Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 646,264 3 bp→TCG intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583646,2640AT99.5% 1020.1 / NA 428intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/1);  major base T (212/213);  minor base G (1/1);  total (213/215)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583646,2650GC99.1% 995.9 / ‑2.6 428intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (1/0);  major base C (210/213);  minor base T (2/2);  total (213/215)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01
*CP042583646,2660CG100.0% 1018.4 / NA 428intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (213/215);  total (213/215)

Only 100 of 428 total aligned reads displayed.

ACGCTTTGGGGGAAAGATGGATTTTTTTAGTGTGCAGAATATCCTGGTACATATACCAATAGGGGCAGGCGGTTATGATCTCAGTTGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGAGCCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTAGCATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATAGTTGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTAT  >  CP042583/645984‑646542
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                    
aCGCTTTGGGGGAAAGATGGATTTTTTTAGTGTGCAGAATATCCTGGTACATATACCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACaa                                                                                                                                                                                                                                                                                >  1:2426580/1‑289 (MQ=255)
                 tGGATTTTTTTAGTGTGCAGAATATCCTGGTACATATACCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTACCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAgg                                                                                                                                                                                                                                                                <  2:389968/288‑1 (MQ=255)
                                          ccTGGTACATATACCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCa                                                                                                                                                                                                                                      <  2:912797/289‑1 (MQ=255)
                                          ccTGGTACATATACCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCa                                                                                                                                                                                                                                      >  1:292731/1‑289 (MQ=255)
                                          ccTGGTACATATACCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATCGGCCTTGCCAGGCTTGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTCTGCGTGGTGGTGAAAACCCAGTCCGTACGAGGCGTGCTTGAAATTTTGCGGGTTGTCa                                                                                                                                                                                                                                      >  2:2011307/1‑289 (MQ=255)
                                              gTACATATACCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAAGCACGATAGCCGGGTTGCTGTGTATTGGCCTTGTCATTCTGGAGAATATCGGCAACTACTTCTTTGACCTGACCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTTTTTGCCAGTC‑TGCTATTACAGGTTTTTTTCTTTTCCGCGAATCTTTACGTTTGGTATCCGTGGTTGCTACAACCCCGTCAGAAACAGGCGTGATTTAAAATTTGCTGGTTgaatttg                                                                                                                                                                                                                                   >  2:1856349/1‑282 (MQ=255)
                                               tACATATACCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTTCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGcc                                                                                                                                                                                                                                 >  2:2487838/1‑289 (MQ=255)
                                                   tataCCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGt                                                                                                                                                                                                                                                                          >  2:2283674/1‑244 (MQ=255)
                                                    ataCCAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAgg                                                                                                                                                                                                                            >  2:791591/1‑289 (MQ=255)
                                                        cAATAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTc                                                                                                                                                                                                                                                 <  1:1847545/264‑1 (MQ=255)
                                                         aaTAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACta                                                                                                                                                                                                                       >  1:2280542/1‑288 (MQ=255)
                                                           tAGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTTGCTGGTTGCCATTGCCGAAGGCCCtta                                                                                                                                                                                                                      >  2:233605/1‑286 (MQ=255)
                                                            aGGGGCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGTCAccac                                                                                                                                                                                                                      >  2:2506692/1‑284 (MQ=255)
                                                                gCAGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGt                                                                                                                                                                                                                >  2:1060537/1‑289 (MQ=255)
                                                                  aGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTg                                                                                                                                                                                                              >  1:2496261/1‑289 (MQ=255)
                                                                  aGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTg                                                                                                                                                                                                              >  1:2648603/1‑289 (MQ=255)
                                                                  aGGCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTCTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACCCAGCTGGTTg                                                                                                                                                                                                              >  2:2397083/1‑289 (MQ=255)
                                                                   ggCGGTTATGATCTCTCATGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTgg                                                                                                                                                                                                             >  2:1796883/1‑289 (MQ=255)
                                                                                tctcatGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCgttgt                                                                                                                                                                                                <  1:1335410/284‑1 (MQ=255)
                                                                                  tcatGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCgttgtt                                                                                                                                                                                               >  1:3063572/4‑288 (MQ=255)
                                                                                     tGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCGGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCCGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATACTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGCAGGCACCCAGCTGTGTGGCGGTTTGCgttgtttcga                                                                                                                                                                                           >  2:3186118/1‑285 (MQ=255)
                                                                                     tGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGTCGGAGTTGAAAACTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTAGCGGTTTGCgttgtttcga                                                                                                                                                                                           <  1:2213795/289‑5 (MQ=255)
                                                                                          cGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCAATTGCCGAAGGCACTCAGCCGGTTGGCGGTTGGCgttctttcgattgg                                                                                                                                                                                       >  2:1708385/1‑280 (MQ=255)
                                                                                            aaGCGGTAGGCACGATCGCCGGGTTGATGTGTATCGGCCTTGCCAGTCTGGAGAAGCTCAGCAACTACTTCTTTGGCCTGACCAACGTCACC‑ATGTTTGGCATTAATTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCAGCGAATATTTACGGTTGGTATGCGTGGTCGCGACACACCAGTCAGAACGAGGCGGAGTTGAAAATTAGCTGGTTGCCATTGCCGAAGGCCGTCAGCTGGTTGGCGGTTTGCgttggtccgattgt                                                                                                                                                                                       >  2:1272680/1‑276 (MQ=255)
                                                                                             aGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCt                                                                                                                                                                                    <  1:195458/288‑1 (MQ=255)
                                                                                               cGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTTGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCtga                                                                                                                                                                                  <  1:158057/288‑1 (MQ=255)
                                                                                                  tAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCgttgtttcga                                                                                                                                                                                           <  2:2675766/276‑5 (MQ=255)
                                                                                                  tAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCtgatga                                                                                                                                                                               <  1:1060537/288‑1 (MQ=255)
                                                                                                                                gCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGt                                                                                                                                                                                                                                                                          <  1:1440852/167‑1 (MQ=255)
                                                                                                                                gCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGt                                                                                                                                                                                                                                                                          >  2:1440852/1‑167 (MQ=255)
                                                                                                                                   ttGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCgttgtttcgat                                                                                                                                                                                          <  1:1653997/244‑6 (MQ=255)
                                                                                                                                   ttGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGAc                                                                                                                                             <  2:1372710/289‑1 (MQ=255)
                                                                                                                                     gCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGt                                                                                                                                                                                      >  2:1159844/1‑246 (MQ=255)
                                                                                                                                      ccAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTAGCTGGTTGCCATTGCCTCAGGCACGCAGCGGGTTGGCGGTGTGCGTTGTTTTGATTGGTCTGATGATGGTATGTATCATTCCGGTGTTTGCATTTTTGAccc                                                                                                                                           >  2:2265297/1‑288 (MQ=255)
                                                                                                                                           cTGGGGTAGATCAGCACCTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTgg                                                                                                                                     <  2:1934598/289‑1 (MQ=255)
                                                                                                                                                    aTCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGAACCGCGTGGCAGTCATGa                                                                                                                            >  1:2859139/1‑289 (MQ=255)
                                                                                                                                                        gCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCGGAACGCACTCAGCTGGTTGGCAGTTTGCGTTGTTTCGATTGGTCTGATGACGGTACTTATCAGTCCGGTGTTTGCTTTTTTGCCCGGTGGGGCGGTCATTATCAt                                                                                                                        >  2:1670243/1‑289 (MQ=255)
                                                                                                                                                         cAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCAt                                                                                                                        >  1:2168460/1‑288 (MQ=255)
                                                                                                                                                           actactTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGa                                                                                                                            <  2:828142/282‑1 (MQ=255)
                                                                                                                                                           actactTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCa                                                                                                                     <  1:791591/289‑1 (MQ=255)
                                                                                                                                                              actTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCtgatga                                                                                                                                                                               <  2:1752747/228‑1 (MQ=255)
                                                                                                                                                              actTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTgg                                                                                                                                     >  2:642967/1‑270 (MQ=255)
                                                                                                                                                              actTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTgg                                                                                                                                     <  1:642967/270‑1 (MQ=255)
                                                                                                                                                              actTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGc                                                                                                                      <  1:591766/285‑1 (MQ=255)
                                                                                                                                                                ttcttTGGCCTGATCAACTTCACC‑TTGTTTGTCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TTCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACCAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTTGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCAt                                                                                                                <  1:956507/289‑1 (MQ=255)
                                                                                                                                                                 tttttGCCCTG‑TCAAAGTCACCTTTTTTTGGCATTTTTTTCTTTAAG‑TTCAGGCTTTTGCCAGCCTTGTTATT‑CAGGTGTTTTTCCTTTGCGGGAATTTTTTCCGTTGGGATGGGTGGTCGGGGAAAACCAGTCAGAACGGGGCGGGGTTTGAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGGTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGGCGGTATTTATCAATCCCGTTTTTGCATTTTTGGCCCGCGTGGCAGTCATGATCATGCAAGCATTa                                                                                                              <  2:1321089/287‑1 (MQ=255)
                                                                                                                                                                          tGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCg                                                                                                                                                                                                                                                              <  1:1710164/137‑1 (MQ=255)
                                                                                                                                                                            aTCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCg                                                                                                                                                                                                    <  1:547356/193‑1 (MQ=255)
                                                                                                                                                                            aTCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCg                                                                                                                                                                                                    <  2:2099441/193‑1 (MQ=255)
                                                                                                                                                                            aTCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAgg                                                                                                    >  1:2956562/1‑289 (MQ=255)
                                                                                                                                                                            aTCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAgg                                                                                                    >  2:1207870/1‑289 (MQ=255)
                                                                                                                                                                            aTCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACCCAGGTGGTTGGCGGTTTGCGTGGTGTCGATTGGTCTGATGACGGTATTTATAACTCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCGTGATCATTCAAGAATGTGGATTACggg                                                                                                    >  2:2770261/1‑289 (MQ=255)
                                                                                                                                                                                aCGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTtgt                                                                                                <  1:2736598/289‑1 (MQ=255)
                                                                                                                                                                                 cGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTgg                                                                                                                                     >  1:287632/1‑251 (MQ=255)
                                                                                                                                                                                      cc‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCgttgtttcga                                                                                                                                                                                           >  1:681499/1‑188 (MQ=255)
                                                                                                                                                                                      cc‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCgttgtttcga                                                                                                                                                                                           <  2:681499/192‑5 (MQ=255)
                                                                                                                                                                                      cc‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCtgatga                                                                                                                                                                               <  1:2983045/204‑1 (MQ=255)
                                                                                                                                                                                      cc‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTgg                                                                                                                                     >  1:2341973/1‑246 (MQ=255)
                                                                                                                                                                                          tGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGa                                                                                       >  1:2081050/1‑289 (MQ=255)
                                                                                                                                                                                            tttGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACCGGTTGTGATTGCTGa                                                                                       >  2:448145/1‑287 (MQ=255)
                                                                                                                                                                                                        ttctttcAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACg                                                                         <  1:452136/289‑1 (MQ=255)
                                                                                                                                                                                                             tccgATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCCGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTc                                                                    <  1:1671119/286‑1 (MQ=255)
                                                                                                                                                                                                             tcAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTc                                                                    <  1:215421/289‑1 (MQ=255)
                                                                                                                                                                                                              cAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTc                                                                    >  1:37317/1‑288 (MQ=255)
                                                                                                                                                                                                                gATTCAGCTGTATGGCCGCC‑TGCTATTACAGGTTTTTTTCTTTGCCGCGAATATTTCCGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAAGTCGCGGGTTGCCATTGCCTAAGGCACTCAGCTGGGTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCTGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCg                                                                 <  2:3031933/289‑1 (MQ=255)
                                                                                                                                                                                                                           aTGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGAttc                                                      <  1:406903/289‑3 (MQ=255)
                                                                                                                                                                                                                            tGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGAttca                                                     >  1:1008249/1‑286 (MQ=255)
                                                                                                                                                                                                                             gCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGAttcat                                                    <  1:1207870/289‑5 (MQ=255)
                                                                                                                                                                                                                               cAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTgg                                                                                                                                     <  1:2682226/206‑1 (MQ=255)
                                                                                                                                                                                                                               cAGCC‑TGATAGTTCTGGTGTGTTTCTTTGCGGGGAATTTTTAAGAGTGGCAGTGGTGGTCGCGCAAAACCCTGAAGACCGAGGCGGGGTTTAAAATTCGCTGGTTGCACTTGCAGAAGGCCCTTGGGTGGTTTGCGGTTTGCGTTGTTTCGATTGGTCTGTTGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTGTCCCGTTCTGGGAttcatg                                                   <  2:2575414/288‑6 (MQ=255)
                                                                                                                                                                                                                                   c‑TGCTATTACAGTTGTTTTTCTTTTCCGCGAATACTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                              <  1:3186118/289‑1 (MQ=255)
                                                                                                                                                                                                                                   c‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                              <  2:1008249/289‑1 (MQ=255)
                                                                                                                                                                                                                                    ttGCTATTCCATGTGTTTTGTTTTCCCGCGAATATTTACGGTTGGGATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGACAATTCGCTGGTTGCCATTGCCGCAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                              <  2:2859139/288‑1 (MQ=255)
                                                                                                                                                                                                                                    ctgttatgcatgttgtTTTTCTTTGCCGATAATATTTACGGTTGGGATGGGTGGACGCGACACACCCGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                              <  2:1888250/276‑1 (MQ=255)
                                                                                                                                                                                                                                     tGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCa                                                                                                                                                                                                                                      <  2:2711613/104‑1 (MQ=255)
                                                                                                                                                                                                                                     tGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCcgcg                                                                                                                                        <  2:207209/198‑1 (MQ=255)
                                                                                                                                                                                                                                     tGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTcatgcatg                                               >  1:2559308/1‑287 (MQ=255)
                                                                                                                                                                                                                                     tGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgat                                             >  1:2707427/1‑289 (MQ=255)
                                                                                                                                                                                                                                     tGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCA‑TTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgatg                                            <  1:1904026/289‑1 (MQ=255)
                                                                                                                                                                                                                                      gCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgatg                                            <  1:2030046/289‑1 (MQ=255)
                                                                                                                                                                                                                                      gCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatgatg                                            <  2:540051/289‑1 (MQ=255)
                                                                                                                                                                                                                                       cTATTACAGGTGTTTCTCTTTGCCGCGAATATTTACGGTGGGTATGCGTGTTCGCGACAAACCAGTCATAACGAGACGGAGTTGAAAAATCGCTGGTTGCCATTGTCGCAGGCACTCAGCTGGTTGCCGTTTTGCGTTGTTTGGATTGGTCTGATGACGCTAGTTATCAACCCGGTGTTTGCATTTTTGACCCGAGTGGCAGTCATGATCATGCAAGCATCTGCATGACAGGTTTTGATGCCTGAACTGCAACCGGACGCTTTACCGTTCTGGGATTCATGCATGATgg                                           >  2:3096074/1‑289 (MQ=255)
                                                                                                                                                                                                                                        tATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGgt                                          <  2:1595146/289‑1 (MQ=255)
                                                                                                                                                                                                                                               ggTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCAt                                                                                                                >  1:859908/1‑212 (MQ=255)
                                                                                                                                                                                                                                                 tgtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCgttgtttcga                                                                                                                                                                                           <  1:3168420/135‑5 (MQ=255)
                                                                                                                                                                                                                                                 tgtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCgttgtttcga                                                                                                                                                                                           >  2:3168420/1‑131 (MQ=255)
                                                                                                                                                                                                                                                 tgtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTgg                                                                                                                                     <  1:1865402/189‑1 (MQ=255)
                                                                                                                                                                                                                                                 tgtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGAttcatgca                                                 >  1:1796752/1‑266 (MQ=255)
                                                                                                                                                                                                                                                 tgtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGAttcatg                                                   >  1:1101647/1‑266 (MQ=255)
                                                                                                                                                                                                                                                 tgtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGAttcatg                                                   <  2:1101647/271‑6 (MQ=255)
                                                                                                                                                                                                                                                 tgtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTtatctat                                 >  2:437163/1‑289 (MQ=255)
                                                                                                                                                                                                                                                 tgtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTtatctat                                 >  1:1286960/1‑289 (MQ=255)
                                                                                                                                                                                                                                                  gtTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCa                                                                                                                     >  1:1170653/1‑204 (MQ=255)
                                                                                                                                                                                                                                                    ttttCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTg                                                                                                                                                       <  2:577993/168‑1 (MQ=255)
                                                                                                                                                                                                                                                           tGCCGCGAATATTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGCTTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCAGGCATGATGGTGTTATCTATCGTGGCAATg                       >  2:2890909/1‑289 (MQ=255)
                                                                                                                                                                                                                                                                   atatTTACGGTTTGAATGCGTGGTCGCGAAAAAGCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGACAGTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCtgat               <  2:2934598/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                     atTTACGGTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCtgatga             <  2:2185273/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                           ggTTGGTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGTATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGt        <  1:1133692/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                               ggTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCa                                                                                                                     <  2:2969837/175‑1 (MQ=255)
                                                                                                                                                                                                                                                                               ggTATGCGTGGTCGCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTTCGATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATTCATGCatga                                              <  1:2317605/246‑1 (MQ=255)
                                                                                                                                                                                                                                                                                          |||                                                                                                                                                                                                                                                                                    
ACGCTTTGGGGGAAAGATGGATTTTTTTAGTGTGCAGAATATCCTGGTACATATACCAATAGGGGCAGGCGGTTATGATCTCAGTTGGATCGAAGCGGTAGGCACGATCGCCGGGTTGCTGTGTATTGGCCTTGCCAGTCTGGAGAAGATCAGCAACTACTTCTTTGGCCTGATCAACGTCACC‑TTGTTTGGCATTATTTTCTTTCAGATTCAGCTGTATGCCAGCC‑TGCTATTACAGGTGTTTTTCTTTGCCGCGAATATTTACGGTTGGTATGCGTGGAGCCGACAAACCAGTCAGAACGAGGCGGAGTTGAAAATTCGCTGGTTGCCATTGCCGAAGGCACTCAGCTGGTTGGCGGTTTGCGTTGTTAGCATTGGTCTGATGACGGTATTTATCAATCCGGTGTTTGCATTTTTGACCCGCGTGGCAGTCATGATCATGCAAGCATTAGGATTACAGGTTGTGATGCCTGAACTGCAACCGGACGCTTTCCCGTTCTGGGATAGTTGCATGATGGTGTTATCTATCGTGGCAATGATTCTGATGACGCGTAAGTAT  >  CP042583/645984‑646542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A