Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F210 I1 R1 4929 268.4 3907572 96.3% 3762991 273.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 1,781,546 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0425831,781,5460AT98.8% 590.5 / NA 257intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base T (125/126);  minor base C (2/1);  total (130/127)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,781,5470GC99.2% 585.9 / NA 257intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (2/0);  new base C (128/125);  total (130/127)
Fisher's exact test for biased strand distribution p-value = 4.98e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP0425831,781,5480CG98.8% 585.3 / NA 257intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/0);  major base G (127/125);  minor base T (1/2);  total (130/127)
Fisher's exact test for biased strand distribution p-value = 6.22e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 257 total aligned reads displayed.

GGTTGTTATCTCACACCCTACAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTAGTGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑AGCCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTGGCAATACTGGAGA  >  CP042583/1781267‑1781825
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                     
ggTTGTTATCTCACACCCTACAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTa                                                                                                                                                                                                                                                                                >  1:669766/1‑289 (MQ=255)
     ttATCTCACACCCTACAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCTTTACGCACTGACTGGCGGGATGCCATCGCAGGC‑GCGCGGATTAaagaa                                                                                                                                                                                                                                                                           >  2:1390909/1‑289 (MQ=255)
             cacCCTACAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTATACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGaa                                                                                                                                                                                                                                                                   <  1:1749762/289‑1 (MQ=255)
               cccTACAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAAc                                                                                                                                                                                                                                                                  >  1:1400519/1‑288 (MQ=255)
               cccTACAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGCGGGGCTTGCAGAAGGCCGGTGAAC‑CACTGCTAAAAACTAACCTTACCCGTTTGCCCCAGCACAAATTCCCCGAGTCGACCGCGGACATCGCTGCCGCCCATCTGCATACGATGGCGCTGGCACAGTTGCGCGCTCATACACCACAGTAACGCACTGACTGTCT‑CATGCCCTCGCAGGC‑GCGCTGATTTACGAAGCGCtaacagg                                                                                                                                                                                                                                                                >  2:372325/1‑283 (MQ=255)
                  tACAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAAcgcg                                                                                                                                                                                                                                                               >  1:1329960/1‑288 (MQ=255)
                   aCAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGcc                                                                                                                                                                                                                                                             >  1:1501258/1‑289 (MQ=255)
                    cAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCGCTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCg                                                                                                                                                                                                                                                            <  2:111517/289‑1 (MQ=255)
                          aaaGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCg                                                                                                                                                                                                                                                      >  1:716829/1‑289 (MQ=255)
                          aaaGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCg                                                                                                                                                                                                                                                      >  1:1224073/1‑289 (MQ=255)
                            aGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTTCGCGGTCATACACTACCGTTACACACTGACTGGCTGGATGCCATAGCACGC‑TCGACGATTAAATAAGCCCTAAACGCGCCGTTGTCGTg                                                                                                                                                                                                                                                    >  2:539306/1‑289 (MQ=255)
                            aGCGCCTTGATGTGCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTg                                                                                                                                                                                                                                                    >  1:1600938/1‑289 (MQ=255)
                                      tgtgCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATcg                                                                                                                                                                                                                                           <  2:669766/288‑1 (MQ=255)
                                         gCTGGCAGGATACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCgcggc                                                                                                                                                                                                                                       <  1:960498/289‑1 (MQ=255)
                                               cggacaccgttcaggAATGCCTGACCCGGTATGGCAAATCTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAA‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCTGTCATACACTACCCTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCTCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  1:1171522/276‑1 (MQ=255)
                                                ggatagcttgcaggAATTCCTGCCCCGGTATGGCAAACCTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑ACCTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  2:344854/276‑1 (MQ=255)
                                                ggATACCTTTCAGGAATGGCTGCCCCGGTATGGCAAAACGGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATAGGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  2:1743749/288‑1 (MQ=255)
                                                ggATACCTTTCAGGAATGGCTGACACGGTATGGCAAAAATGGGGCTGGCGGTGGGACTTGACGAAGGCCGGTGAAC‑AACTGCTAAAAACGATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATAGGGCTGCCGCTCATCTGCATGCGAGGGAGCTGGCCAAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCAGAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGGTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  2:1925303/288‑1 (MQ=255)
                                                  aaacctttcgtgAATGCCTGCCCGGGGATAGGAAAACTGGTGCGCGAAGTGGCGAAGGGAGAAGCCGGGAGAAA‑AACTGAGACTACCAGTCCTTGACCAGTTGGGGCAACACAAGTTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATTTGCATGCGATGGCGCTGGAACAGTAGCGCAGTCATACACTACCGTTACGCACTGACTGGCTGAGTGGCATAGCAGGC‑TCGCGGCTTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  2:453528/275‑1 (MQ=255)
                                                  aTACCTTTCAGGCATGCCTGTCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  1:1475199/286‑1 (MQ=255)
                                                  aTACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  1:1038220/286‑1 (MQ=255)
                                                  aTACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  1:1721448/286‑1 (MQ=255)
                                                  aTACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  1:617212/286‑1 (MQ=255)
                                                  aTACCTTTCAGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATAGCGGCGTTATTCa                                                                                                                                                                                                                               >  1:344854/1‑288 (MQ=255)
                                                    acctttcaggAATGCCTGCCCCGGAATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGCGAAC‑AACTGCTAAAAACTATCCTTCCCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATcc                                                                                                                                                                                                                            <  1:734902/281‑1 (MQ=255)
                                                         tcaggAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGAt                                                                                                                                                                                                                        >  1:544081/4‑288 (MQ=255)
                                                                tgcctgccCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGTAGCTATCGCGGCCTTAGTCATCCCGATAccgctc                                                                                                                                                                                                                 >  2:1689160/1‑288 (MQ=255)
                                                                tgcctgccCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCCTTGCCGTGGAGCGATCGCGGCGTTATTCCTCCCTATAaccatcc                                                                                                                                                                                                                >  2:362362/1‑289 (MQ=255)
                                                                  cctgccCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCCCAGTTGCGCGGTCATACACTACCGCTACGCACTGACTGGCTGGATGCCATAGCAGGCTCGCCT‑ATTAAAGAAGCCCTTACCGCCACGTTGCCGTCGAGCTATCCCGGCGCTATTCATCCCGATCccgacccca                                                                                                                                                                                                              >  2:1247462/1‑287 (MQ=255)
                                                                  cctgccCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATAccgatccga                                                                                                                                                                                                              >  1:1049161/1‑289 (MQ=255)
                                                                         cGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCt                                                                                                                                                                                                       <  1:820961/289‑1 (MQ=255)
                                                                         cGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCt                                                                                                                                                                                                       <  1:277502/289‑1 (MQ=255)
                                                                           gTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTa                                                                                                                                                                                                      >  2:857510/1‑288 (MQ=255)
                                                                            tagggCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGCCCGGGGAAC‑ACCTGCTAAAAACTATCCGTCCCGGTGTGCGCCAGCACAAATGGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTaa                                                                                                                                                                                                     <  2:685146/285‑1 (MQ=255)
                                                                            tATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTaa                                                                                                                                                                                                     <  1:857510/288‑1 (MQ=255)
                                                                             aaggaaaagggggTGCTGACGGTGGGTCTTGC‑GAAAGGCGGTGGACAAACTGCGAAACACTATCCTGACCCGTTTGCGCCAGCACAAATATCCCGATTCTACAGCGGATATGGCTGCCGCTAATCTGCATGCGATGGCGCTGGGACAGTTGCGCGGGCATACACTGCAGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACg                                                                                                                                                                                                   <  2:1325217/278‑1 (MQ=255)
                                                                                  aaacCTGGTGCTGGCAGGGGGGCTTGAAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTGGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGTTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGAt                                                                                                                                                                                              <  2:1234571/289‑1 (MQ=255)
                                                                                  aaaaCTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGAt                                                                                                                                                                                              <  1:1726121/289‑1 (MQ=255)
                                                                                       tGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGaca                                                                                                                                                                                         <  1:18012/289‑1 (MQ=255)
                                                                                                         ttGCGGCAGGCCGGTGAAC‑AGCTTCCAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTCCTACCGCGGATATGGCTGCCGCTCATCTGGATGAGATGGCGCTGGCACAGTTGGGAGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGa                                                                                                                                                                        <  2:720421/288‑1 (MQ=255)
                                                                                                             gacgtgCCGGTGAAC‑AATCGCTAAAAACTATCCTTCCCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGAGGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCg                                                                                                                                                                    <  2:888701/283‑1 (MQ=255)
                                                                                                                   ccGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTaaa                                                                                                                                                               <  1:1762154/287‑1 (MQ=255)
                                                                                                                      gTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTg                                                                                                                                                           >  2:556977/1‑288 (MQ=255)
                                                                                                                              acTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCt                                                                                                                                                   >  1:1673756/1‑289 (MQ=255)
                                                                                                                               cTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCt                                                                                                                                                   >  2:122477/1‑288 (MQ=255)
                                                                                                                                          tATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAAcc                                                                                                                                        >  2:488301/1‑288 (MQ=255)
                                                                                                                                            tCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTTCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  1:1291957/197‑1 (MQ=255)
                                                                                                                                            tCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 >  2:1291957/1‑197 (MQ=255)
                                                                                                                                                 aCCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTACACTTGCCCCTTCTACGCCACAACCGCCTCTg                                                                                                                                 >  2:1778854/1‑288 (MQ=255)
                                                                                                                                                        tGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCCCCTCTGCCAAAAGa                                                                                                                         >  2:1379344/1‑289 (MQ=255)
                                                                                                                                                                     aTTGCCCTCTTCTACCGCGGTTATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGaa                                                                                                            <  1:1646846/289‑1 (MQ=255)
                                                                                                                                                                             ctccccccGCGGATTTGCCTGCCGCTCTACTGAAGGCGGTGGGTCTGGCACAGTGGCGCGGTAATACCGTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACg                                                                                                    <  2:800524/283‑1 (MQ=255)
                                                                                                                                                                             cTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACg                                                                                                    >  2:388069/1‑289 (MQ=255)
                                                                                                                                                                                    cgcgGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCa                                                                                             >  1:636543/1‑289 (MQ=255)
                                                                                                                                                                                                   cGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCcggcg                                                                              <  1:1379344/289‑1 (MQ=255)
                                                                                                                                                                                                     cTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTTCGACCTGGAACGTACCGCCATCCCCCCTCccgcgg                                                                             >  2:1827034/1‑288 (MQ=255)
                                                                                                                                                                                                     cTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACg                                                                                                    >  1:384633/1‑265 (MQ=255)
                                                                                                                                                                                                       cATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTTCCGTGACGCACTGACTGGATGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATCGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGc                                                                          <  1:1091324/289‑1 (MQ=255)
                                                                                                                                                                                                       cATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 >  1:883929/1‑138 (MQ=255)
                                                                                                                                                                                                                  taTGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGTCTGGATGCCATTGCAGGC‑TCGCTGATTAAAGAAGCCCTGATCGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAAt                                                               <  1:201723/288‑1 (MQ=255)
                                                                                                                                                                                                                  gATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  1:1023407/127‑1 (MQ=255)
                                                                                                                                                                                                                  gATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 >  2:1023407/1‑127 (MQ=255)
                                                                                                                                                                                                                  gATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAAt                                                               <  1:1242305/289‑1 (MQ=255)
                                                                                                                                                                                                                  gATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGACGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCCCAACCGCCTCCCCCAAAAGATGTCACCTGCGAACCGGAACCTACCGCAACCCCCCTTCCGGCGGCCCTTACCTTaaa                                                                >  2:1454049/1‑288 (MQ=255)
                                                                                                                                                                                                                       cgcgGGCACAGTTGGAGGGTACTACACACCCGTTACGCCTGGGCTGGCTGGATGCCATAGAAGGC‑TCGCTGATTAAAGAAGCCCTGGACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCt                                                           <  2:1600938/288‑1 (MQ=255)
                                                                                                                                                                                                                       cgcTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCtt                                                          >  1:1834040/1‑289 (MQ=255)
                                                                                                                                                                                                                       cgcTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCt                                                           <  1:488301/288‑1 (MQ=255)
                                                                                                                                                                                                                          tGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCgg                                                                                                                                                                   >  1:126321/1‑181 (MQ=255)
                                                                                                                                                                                                                            gCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTa                                                                                                  >  1:1228846/1‑244 (MQ=255)
                                                                                                                                                                                                                                  ttGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAATGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATg                                               >  1:113716/1‑289 (MQ=255)
                                                                                                                                                                                                                                          tCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGc                                                                                                                                               >  1:526652/1‑185 (MQ=255)
                                                                                                                                                                                                                                                 cTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCGGGTTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTc                                <  2:331436/289‑1 (MQ=255)
                                                                                                                                                                                                                                                 cTACCGTTACGCACTGACTGGCTGGATGACATAGCAGGC‑TCGCTGATTAAAGAGGCCCTGAACGCGCCGTGGCCGTGGAGCTATCGCGGCGTTATTCATCCGGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGAGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTc                                <  2:1576182/289‑1 (MQ=255)
                                                                                                                                                                                                                                                  tACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCa                               >  1:453930/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATcc                                                                                                                                                                                                                            <  2:189383/98‑1 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATAc                                                                                                                                                                                                                      >  1:262403/1‑104 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAACGATGTCACCTGCGAACTGGAACGTACCGCAATCCCCCTTCCGGCGGAGCTTACCGTAAATCGCTTTACCCCCGATGCGCTGGCGCAAAGTCAgg                             >  2:318131/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCatg                             >  1:996773/1‑287 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAgg                             >  1:1428542/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAgg                             >  1:1060201/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAgg                             >  1:1126859/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAACCGCTTTACCCCCCATGGGCTGGCCCAAAGCCAgg                             >  2:598806/1‑289 (MQ=255)
                                                                                                                                                                                                                                                    ccGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACAGCAATCTCCCCTACGGCGGAGCTTACCATAACTCGCTTTACCCCCGATGCGCTgggcccaaggccgg                             >  2:1047535/1‑277 (MQ=255)
                                                                                                                                                                                                                                                         aCGCACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGtt                         >  2:298202/1‑288 (MQ=255)
                                                                                                                                                                                                                                                            cACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGCTCCGCTTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACGCGCCCCTTCTACGCCACACCCGCCTCCGCCAAAAGATGTCACCTGCGCACTTGAACGTACCGCACTCTCCCTTACGGCGGAGCTTCCCTTCAATCGCCTTACCCCCCATGGCCCGGCCACACGTCCGGTGCTACa                      >  2:24300/1‑288 (MQ=255)
                                                                                                                                                                                                                                                            cACTGACTGGCTGGATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACa                      <  1:753939/288‑1 (MQ=255)
                                                                                                                                                                                                                                                             actgactgCTGGGATTCCATAGCAGGC‑CAGCTGATTAAAGATGCCCTGAACGCGGCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACAt                     <  2:1203982/288‑1 (MQ=255)
                                                                                                                                                                                                                                                              cggactgGCGGGATGCCATAGCAGCC‑TCGCTGAGTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCg                   <  2:1060201/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                   tggctggAGGACAACGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTgg              <  2:1278748/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   tggctgcATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTgg              <  1:362362/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                   tggcgggAGTCCATAGCATGC‑TCGCGGATTAAAGGAGCCCTGAGCGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCATCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCGCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTgg              <  2:1184171/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                    ggctggATGCCATAGCCGGC‑TAGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGAAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTgg              <  1:1005175/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                    ggctggATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTgg              <  2:145751/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                     gctggATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTGGCa            >  1:395592/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                       tggATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 >  2:515548/1‑74 (MQ=255)
                                                                                                                                                                                                                                                                       tggATGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTAtt                                                                                                                                                                                                                                 <  1:515548/74‑1 (MQ=255)
                                                                                                                                                                                                                                                                           tGCCATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTATATCGCTTTACCCCCGATGGGCTGGCGCCAAGTCAGGGGGTAAACCGGCCGGGAATAccg      >  2:521809/1‑287 (MQ=255)
                                                                                                                                                                                                                                                                              cATGGCAGGC‑TCGCTGATTAAAGAAGCCCTGACCGGGCCGTTGCCGTGGGGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTGGCAATACTGgag   <  2:1725593/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                              cATAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTGGCAATACTGgag   <  1:710631/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                                tAGCAGGC‑TCGCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTGGCAATACTGgaga  >  2:742091/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                                         |||                                                                                                                                                                                                                                                                                     
GGTTGTTATCTCACACCCTACAGTGAAAAGCGCCTTGATGTGCTGGCAGGATACCTTAGTGGAATGCCTGCCCCGGTATGGCAAAACTGGTGCTGGCAGTGGGGCTTGCAGAAGGCCGGTGAAC‑AACTGCTAAAAACTATCCTTACCCGTTTGCGCCAGCACAAATTGCCCGCTTCTACCGCGGATATGGCTGCCGCTCATCTGCATGCGATGGCGCTGGCACAGTTGCGCGGTCATACACTACCGTTACGCACTGACTGGCTGGATGCCATAGCAGGC‑AGCCTGATTAAAGAAGCCCTGAACGCGCCGTTGCCGTGGAGCTATCGCGGCGTTATTCATCCCGATACCGATCCGATTCTGCTAACGTTGATAGACACATTAGCGGGTGACGGATTCGGTAAACTTGCCCCTTCTACGCCACAACCGCCTCTGCCAAAAGATGTCACCTGCGAACTGGAACGTACCGCAATCTCCCTTCCGGCGGAGCTTACCTTAAATCGCTTTACCCCCGATGGGCTGGCGCAAAGTCAGGTGTTACATCGGCTGGCAATACTGGAGA  >  CP042583/1781267‑1781825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A