Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A24 F184 I1 R1 14 40.6 1471776 90.4% 1330485 142.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,976,197 Δ9 bp coding (1052‑1060/1131 nt) wecE → TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3976197 3976205 9 43 [0] [0] 44 wecE TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 39761960 (0.000)41 (1.080) 34/266 0.1 100% coding (1051/1131 nt) wecE TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase
?NC_000913 3976206 = 0 (0.000)coding (1061/1131 nt) wecE TDP‑4‑oxo‑6‑deoxy‑D‑glucose transaminase

GATK/CNVnator alignment

N/A