Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A24 F184 I2 R1
|
15 |
56.1 |
2030262 |
91.3% |
1853629 |
141.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
1,646,088 |
Δ14 bp |
coding (192‑205/306 nt) |
ydfV → |
Qin prophage; uncharacterized protein |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
1646088 |
1646101 |
14 |
61 [0] |
[0] 61 |
ydfV |
Qin prophage; uncharacterized protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 1646087 | 0 (0.000) | 61 (1.100) |
55/278 |
0.0 |
100% |
coding (191/306 nt) |
ydfV |
Qin prophage; uncharacterized protein |
| ? | NC_000913 |
1646102 = |
0 (0.000) | coding (206/306 nt) |
ydfV |
Qin prophage; uncharacterized protein |
GATK/CNVnator alignment
N/A
