Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F210 I1 R1	4928	385.2	6658600	97.5%	6492135	231.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP042583	1,938,750	3 bp→TCG	intergenic (–/–)	– / –	–/–

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP042583	1,938,750	0	A	T	99.2%	915.4 / NA	389	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base A (0/0); major base T (186/200); minor base C (2/1); total (188/201)
Fisher's exact test for biased strand distribution p-value = 6.12e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,938,751	0	G	C	99.2%	914.3 / NA	389	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base G (2/1); new base C (185/198); total (188/201)
Fisher's exact test for biased strand distribution p-value = 6.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*	CP042583	1,938,752	0	C	G	99.2%	901.7 / NA	389	intergenic (–/–)	–/–	–/–
Reads supporting (aligned to +/- strand): ref base C (2/1); new base G (185/198); total (188/201)
Fisher's exact test for biased strand distribution p-value = 6.13e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 389 total aligned reads displayed.

CAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCAGTCAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATAGTGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTAGCAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGACCTGCCTTACCACAACGCCGCTACG  >  CP042583/1938476‑1939030

|||

cAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTaa                                                                                                                                                                                                                                                                              <  1:893218/288‑1 (MQ=255)

cAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTaa                                                                                                                                                                                                                                                                              <  1:275413/288‑1 (MQ=255)

acgtcagggtAATTCCGCGCATATGCTGGTCGACGCCTCGCAAGCGGGGACCAT‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGAGTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAGGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTat                                                                                                                                                                                                                                                                              <  2:2655371/279‑2 (MQ=255)

    aGCGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGc                                                                                                                                                                                                                                                                         <  1:3323940/289‑1 (MQ=255)

      cGATAATTCCGCGCATATGCTGGTCGAAGCCTCACAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACCGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCtt                                                                                                                                                                                                                                                                       >  1:2302534/1‑289 (MQ=255)

                 cgcATATGCTGGTCGAAGCCTCACAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATTAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGAAAGCTGGTTTCGTAAAACCGCCTCGAAGATG‑ATTAACCgtgctcttcaggcca                                                                                                                                                                                                                                                             >  2:639178/1‑274 (MQ=255)

                              cGAAGCCTCACAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAACg                                                                                                                                                                                                                                              >  1:2534219/1‑289 (MQ=255)

                                  gcctcacAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTaa                                                                                                                                                                                                                                                                              >  2:190253/7‑254 (MQ=255)

                                   cctcacAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACAGGCTTATTCAGCGCACCC‑CGGGCAAAgggcaggg                                                                                                                                                                                                                                         >  2:2412009/6‑282 (MQ=255)

                                    ctcccAAGCGGAG‑ACAGACCATATTGTTTCTATTTTGCTTAAACGCAATTACGGGCAACATGCAGCGATTATGGCTGGATTCGTGCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATgg                                                                                                                                                                                                                                          <  2:2873499/283‑1 (MQ=255)

                                    ctcacAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATgg                                                                                                                                                                                                                                          <  1:1730428/283‑1 (MQ=255)

                                       acaaacgggagaCAG‑CCATATTGTGTTTATTTTGCTTAACCGCAATTACGGGAAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGAt                                                                                                                                                                                                                                     <  2:2908387/278‑1 (MQ=255)

                                       acAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGAt                                                                                                                                                                                                                                     <  2:1777397/288‑1 (MQ=255)

                                       acAAGCAGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGTGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGAt                                                                                                                                                                                                                                     <  2:142799/288‑1 (MQ=255)

                                         aaGCGGAGAACAG‑CCCTTTTGTTTCTATTTTGCTTCACCGAAATTCCGGGCAACATTCAGCTATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTa                                                                                                                                                                                                                                   <  2:2797984/289‑1 (MQ=255)

                                         aaGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTa                                                                                                                                                                                                                                   <  1:3174793/289‑1 (MQ=255)

                                         aaGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTa                                                                                                                                                                                                                                   <  1:3226551/289‑1 (MQ=255)

                                           gCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGGAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGGAAAGGCGTGGGGGATTACg                                                                                                                                                                                                                                 >  2:1681514/1‑289 (MQ=255)

                                                       ccATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTaa                                                                                                                                                                                                                                                                              <  2:1585543/234‑1 (MQ=255)

                                                          tatTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTgcgc                                                                                                                                                                                                                   >  1:1546038/1‑289 (MQ=255)

                                                            ttGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGAt                                                                                                                                                                                                                                     <  2:46536/269‑1 (MQ=255)

                                                            ttGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGGGATTACGGTTGTATGCTgcgcg                                                                                                                                                                                                                  >  1:491079/1‑288 (MQ=255)

                                                             tgtgTCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGcc                                                                                                                                                                                                                <  1:1447133/289‑1 (MQ=255)

                                                                gtCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTAGTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTAt                                                                                                                                                                                                             <  2:1966791/289‑1 (MQ=255)

                                                                 tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTaa                                                                                                                                                                                                                                                                              <  1:2428490/224‑1 (MQ=255)

                                                                 tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTaa                                                                                                                                                                                                                                                                              <  2:1288823/224‑1 (MQ=255)

                                                                 tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTaa                                                                                                                                                                                                                                                                              >  1:1288823/1‑224 (MQ=255)

                                                                 tCTATTTTGCTTAACCGCAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATgg                                                                                                                                                                                                                                          <  1:11562/259‑1 (MQ=255)

                                                                                  cAATTACGGGCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAAACGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgat                                                                                                                                                                                           >  1:96329/1‑289 (MQ=255)

                                                                                          ggCAACATTCAGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATgg                                                                                                                                                                                                                                          <  1:1933348/234‑1 (MQ=255)

                                                                                             aacattcagCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTAtt                                                                                                                                                                                                                                                                    <  1:2798315/198‑1 (MQ=255)

                                                                                               cattcagCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑CTTAACCGGCTTATTCAGCGCACCC‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCCTCATATTGTCTATGCGATTTTGc                                                                                                                                                                                 >  2:3186821/7‑286 (MQ=255)

                                                                                                     gCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGa                                                                                                                                                                                                                                             >  1:1693931/1‑220 (MQ=255)

                                                                                                       ggttATGGCGGGATTCAGTCACGTTCCTGGCGACTTAATTATTCCCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCAt                                                                                                                                                                         <  2:2302534/284‑1 (MQ=255)

                                                                                                                 ggATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa                                                                                                                                                                                >  2:574718/1‑269 (MQ=255)

                                                                                                                       cgTCACGTTACTGGCACATTAATTATTACCCTACAGCCCGATCTCCACAACCCGCCAGAGGAAATCCCCCGCCTGGTGTCAAAAGCCGAGGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATcc                                                                                                                                                      <  2:1797591/288‑1 (MQ=255)

                                                                                                                            cGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatg                                                                                                                                                                                          <  1:1092752/248‑1 (MQ=255)

                                                                                                                              ttACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGaa                                                                                                                                                                      <  1:2106112/266‑1 (MQ=255)

                                                                                                                              ttACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGaa                                                                                                                                                                      >  2:2106112/1‑266 (MQ=255)

                                                                                                                                   ggCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATTGGTGATTACGGTTGTATGCTGCCGCCCTATCGCCGTCATCTTGGTGATGCGATGTTGCACTGCCATGAACTGCGCCCCTTTTTGCCGATTCTGGCGa                                                                                                                                          >  2:1723814/1‑289 (MQ=255)

                                                                                                                                       aCTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGt                                                                                                                                                                                    <  1:1631362/243‑1 (MQ=255)

                                                                                                                                       aCTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAata                                                                                                                                       >  2:252254/1‑288 (MQ=255)

                                                                                                                                         ttAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa                                                                                                                                                                                >  2:3277698/1‑245 (MQ=255)

                                                                                                                                                ttccccTCGATGCCGTTCTCCAGAATCCGCCAGAAGAACTCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTGGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTcgcccg                                                                                                                             <  2:1040187/286‑1 (MQ=255)

                                                                                                                                                  aCCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTa                                                                                                                                                                                                                                   >  1:1960330/1‑185 (MQ=255)

                                                                                                                                                   cccTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGACGGGTGATAACGGTTGTATGTTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGACATGAACGCAGCACATTTATCCCGATTCTGGCGAATCTCTTCGCccgccg                                                                                                                          >  1:2876260/1‑289 (MQ=255)

                                                                                                                                                     cTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGt                                                                                                                         >  2:2846477/1‑288 (MQ=255)

                                                                                                                                                       tGATGCCGATCCCCAAAATCCGCCAGAAGAAAGCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGAAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGcc                                                                                                                      <  2:2968124/289‑1 (MQ=255)

                                                                                                                                                        gATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGc                                                                                                                                                                                                                                                                         <  1:794554/142‑1 (MQ=255)

                                                                                                                                                        gATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGcc                                                                                                                      >  2:112178/1‑288 (MQ=255)

                                                                                                                                                        gATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCa                                                                                                                     >  1:3062994/1‑289 (MQ=255)

                                                                                                                                                        gATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGAGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTTCCATGACCGCAGCACCTGTATCACGATTGTGGCGAATATCTCAGACCGCCGTGcc                                                                                                                      >  2:2268374/1‑288 (MQ=255)

                                                                                                                                                        gATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCCCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCCCCTTTATCCCGATTCTGGCGAATATCTTCGTCCGCCGTGCCa                                                                                                                     >  1:601177/1‑289 (MQ=255)

                                                                                                                                                           gCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTg                                                                                                                  >  1:2279991/1‑289 (MQ=255)

                                                                                                                                                             cgcatcccAGAACCCGCCGGAAGAAATCCCCCGCCTAGGGGAAAAAGCCGACGAGGGTATGGACGTGGTCGGGACGGTACGCCAGAACCGCCCGGACAGCTGGTTTCGTAAAACCGCTTCGAAGAGG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCTGTGGGTGATTACGGTTGTGTGCTGCGCGCCTATCGCCTTCATATTGTCGATGCGATGTTGCACTGCCATGACCGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGa                                                                                                                 <  2:449124/282‑1 (MQ=255)

                                                                                                                                                              gATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTcgatgcga                                                                                                                                                                                       >  2:3024995/1‑217 (MQ=255)

                                                                                                                                                                    cAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAg                                                                                                         >  1:2686769/1‑289 (MQ=255)

                                                                                                                                                                            gCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTaa                                                                                                                                                                                                                                                                              <  2:312500/117‑1 (MQ=255)

                                                                                                                                                                            gCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTAcatcat                                                                                                 >  1:637512/1‑289 (MQ=255)

                                                                                                                                                                            gCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTAcatcat                                                                                                 >  1:2928284/1‑289 (MQ=255)

                                                                                                                                                                              cAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATg                                                                                                >  1:654277/1‑288 (MQ=255)

                                                                                                                                                                                      aTCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCata                                                                                                                                                                                                   <  1:303469/181‑1 (MQ=255)

                                                                                                                                                                                        cccccGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAg                                                                                     >  2:3223217/1‑289 (MQ=255)

                                                                                                                                                                                               cTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTg                                                                              <  1:451252/289‑1 (MQ=255)

                                                                                                                                                                                                  gtggCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAgcg                                                                                                                                                                                                                                                               <  2:2226661/110‑1 (MQ=255)

                                                                                                                                                                                                  gtggCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcag                                                                                                                                                                 <  1:394791/203‑1 (MQ=255)

                                                                                                                                                                                                  gtggCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcag                                                                                                                                                                 >  2:394791/1‑203 (MQ=255)

                                                                                                                                                                                                        aacgCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAAt                                                                     <  2:1231701/286‑1 (MQ=255)

                                                                                                                                                                                                                              tGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTa                                                                                                                                                                                                                                   <  2:3056356/109‑1 (MQ=255)

                                                                                                                                                                                                                               ggTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAAt                                              >  1:1221978/1‑289 (MQ=255)

                                                                                                                                                                                                                                gTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGa                                                                                                                 <  1:2606681/221‑1 (MQ=255)

                                                                                                                                                                                                                                gTAGGGACTGTACGACAGAACCGCCAGGACAGCTGGGTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCAAGAACGAAGCCCCGTTATCCCGATTCTGGCAAATATCTTCGCCCGCCGTACCATTGAAATTCCAGTACATCATGCCGACCCTGAGTTTGGTGAATCAAAATACCGTTTTATGCGCCTGATTAAtt                                             >  2:618230/1‑289 (MQ=255)

                                                                                                                                                                                                                                 tAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAAtt                                             <  1:1340385/288‑1 (MQ=255)

                                                                                                                                                                                                                                 tAGGGACGGTACGCCAGAACCGCAAGGCCAGCGGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAAtt                                             <  2:1508964/288‑1 (MQ=255)

                                                                                                                                                                                                                                        tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGa                                                                                                                                                                                                                                             <  1:2127704/89‑1 (MQ=255)

                                                                                                                                                                                                                                        tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGa                                                                                                                                                                                                                                             >  2:2127704/1‑89 (MQ=255)

                                                                                                                                                                                                                                        tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCtt                                                                                                                                                           >  2:853300/1‑171 (MQ=255)

                                                                                                                                                                                                                                        tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAAt                                              >  1:3268421/1‑280 (MQ=255)

                                                                                                                                                                                                                                        tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGt                                       >  2:1313263/1‑287 (MQ=255)

                                                                                                                                                                                                                                        tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGt                                       >  2:1351653/1‑287 (MQ=255)

                                                                                                                                                                                                                                        tGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTAc                                     >  2:2702371/1‑289 (MQ=255)

                                                                                                                                                                                                                                         gTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACg                                    >  1:1020136/1‑289 (MQ=255)

                                                                                                                                                                                                                                          tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCa                                                                                                                                                                                >  2:674381/1‑148 (MQ=255)

                                                                                                                                                                                                                                          tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACgcag                                                                                                                                                                 >  1:2251658/1‑163 (MQ=255)

                                                                                                                                                                                                                                          tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGaaa                                                                                                               >  1:837249/1‑213 (MQ=255)

                                                                                                                                                                                                                                          tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTg                                                                              >  2:2311995/1‑246 (MQ=255)

                                                                                                                                                                                                                                          tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAAttt                                            >  2:1211123/1‑280 (MQ=255)

                                                                                                                                                                                                                                          tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACg                                    >  1:1501257/1‑288 (MQ=255)

                                                                                                                                                                                                                                          tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACg                                    >  1:1114511/1‑288 (MQ=255)

                                                                                                                                                                                                                                          tACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACg                                    >  2:234532/1‑288 (MQ=255)

                                                                                                                                                                                                                                           aCGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGa                                   >  1:2376370/1‑288 (MQ=255)

                                                                                                                                                                                                                                                  aaCCGCCAGGACAGCTGGTTTCGTAAACCCG‑TTTCGAGATGAATTACCCGGCTTATTCAGCG‑ACCACCTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGa                           <  2:1934399/289‑1 (MQ=255)

                                                                                                                                                                                                                                                    ccGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAAt                                                                     >  1:1563168/1‑245 (MQ=255)

                                                                                                                                                                                                                                                    ccGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGAcc                         <  2:1106671/289‑1 (MQ=255)

                                                                                                                                                                                                                                                    ccGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGAcc                         <  2:1548606/289‑1 (MQ=255)

                                                                                                                                                                                                                                                    ccGCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGAcc                         <  1:2994404/289‑1 (MQ=255)

                                                                                                                                                                                                                                                      gCCAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGACCt                        >  2:769688/1‑288 (MQ=255)

                                                                                                                                                                                                                                                       ccAGGACAGCTGGTTTCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTAtgctgc                                                                                                                                                                                                                     >  1:2842304/1‑98 (MQ=255)

                                                                                                                                                                                                                                                                     ttCGTAAAACCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGACCTGCCTTACCACAAcgc         >  2:944227/1‑288 (MQ=255)

                                                                                                                                                                                                                                                                           aaaCCGCTTCGAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGACCTGCCTTACCACAACGCCGCTACg  <  1:1860000/289‑1 (MQ=255)

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CAGTAGCGATAATTCCGCGCATATGCTGGTCGAAGCCAGTCAAGCGGAGAACAG‑CCATATTGTGTCTATTTTGCTTAACCGCAATTACGGGCAACATAGTGCGATTATGGCGGGATTCAGTCACGTTACTGGCGACTTAATTATTACCCTTGATGCCGATCTCCAGAATCCGCCAGAAGAAATCCCCCGCCTGGTGGCAAAAGCCGATGAAGGTTACGACGTGGTAGGGACTGTACGCCAGAACCGCCAGGACAGCTGGTTTCGTAAAACCGCTAGCAAGATG‑ATTAACCGGCTTATTCAGCGCACCA‑CTGGCAAAGCGATGGGTGATTACGGTTGTATGCTGCGCGCCTATCGCCGTCATATTGTCGATGCGATGTTGCACTGCCATGAACGCAGCACCTTTATCCCGATTCTGGCGAATATCTTCGCCCGCCGTGCCATTGAAATTCCAGTACATCATGCCGAGCGTGAGTTTGGTGAATCCAAATACAGTTTTATGCGCCTGATTAATTTGATGTACGACCTGGTGACCTGCCTTACCACAACGCCGCTACG  >  CP042583/1938476‑1939030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 10 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A