Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A2 F210 I1 R1 4928 368.7 6392010 97.5% 6232209 231.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP042583 793,410 3 bp→CGA intergenic (–/–) – / – –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP042583793,4100GC99.7% 838.0 / ‑5.5 351intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base C (178/172);  minor base . (1/0);  total (179/172)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583793,4110CG99.1% 816.7 / ‑6.0 351intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base C (2/0);  major base G (175/170);  minor base A (2/1);  total (179/172)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
*CP042583793,4120TA98.9% 828.3 / NA 351intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base A (176/170);  minor base C (2/2);  total (179/172)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 351 total aligned reads displayed.

TTCCATTGTCCGTTGGCGGAAATCTTCGCTAGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACGC‑TCACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGAATATT  >  CP042583/793134‑793691
                                                                                                                                                                                                                                                                                    ||||                                                                                                                                                                                                                                                                                       
  ccATTGTCCGTTGGCGGAAATCTTCCGAAGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGATAGAGGGGAAGATTGCCACATCAACCTGCAAC‑GCACCCGACACTGCCAgcg                                                                                                                                                                                                                                                                              >  2:2142864/1‑288 (MQ=255)
          cGTTGGCGGAAATCTTCCGAAGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCg                                                                                                                                                                                                                                                                     <  1:2224311/289‑1 (MQ=255)
            ttGGCGGAAATCTTCCGAAGCAGAACGAATACTTTCAATTTCAGCTTCACCAC‑ACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGAACGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGGCGGTTAGCATCGGCAGCCCCCATTCCCACCAGCCCCCTAAACAACGGAATTAACGGTGGAGGTGCCAGCCGGATGGGCGCCGCCGCCCAGGTAGAGGGGAAGATTGCCACCAAAAACAACCACGGCACCG‑ACACTGCCAGCGCCATTTGCCGCa                                                                                                                                                                                                                                                                  >  2:1995526/1‑289 (MQ=255)
             tGGCGGAAATCTTCCGAAGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCa                                                                                                                                                                                                                                                                  >  1:1754798/1‑289 (MQ=255)
                    aaTCTTCCGAAGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCTCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACTGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGc                                                                                                                                                                                                                                                            <  1:1934831/288‑1 (MQ=255)
                    aaTCTTCCGAAGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCg                                                                                                                                                                                                                                                           >  2:1653266/1‑289 (MQ=255)
                      tcttccgaaGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTg                                                                                                                                                                                                                                                         <  2:2400387/281‑1 (MQ=255)
                      tcttccgaaGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTg                                                                                                                                                                                                                                                         <  2:2738547/281‑1 (MQ=255)
                           cgaaGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg                                                                                                                                                                                                                                                    <  2:898654/286‑1 (MQ=255)
                           cgaaGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg                                                                                                                                                                                                                                                    <  2:2698833/286‑1 (MQ=255)
                           cgaaGCAGAACGAATACTTTCAATTTCAGCTACACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg                                                                                                                                                                                                                                                    <  1:845415/286‑1 (MQ=255)
                                 aGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAAt                                                                                                                                                                                                                                                <  1:2651488/287‑1 (MQ=255)
                                   aaCGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTa                                                                                                                                                                                                                                                  <  2:2322054/283‑1 (MQ=255)
                                   aaCGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTa                                                                                                                                                                                                                                                  >  1:2322054/1‑283 (MQ=255)
                                        aTACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATa                                                                                                                                                                                                                                                              <  2:1938560/266‑1 (MQ=255)
                                             ttCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATa                                                                                                                                                                                                                                                              <  2:2065146/261‑1 (MQ=255)
                                                  tttCAGCTTCACC‑CCACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGc                                                                                                                                                                                                                            <  1:1995526/289‑1 (MQ=255)
                                                         ctgaccacGCCCAAAAATACCCAATGTTTCCATTCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAACGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCg                                                                                                                                                                                                                         <  2:709214/283‑1 (MQ=255)
                                                                               aaTGGTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCg                                                                                                                                                                                                <  1:2715745/289‑1 (MQ=255)
                                                                                         tGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAACCATGCAGATCGTCAATTTGCCCGAGTACCAGCGTCGCCCAGCCCCCCGCAGGtttcc                                                                                                                                                                                       >  2:3130634/1‑286 (MQ=255)
                                                                                             gcgcAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGa                                                                                                                                                                                  >  1:2574438/1‑289 (MQ=255)
                                                                                              cgcAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCg                                                                                                                                                                                                >  1:726265/1‑274 (MQ=255)
                                                                                                cAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAAt                                                                                                                                                                                >  2:275841/1‑288 (MQ=255)
                                                                                                                 gCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTg                                                                                                                                                                                                                                                         <  2:3026710/198‑1 (MQ=255)
                                                                                                                 gCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTg                                                                                                                                                                                                                                                         >  1:3026710/1‑198 (MQ=255)
                                                                                                                 gCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGc                                                                                                                                                                                                      <  1:2499391/249‑1 (MQ=255)
                                                                                                                 gCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCttg                                                                                                                                                              >  1:1237473/1‑289 (MQ=255)
                                                                                                                 gCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCttg                                                                                                                                                              >  1:223291/1‑289 (MQ=255)
                                                                                                                 gCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGACAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGc                                                                                                                                                                                                      >  2:2499391/1‑249 (MQ=255)
                                                                                                                     aCTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCCGCGTCGCCCAGCTccc                                                                                                                                                                                                  >  2:2866763/1‑249 (MQ=255)
                                                                                                                     aCTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTccc                                                                                                                                                                                                  <  1:2866763/249‑1 (MQ=255)
                                                                                                                      cTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCGCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCa                                                                                                                                                         <  2:641855/289‑1 (MQ=255)
                                                                                                                        tAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGa                                                                                                                                                       <  1:1428664/289‑1 (MQ=255)
                                                                                                                          aGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACg                                                                                                                                                     >  2:1308125/1‑289 (MQ=255)
                                                                                                                           gCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGAc                                                                                                                                                      <  2:228446/287‑1 (MQ=255)
                                                                                                                           gCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGAc                                                                                                                                                      >  1:228446/1‑287 (MQ=255)
                                                                                                                                cAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGcc                                                                                                                                                                     >  2:1859576/1‑267 (MQ=255)
                                                                                                                                cAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCgag                                                                                                                                               >  1:247491/1‑289 (MQ=255)
                                                                                                                                cAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTCGTTGCAGACGGTCgag                                                                                                                                               >  2:1176235/1‑289 (MQ=255)
                                                                                                                                 aaGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTa                                                                                                                                                                                                                                                  <  2:1746644/189‑1 (MQ=255)
                                                                                                                                 aaGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGc                                                                                                                                                                                                                            >  1:2060244/1‑211 (MQ=255)
                                                                                                                                       gagaAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGa                                                                                                                                        <  1:1653266/289‑1 (MQ=255)
                                                                                                                                               tACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCt                                                                                                                                                                   <  1:295564/254‑1 (MQ=255)
                                                                                                                                               tACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCt                                                                                                                                                                   >  2:295564/1‑254 (MQ=255)
                                                                                                                                                      gTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCg                                                                                                                                                                                                <  2:268658/218‑1 (MQ=255)
                                                                                                                                                      gTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCg                                                                                                                                                                                                >  1:268658/1‑218 (MQ=255)
                                                                                                                                                       ttAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAACCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGc                                                                                                                        >  1:1335065/1‑289 (MQ=255)
                                                                                                                                                              cGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGatat                                                                                                                  >  1:2780965/1‑288 (MQ=255)
                                                                                                                                                                gCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCCTAGTAATCATGCATATCGTCAATTTGCTCGATTACCAGCGTCGCCCAGCTCCCCGCAGCTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCATACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGatat                                                                                                                  >  2:2230478/1‑286 (MQ=255)
                                                                                                                                                                gCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg                                                                                                                                                                                                                                                    >  2:2488466/1‑156 (MQ=255)
                                                                                                                                                                     ccccATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg                                                                                                                                                                                                                                                    <  2:2348829/151‑1 (MQ=255)
                                                                                                                                                                     ccccATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAg                                                                                                                                                                                                                                                    >  1:2348829/1‑151 (MQ=255)
                                                                                                                                                                          ttCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGccc                                                                                                           >  1:456681/1‑283 (MQ=255)
                                                                                                                                                                          ttCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGccc                                                                                                           <  2:456681/283‑1 (MQ=255)
                                                                                                                                                                                  aGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAaccc                                                                                              >  1:1541682/1‑288 (MQ=255)
                                                                                                                                                                                   gcgcCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAaccca                                                                                             >  1:1678898/1‑288 (MQ=255)
                                                                                                                                                                                    cgcCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGt                                                                                                                                                                                           <  2:1430273/193‑1 (MQ=255)
                                                                                                                                                                                    cgcCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGc                                                                                                                                                                 <  1:274266/219‑1 (MQ=255)
                                                                                                                                                                                    cgcCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAacccac                                                                                            >  1:800415/1‑288 (MQ=255)
                                                                                                                                                                                          aaaCAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTcg                                                                                     <  2:2780965/289‑1 (MQ=255)
                                                                                                                                                                                                cGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCg                                                                                                                                                                                                <  1:1162676/176‑1 (MQ=255)
                                                                                                                                                                                                cGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTaa                                                                                >  2:1872180/1‑288 (MQ=255)
                                                                                                                                                                                                cGGAATGAACGGTGCAGTGCCCAGCAGAATGCGCGACGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAAc                                                                               <  2:1335065/289‑1 (MQ=255)
                                                                                                                                                                                                   aaTTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCa                                                                             <  1:1627142/288‑1 (MQ=255)
                                                                                                                                                                                                     ttAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAac                                                                                                >  1:2098365/1‑267 (MQ=255)
                                                                                                                                                                                                                 tGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTg                                                                                                     >  2:488203/1‑250 (MQ=255)
                                                                                                                                                                                                                 tGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTg                                                                                                     <  1:488203/250‑1 (MQ=255)
                                                                                                                                                                                                                 tGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCAACCAGgcgg                                                               >  2:605252/1‑287 (MQ=255)
                                                                                                                                                                                                                  gCCCAGCAGAAGGGACGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACCCTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATgcgcg                                                              <  2:1678898/288‑1 (MQ=255)
                                                                                                                                                                                                                   cccAGAAGAATGGCGGCCCCAGCCAAGTAAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATgcgcgc                                                             <  2:800415/288‑1 (MQ=255)
                                                                                                                                                                                                                      agcagAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTAccc                                                                                                                                                                                     >  1:976802/1‑165 (MQ=255)
                                                                                                                                                                                                                      agcagAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTcg                                                                                     <  1:3059188/261‑1 (MQ=255)
                                                                                                                                                                                                                      agcagAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGt                                                          >  1:2157881/1‑288 (MQ=255)
                                                                                                                                                                                                                           aaTGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAg                                                    >  2:2895574/1‑289 (MQ=255)
                                                                                                                                                                                                                               aGCGCCGCAGCCCAGTTGGAGGGGAAGATTGCCACCACAATCAGCAACGACACCG‑CCACTGCCAGCGCCATTGGCGGCAGATAGAGGGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTc                                                 <  2:2590728/288‑1 (MQ=255)
                                                                                                                                                                                                                                gcgcCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAg                                               >  1:3162349/1‑289 (MQ=255)
                                                                                                                                                                                                                                 cgccgcAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAg                                               <  2:1555762/288‑1 (MQ=255)
                                                                                                                                                                                                                                 cgccgcAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAG‑AACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATc                                                                                                                                                                               >  2:1111849/1‑159 (MQ=255)
                                                                                                                                                                                                                                 cgccgcAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAG‑AACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATc                                                                                                                                                                               <  1:1111849/159‑1 (MQ=255)
                                                                                                                                                                                                                                  gccgcAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAATCGGCTATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCACACCACCCATCCGCCCAGTACAAAggctgtc                                              >  2:3041814/1‑283 (MQ=255)
                                                                                                                                                                                                                                  gccgcAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGa                                              >  1:533946/1‑288 (MQ=255)
                                                                                                                                                                                                                                   ccgcAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAAc                                            <  2:1606333/289‑1 (MQ=255)
                                                                                                                                                                                                                                     gcAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGAt                                                                                                                                >  2:2031592/1‑203 (MQ=255)
                                                                                                                                                                                                                                     gcAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGAt                                                                                                                                <  1:2031592/203‑1 (MQ=255)
                                                                                                                                                                                                                                      cAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCg                                                                                                          >  1:1746532/1‑224 (MQ=255)
                                                                                                                                                                                                                                              ttcgcggggAAGCTTGCCCCCACAATCAGCAACGGCCCCG‑ACACTGCCAGCGCCATTTGCGGCAGATGGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAAc                                            <  2:1203390/273‑1 (MQ=255)
                                                                                                                                                                                                                                                   ggggAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCgg                                                                                                                      >  1:1687682/1‑199 (MQ=255)
                                                                                                                                                                                                                                                   ggggAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGGAAAGGGa                            >  2:528951/1‑289 (MQ=255)
                                                                                                                                                                                                                                                      gAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGa                                                                                                                                                       >  2:1483381/1‑163 (MQ=255)
                                                                                                                                                                                                                                                      gAAGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGa                                                                                                                                                       <  1:1483381/163‑1 (MQ=255)
                                                                                                                                                                                                                                                       aaGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGTAAAGGGAagca                        >  1:1004704/1‑289 (MQ=255)
                                                                                                                                                                                                                                                       aaGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGTAAAGGGAagca                        >  2:823308/1‑289 (MQ=255)
                                                                                                                                                                                                                                                        aGATTGCCACCACAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGa                                                                           <  1:1881446/237‑1 (MQ=255)
                                                                                                                                                                                                                                                              ccaccaCAATCAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGGGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCCCGCAGTACAAAGGTCAGAACCAGTAACGGAAAGGACAGCAGAAggg                  >  2:1739677/1‑288 (MQ=255)
                                                                                                                                                                                                                                                                        cAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGa       <  1:1962861/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                        cAGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGa       <  2:2614680/289‑1 (MQ=255)
                                                                                                                                                                                                                                                                         aGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCga                                                                                                                                                <  1:331943/151‑1 (MQ=255)
                                                                                                                                                                                                                                                                         aGCAACGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCga                                                                                                                                                >  2:331943/1‑151 (MQ=255)
                                                                                                                                                                                                                                                                            caCGGCACCG‑ACACTGCCAGCGACATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGTAAAGGGAAGCAGCAGGGCTTCACGTGGAata    <  1:2902338/287‑1 (MQ=255)
                                                                                                                                                                                                                                                                            aaCGGCACCG‑ACACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGAata    <  1:619985/288‑1 (MQ=255)
                                                                                                                                                                                                                                                                                    ||||                                                                                                                                                                                                                                                                                       
TTCCATTGTCCGTTGGCGGAAATCTTCGCTAGCAGAACGAATACTTTCAATTTCAGCTTCACCACGACCAAAAATACGCAATGTTTCCATGCCGCGCAGGCGATCGAGGAAATGCCCACTTAAGCGAGCAAGAGCGAGAAAGTTACGTCGGTTAGCATCGGCAGCCCCCATTCCAACCAGCGCCATAAACAACGGAATTAACGGTGCAGTGCCCAGCAGAATGAGCGCCGCAGCCCAGTTAGAGGGGAAGATTGCCACCACAATCAGCAACGGCACGC‑TCACTGCCAGCGCCATTTGCGGCAGATAGCGTGCATAGTAATCATGCATATCGTCAATTTGCTCGAGTACCAGCGTCGCCCAGCTCCCCGCAGGTTTACCCTGAATCCACGCTGGCCCTGCTTGTTGCAGACGGTCGAGAACCTGACGGCGGATGGCAAAGCGGATATGCTGCCCGGCGTGATAACCCACCCGTTCGCGTAACCAGACCACCCATGCGCGCAGTACAAAGGTCAGAACCAGTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGAATATT  >  CP042583/793134‑793691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A