                                                               cGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACgg                                                                                                                                                                                                  <  1:373572/245‑1 (MQ=255)
                                                                                                                               cGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCa                                                                                                                                                       <  1:698646/288‑1 (MQ=255)
                                                                                                                                 ccTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCCGCGTACGGCTGTTGTGCAGGATGATGTTGCCGTTCTCACCTTTATCCCTCCgg                                                                                                                                                     >  2:1390978/1‑288 (MQ=255)
                                                                                                                                  cTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGcc                                                                                                                                                                                                                                             <  1:1339511/199‑1 (MQ=255)
                                                                                                                                   tGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGgc                                                                                                                                                    >  1:229408/1‑287 (MQ=255)
                                                                                                                                   tGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGgc                                                                                                                                                    >  1:1919096/1‑287 (MQ=255)
                                                                                                                                         aaaGACGCCAGGACTGCTGGGCTGGGTGGCATTACCATTATTCCCCGCCTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTGTAAAATCGGAGTATTCGGGCTGTGACAGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATg                                                                                                                                            <  2:1847456/289‑1 (MQ=255)
                                                                                                                                         aaaGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATg                                                                                                                                            <  2:1690886/289‑1 (MQ=255)
                                                                                                                                         aaaGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATg                                                                                                                                            <  2:1946846/289‑1 (MQ=255)
                                                                                                                                         aaaGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATg                                                                                                                                            <  2:1954751/289‑1 (MQ=255)
                                                                                                                                                    gAATGCTGGTCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGAtttttt                                                                                                                                  >  1:2058/1‑288 (MQ=255)
                                                                                                                                                         cTGGTCTGGGTGGCATTACCATGAATACCCGACTGTGCTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCcgcgc                                                                                                                            >  1:128728/1‑289 (MQ=255)
                                                                                                                                                             tCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGtgtg                                                                                                                                                                                          >  1:181920/1‑223 (MQ=255)
                                                                                                                                                             tCTGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGa                                                                                                                         <  2:1806806/288‑1 (MQ=255)
                                                                                                                                                               tGGGTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTCCGGTTGGTGTGCAGAATGATGGTGCCGTTCTCCACTTTATCCAACAGGGGCTTAATGAGGATTTTTTCcggccggcaa                                                                                                                       >  2:670814/1‑280 (MQ=255)
                                                                                                                                                                 ggTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCg                                                                                                                    >  1:1977615/1‑289 (MQ=255)
                                                                                                                                                                 ggTGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGACCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCg                                                                                                                    >  1:747094/1‑289 (MQ=255)
                                                                                                                                                                   tGGCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTc                                                                                                                  >  1:617083/1‑289 (MQ=255)
                                                                                                                                                                    ggCATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCTGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCtt                                                                                                                                                <  2:328255/258‑1 (MQ=255)
                                                                                                                                                                      cATTACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCCGCACCGTCGAGTGACCCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAAAGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGCGTGCAGAATGATGTTGACGTTCTCAACTTTATCCAACAGGCGCGTAATGAGGATTTTTTCCCGCCGGAAACCGTc                                                                                                                  >  2:1707974/1‑286 (MQ=255)
                                                                                                                                                                        ttACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCAcggc                                                                                                             <  1:1378111/289‑1 (MQ=255)
                                                                                                                                                                        ttACCATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCAcggc                                                                                                             <  1:1550483/289‑1 (MQ=255)
                                                                                                                                                                           ccATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTg                                                                                                                                                                                               >  2:1602967/1‑204 (MQ=255)
                                                                                                                                                                           ccATGAATACCCGACTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACCCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGGTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCCCTTAAAGAGGATTTTTCTCGCTCGGCAAACGTCAcgcgggg                                                                                                          >  2:1319691/1‑284 (MQ=255)
                                                                                                                                                                                aatacccgactGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCCGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGCGTGCAGAATGATGTTCCCGTTCTCCACTTTATCCATCAGGCGCTTAAGGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGacac                                                                                                     >  2:1809013/10‑286 (MQ=255)
                                                                                                                                                                                aatacccgactGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTg                                                                                                                                                                             <  2:621777/208‑1 (MQ=255)
                                                                                                                                                                                aatacccgactGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGGTGGTGTGAAGAATGATGTTGCCGTTCTCAACTTTATCCATCAGGCGCTTAATGAGGATTTTGTCCGCGCGGAAACCGTGACGGCTGTGAATc                                                                                                     >  1:662171/10‑289 (MQ=255)
                                                                                                                                                                                     ccgactGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATTATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGCTTTTTTCCGCCCGGAAACCGTAACGGCGGTGCATCAGAt                                                                                                 >  2:1878120/5‑288 (MQ=255)
                                                                                                                                                                                     ccgactGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATg                                                                                                <  1:877967/285‑1 (MQ=255)
                                                                                                                                                                                     ccgactGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATg                                                                                                <  1:1673737/285‑1 (MQ=255)
                                                                                                                                                                                      cgactGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCg                                                                                                                                                                                                                       >  2:344252/4‑169 (MQ=255)
                                                                                                                                                                                        actGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGc                                                                                               >  1:328825/2‑287 (MQ=255)
                                                                                                                                                                                            tACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTg                                                                                                                                                                                               <  1:1201627/187‑1 (MQ=255)
                                                                                                                                                                                            tACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTg                                                                                                                                                                                               >  2:1201627/1‑187 (MQ=255)
                                                                                                                                                                                            tACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTcc                                                                                         >  1:1580710/1‑288 (MQ=255)
                                                                                                                                                                                            tACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTc                                                                                          >  1:360547/1‑288 (MQ=255)
                                                                                                                                                                                                ttGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTccgaag                                                                                     <  2:1123586/289‑6 (MQ=255)
                                                                                                                                                                                                   aTGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTccgaag                                                                                     >  2:1575443/1‑281 (MQ=255)
                                                                                                                                                                                                      tAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTccgaag                                                                                     <  2:884901/283‑6 (MQ=255)
                                                                                                                                                                                                        gCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCAt                                                                                                                                                         <  1:1953367/213‑1 (MQ=255)
                                                                                                                                                                                                        gCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCCGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCTTCACGGCGGGCAATCAGAAGCACTTCCGAAGCGGTGTTa                                                                             >  2:908961/1‑289 (MQ=255)
                                                                                                                                                                                                        gCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTa                                                                             >  1:1513504/1‑289 (MQ=255)
                                                                                                                                                                                                         ccGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTccgaag                                                                                     >  2:1521121/1‑275 (MQ=255)
                                                                                                                                                                                                          cGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTa                                                                             <  1:1605235/287‑1 (MQ=255)
                                                                                                                                                                                                                      ccagCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGGGAATCAGATGCACTTCCGAAGCGACGTTAGACAGATACAggt                                                                >  2:153750/1‑286 (MQ=255)
                                                                                                                                                                                                                      ccagCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGA‑TTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAgcgc                                                               >  2:1455670/1‑288 (MQ=255)
                                                                                                                                                                                                                              ccTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGA‑TTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAAc                                                      <  1:1455670/289‑1 (MQ=255)
                                                                                                                                                                                                                                 tCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACcg                                                    <  1:107515/289‑1 (MQ=255)
                                                                                                                                                                                                                                               aTTCGGGCTGTGACCTATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTgccg                                         <  1:2007631/286‑1 (MQ=255)
                                                                                                                                                                                                                                                        gtgACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGTTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGAc                              >  2:242896/1‑288 (MQ=255)
                                                                                                                                                                                                                                                        gtgACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGAc                                                                          <  1:1047866/244‑1 (MQ=255)
                                                                                                                                                                                                                                                        gtgACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGCTACATCGCCTCTTCAACCGCGGTAATGCCGCCGCGGATGAc                              >  2:1670053/1‑288 (MQ=255)
                                                                                                                                                                                                                                                        gtgACCGATAGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAgcgc                                                               >  1:1483221/1‑255 (MQ=255)
                                                                                                                                                                                                                                                           aCCGATAGAGACAAACAGACCGGCAAAGTCGAGTGACTCGATGTTATCGCGGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGc                           <  2:1300892/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                 aGCAACAAACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACtt                      >  1:981817/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                   caaccaacAGGCCGGCAACGTCGAGTGACTCGATGTTATCTCTGTTTTGCGTATCGCGCAAACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTg                  <  2:128728/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   caacaaACAGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTg                  >  1:904199/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                     acaaacaGACCGGCAACGGCGCTTGACTCGATTTTATCGCTGTTTTTCGGATCTCGCAGACTAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGCATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGt                <  2:2065883/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                     aacaacaGACCGGCAACGTCGAGTGGTTCTATGTTATCGCTGGTTTGCTTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGt                <  2:419152/286‑1 (MQ=255)
                                                                                                                                                                                                                                                                          caGACCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCGGGTTGCGa           >  2:858830/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                             aCCGGCAACGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTccgaag                                                                                     >  1:924036/1‑207 (MQ=255)
                                                                                                                                                                                                                                                                                   aaCGTCGAGTGACTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCCGAAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTT‑CGATAGAAGaaa  <  1:242896/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                            |||                                                                                                                                                                                                                                                                                     
ACTGATTTGTAAAATTATTTTGCGTCAGCTAAACCATCGAGGTAGCGTTCCGCATCAAGTGCTGCCATGCAG‑‑‑‑‑‑CCTGTACCGGCGCTAGTAATGGCCTGGCGATAAATGTGATCCATCACGTCGCCTGCGGCAAAGACGCCAGGAATGCTGGTCTGGGTGGCATTACCATGAATACCGCTCTGTACTTTGATGTAGCCGTTTTCCAGTTCCAGCTGCCCTTCGAAAATCGCAGTATTCGGGCTGTGACCGATAGCAACAAACAGACCGGCAACGTCGAGACTCTCGATGTTATCGCTGTTTTGCGTATCGCGCAGACGAACGCCAGTGACACCCATTTGATCGCCGGTCACTTCTTCCAGCGTACGGTTGGTGTGCAGAATGATGTTGCCGTTCTCCACTTTATCCATCAGGCGCTTAATGAGGATTTTTTCCGCGCGGAAACCGTCACGGCGGTGAATCAGATGCACTTCGCTAGCGATGTTAGACAGATACAGCGCCTCTTCAACCGCGGTATTGCCGCCGCCGATGACCGCAACTTTCTGGTTGCGATAGAAGAAA  >  CP042583/793965‑794522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A