Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F9 I0 R1	75	124.0	2465218	96.8%	2386331	230.2

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	4,151,329	T→G	19.3%	A590A (GCA→GCC)	ppc ←	phosphoenolpyruvate carboxylase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,151,329	0	T	G	19.3%	140.1 / 3.9	80	A590A (GCA→GCC)	ppc	phosphoenolpyruvate carboxylase
Reads supporting (aligned to +/- strand): ref base T (45/13); new base G (11/7); total (59/21)
Fisher's exact test for biased strand distribution p-value = 2.21e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCA  >  NC_000913/4151093‑4151567

cgGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGGA‑AACCCGCATGAGCAGGTgc                                                                                                                                                                                                                                               >  1:335281/1‑239 (MQ=255)

  gTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCAAGAGAAGGGgcg                                                                                                                                                                                                                                              >  1:379563/1‑238 (MQ=255)

       cATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGcgccgcc                                                                                                                                                                                                                                         <  1:564905/238‑1 (MQ=255)

         tagCAGGAGATGACTGACAGTTCATCCATAACGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCcgcg                                                                                                                                                                                                                                      <  1:837484/237‑1 (MQ=255)

          cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTTGGACAGCT‑GGCCCGCCAGAGCAAGTGcgccgccgcc                                                                                                                                                                                                                                      >  1:173573/1‑237 (MQ=255)

               gagaTGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGGGCGCCGCCGCGCCCAAt                                                                                                                                                                                                                                >  1:1198888/1‑239 (MQ=255)

                  aTGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTTGCGG‑GTGGTACAGAA‑GCGCCGCATGGAGAGGTGGGCCGCCTCCGCCAATGG‑a                                                                                                                                                                                                                            >  2:618990/1‑239 (MQ=255)

                  aTGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGGCCGCA‑GCGCCGCATGTGGAGGGGCGCCGCCGCGCCCAATGG‑a                                                                                                                                                                                                                            >  1:293902/1‑239 (MQ=255)

                    gactgacAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑CCGCCGCATGAGCAGGTGCGCCGCCGCGACCCATGG‑aa                                                                                                                                                                                                                           >  1:905695/1‑238 (MQ=255)

                             ttCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGa                                                                                                                                                                                                                  >  1:409456/1‑238 (MQ=255)

                             ttCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGGGACCACA‑ACCCCCCATGAGCAAGGGGGCCTCCGCGACCAATTG‑AAacgcccgca                                                                                                                                                                                                                  >  2:465866/1‑234 (MQ=255)

                             ttCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTAAGGCTTCCTGGCGG‑CTGTGACAGAA‑GGGCCGCATGAGCAGGGGCGCCGCCGCCACCAATGG‑CAccgccgaca                                                                                                                                                                                                                  >  1:424954/1‑235 (MQ=255)

                               caccattAATGCG‑CGGCAGCCCCCCTTCGGGCTCGGGGGGGGGCGGCAGGTGGGCTCCAAAAACCGCCCGGGAATAAGGCGAGAGGGTGCTAGCGTTGTTTTCGGGCAGCCAATTTTAAAAGC‑GGT‑CCTCCCCCCCCTTTTC‑GGTTCG‑GCGCGGCCCGCCTTCCAGGCTCCCGGGCGT‑TGGTGACAGCA‑GCCCCCCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCg                                                                                                                                                                                                               <  2:178798/233‑1 (MQ=255)

                                 tCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACATCA‑GCGCCGCCTGAGCAGGTGCGCCGCCGCCACCAATGG‑GACCGCCCCGACCggg                                                                                                                                                                                                             >  1:34308/1‑237 (MQ=255)

                                            aCGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCCGGCCGCCTTTCAGGCTTCCTGGCGG‑GTGTGAAAGCC‑ACGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AAACGCCGCGACCGTGGGACAACGTcc                                                                                                                                                                                                  >  1:974585/1‑238 (MQ=255)

                                            aCGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTTTGACAGCA‑GCGCCGCCTGAGCAGGCGCGCCGCCCCGGCCAATGG‑AACCGCCCCGCCCGTGGAACAACGTCa                                                                                                                                                                                                  >  2:334381/1‑239 (MQ=255)

                                            aCGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑CTGTTGCAGCC‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGGGGAACAACGTCa                                                                                                                                                                                                  >  1:98502/1‑239 (MQ=255)

                                            aCGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAAACGCCCCGGGATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGCCCCTATTTAAAGC‑GGT‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCACGCGTCCTGGCGG‑TTGTGACAGGA‑GCGCCGCCTGGGGAGGGGCGCCCTCGCGCACAATGG‑AGACGCCGCGACCGTGGGACAACGTcc                                                                                                                                                                                                  >  2:670745/1‑238 (MQ=255)

                                                   ctctctTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAAt                                                                                                                                                                                           >  1:851484/1‑239 (MQ=255)

                                                       ttgcgctgCTGCGGCGGGGGCGGCTGGTTGGGTTACAGAACCCCCCTGGTATAAAGCCAAGGGCTGCTGCGGGTTTTTTCTGGCAGACCATATTAAAAGC‑GCA‑TCCCCCCGCCTTGTCC‑GGTGCC‑GCGCGGCCCGCTTTTCAGCCTTCGGGGGGT‑TTGGGACGGCG‑GCCCCGCAGGAGCGGGCGCCCCGCCGCGACAAGTGA‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATAcc                                                                                                                                                                                        <  2:379563/232‑1 (MQ=255)

                                                         ttC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGGCCGTGGAACAACGGCAGCTCAATAccc                                                                                                                                                                                       >  1:850889/1‑237 (MQ=255)

                                                              gCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTTTGACAGAA‑GCCCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCCCtttt                                                                                                                                                                                 >  1:879920/1‑239 (MQ=255)

                                                              gCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCCTGAGCAGGTGCGCCGCCGCGCCCAATGG‑AACCGCCGCGACCGTGGGACAACGGCAGCTCCAAACCCCCcttt                                                                                                                                                                                 >  2:1174289/1‑239 (MQ=255)

                                                                   ggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTTGGACCGCA‑GCGCCGCCTGAGCAGGGGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGGGGAACAACGCCCGCCCAATACCCCCttttttcca                                                                                                                                                                            >  1:1158403/1‑235 (MQ=255)

                                                                       gTGGCAGCAGGTTGGTGGACAGACTCGCCGCGGTCTAAAGCGACAGGCTGTGGACGGTGTTTTCTGGCAGACATTTTTTAACGC‑GGA‑TCATCCCCCCCTGTTG‑GGTCCC‑GCGCGGGCCGCCTTCCAGTCTCCCTGGCGG‑TTGTCACAGCG‑GCGCCCCATGAGCGGGGGCGCCGCCGCGACCAATGA‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGt                                                                                                                                                                         <  2:399756/238‑1 (MQ=255)

                                                                                     attgcacaaaccGCCCGGGTATAAGGCGAAAGGCTGCGGAGGTTGATTTCTGCCAGACAATATTAAAGGC‑GGT‑TCTCCCCGCCGTTTTG‑GGTTAC‑CCGCGGGCCCCCTTTCGGGTTTCCGGGGGG‑TGGGGCCAGCA‑GCGCCGCAGGGGCGGGGGCCCCCCCGCTACCAGTGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATc                                                                                                                                                          <  2:771253/228‑1 (MQ=255)

                                                                                      ctcacagacccGCCCGGGTATAAAGGGACGGGCTGGGGGCGGTGGTTTGGGGGAGA‑CATTATTAAAGG‑GGAGCCAGCCCGCCCTGTGG‑GGTCGC‑GCGCGGGCCGCCTTCCGGGCTTCCGGGGGG‑TGGGGACAGCG‑GCGCCGCATGAGCAGGTGCGCCGCCGGGACAAAGGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATc                                                                                                                                                          <  2:213057/228‑1 (MQ=255)

                                                                                       ttCCAGAACCCCCCTGTTATAAAGCGACGGGCTGCGGCCGGTGTTTTCGGGCGGA‑CATTTTTAAAGCGGGA‑TCATCTC‑CCCTTTTCGGGTTCC‑GCGCGGGCCGCTTTCCAGCCTCCCGGGGGT‑TTGTCACAGCG‑GCGCCGCATGAGCGGGGGCCCCGCCGCGACAAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATcat                                                                                                                                                        <  2:1104378/239‑3 (MQ=255)

                                                                                                 gCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGata                                                                                                                                              >  1:470213/1‑239 (MQ=255)

                                                                                                  ccccGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCCTCCTGTGCCTGa                                                                                                                                                >  1:771253/1‑236 (MQ=255)

                                                                                                       gTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCCATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTgcg                                                                                                                                         >  1:283509/1‑238 (MQ=255)

                                                                                                       gTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTgcg                                                                                                                                         >  1:1112892/1‑238 (MQ=255)

                                                                                                             aGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGCGCAGGTGCGCCGCCGCGACCAATGG‑AACCCCCCCGACCGTGGGAAAAAGGCAGCTCAATACCCGCCTTTTCGCAGGGTTTGGTTAATGCATCCTGGTCCCGCTATTGCACCCAGGa                                                                                                                                  >  2:753159/1‑239 (MQ=255)

                                                                                                                 aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGaa                                                                                                                                 >  1:292317/1‑236 (MQ=255)

                                                                                                                 aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGGGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCt                                                                                                                                                                                               >  1:997021/1‑174 (MQ=255)

                                                                                                                 aCAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGGGCGCCGCCGCGACCAATGG‑AACCGCCGCCACCGTGGAACAACGTCCGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCCggca                                                                                                                                 >  1:1215340/1‑234 (MQ=255)

                                                                                                                 aCAGGCTGCTGACGGAGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGGGACAGCA‑GCGCCGCATGAGCCGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGGCCCGGGAACAACGTCAGCTCAATAACCGCTTTTTCCCAGGGTTTGGGTAATGCCTCCTTTGCCTGATATTTAGCCCAGTaaac                                                                                                                               >  2:1181215/1‑236 (MQ=255)

                                                                                                                  cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGCCAGCA‑GCGCCGCATGAGCAGGTGCGCCCCCCCGACCAATGG‑AACCCCCGCGGCCGGGGGACAACGCCCGCCCAATACCCCCTTTTTCCCAGGTTTTGGTTAATGCATCCTTTGCTCGATATTGCGCCCAgggacat                                                                                                                              >  2:1174509/1‑233 (MQ=255)

                                                                                                                  cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGGGCAGGCGCGCCGCCGCGACCAATGG‑AACAGCCGCGACCGTGGAACAACGTCAGCTCCATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATCGCGCCCCGGAAGCt                                                                                                                              >  2:47059/1‑238 (MQ=255)

                                                                                                                  cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt                                                                                                                              >  1:1093674/1‑238 (MQ=255)

                                                                                                                  cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt                                                                                                                              >  1:798294/1‑238 (MQ=255)

                                                                                                                  cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt                                                                                                                              >  1:760100/1‑238 (MQ=255)

                                                                                                                  cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTCCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCCGGAAGCt                                                                                                                              >  1:500107/1‑238 (MQ=255)

                                                                                                                  cAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑ATGTGACAGCA‑GCGCCGCCTGAGCAGGTGCGCCGCCGCGACCAATCG‑AACCTCCCGGAACGTGGGACAACGTCCACCCAATCCCCCTTTTTTACCAGGATTTGATTAATGCATCATGTGCCCGCTCTTGCGCCCCGGAAGATg                                                                                                                             >  2:721882/1‑239 (MQ=255)

                                                                                                                  cAGGCTGAGGCCGGTGCTTTCTGGAAGACCTTATTTATCGC‑GGA‑TCCTATCGCCCTGTTC‑GCGTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGTCGG‑TTGTGTTAGCA‑CCGCCTCCTGAGCCAGGGCTGCGCCGCCACCAATGG‑AACCGGCGCCAGCCTGACACACCGCCAGGTCCATTCGCGCATTTTCGCCGTCTTTGTTTGATGGCTCCACTTCCTGATTTTGCGCCCTggtcacgg                                                                                                                             >  2:573850/1‑233 (MQ=255)

                                                                                                                                tGATTTCTGGCAGCCCTTATTCAAGGG‑GGT‑TCCTCCCGCCTTTTCC‑GGCAGC‑GGGCGGGCCGCTTTGCGGGTTGCGTGGGGG‑TTGTGACACCC‑GGGCCGCGGGAGCGGTGGCCCCCCCGCGACCAATGG‑ATCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGc                                                                                                                <  2:711314/238‑1 (MQ=255)

                                                                                                                                              ccATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATc                                                                                                                                                          >  1:887412/1‑182 (MQ=255)

                                                                                                                                              ccATATTAAAAGG‑GCA‑TCACCGCCCCCTGTGC‑GGTTCC‑CCGCGGGCCGCCTTCCGGGCTTCGGGGGGT‑TGGTGACAGCC‑GCGCCGCTGGGGCGGGTGCCCCCCCGCGCCCAATGG‑ACCCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAg                                                                                                   <  2:470213/237‑1 (MQ=255)

                                                                                                                                                 tatTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGCTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCCCTCCCGCATCTTTTGCTGAGTCGGa                                                                                              >  1:518188/1‑239 (MQ=255)

                                                                                                                                                       aaGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGGACAACGTCAGCTCAATCACCGCTTTTTCGCAGGGTTTGGTTAATGCATCCTGCGCCTGATATTGCGCCCACGAAGCTGTCATCACTCCCCCGTCTTTTTCTTGGTCGGGATAgac                                                                                        >  2:230195/1‑237 (MQ=255)

                                                                                                                                                        aGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGa                                                                                                                                  >  1:4170/1‑196 (MQ=255)

                                                                                                                                                            tgtgcccccccGCCCTTTTC‑GGTGCC‑GCGCGGGCCCCCTGTCGGGCTCCGTGGGGG‑TGGGCAGACCC‑GCGCCGCATGAGCGGGTGCGCCGCGGGGA‑CAATGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCaa                                                                                      <  2:1198888/228‑1 (MQ=255)

                                                                                                                                                             gA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCCTGAGCCGGTGCGCCGCCGCGACCAATGG‑AACCCCCCCGCCCGCGGAACAACGTCAGCCCAATAACCCCTTTTTCGCAGGTTTTGATTAAAGCCTCCCGTGCCTGATATTTCGCCCCGGAAGCTGCCCTCTCTTCCGCCTCTTTTGCTGGGTCGGCATAGCCAatca                                                                                   >  2:740184/1‑239 (MQ=255)

                                                                                                                                                             gA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca                                                                                   >  1:751300/1‑239 (MQ=255)

                                                                                                                                                             gA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAAAACCCGCTTTTTCGCAGGGTTTGGTTAATGCATCCTGTGCCGGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTGGGAATAGCCAatca                                                                                   >  1:396344/1‑239 (MQ=255)

                                                                                                                                                              ggatcacccccccTTTTC‑GGGTTCGGCGCGGCCCCCCTTTCAGGCTTCCGGGCGG‑TTGGGACAGCA‑GCGCCGAATGAGCGGGGGCCCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAat                                                                                     <  1:334381/228‑1 (MQ=255)

                                                                                                                                                              a‑tcatcTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGCCCAATGG‑AACCGCCGCGACCGTGGAACCACGTCAGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCGGATATTGCGCCCAGGAAGCTGCCATCCCTCCCGCCTCTTTTTCTGATTCGGAATAGCCAatca                                                                                   >  2:1173245/1‑238 (MQ=255)

                                                                                                                                                              a‑tcatcTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGGGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca                                                                                   >  2:915980/1‑238 (MQ=255)

                                                                                                                                                              a‑tcatcTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAACA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCCCAATAACCGCCTTTTCGCAGGGTTTGGTTAATGCATCCTGTGCCTGATATTGCGCCCCGGAAGCTGGCATCACTCCCGCATTTTTTGCTGAGTCGGAATAGCCCatca                                                                                   >  2:349609/1‑238 (MQ=255)

                                                                                                                                                              a‑tcatcTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAACA‑ACGCCGCCTGAGCAGGGGCGGCGCCGCGACCAATGG‑AACCGCCCCGACCGTGGGACAACGTCCGCTCAATA‑CCGCTTTTTCGCCGGGTTTGGTTAATGCATCCTGTGCCTGATATTGCCGCCAGGGAGCTGCCATCACTCCCGCATCTTTTGCTGATTCGGGAAAGcccagtat                                                                                  >  2:62829/1‑232 (MQ=255)

                                                                                                                                                                        cccTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCa                                                                             >  1:841998/1‑235 (MQ=255)

                                                                                                                                                                         ccTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTTTGTCAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCAGTGAACAACTGCACCTCAAAACCCGCTTTTTCACAAGATTTGATTAATGCATCCACTGCCTGATATTTCGCCCCAGAAGCTGCCATCAACCCCGCCACTTTTGCTGAATCGGCATCGGCAATCATCACCCTccat                                                                        >  2:1117146/1‑236 (MQ=255)

                                                                                                                                                                          ttGTTC‑GGTTCC‑GCGCAGGCCGCCTTTCAGGCTTCCGGGGGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTCCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGtt                                                                       <  1:189920/238‑1 (MQ=255)

                                                                                                                                                                             ttC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCCTCTGTTTg                                                                     >  2:997486/1‑238 (MQ=255)

                                                                                                                                                                             ttC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑CCGCCGCCTGAGCAGGTGCGCCGCCGCGCCCAATGG‑TAACGCCGCGACCGTGGAAAAACGTCCGCTCTATAACCGCGTTTTCGCCGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTg                                                                     >  2:754936/1‑238 (MQ=255)

                                                                                                                                                                              tC‑GGTTCC‑GCGGAGGCCGCCTTTCAGGCTTCCTGGGGG‑TTGTGACAGCA‑GCGCCGCAGGAGCGGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc                                                                   <  1:70427/239‑1 (MQ=255)

                                                                                                                                                                                         cgcAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGATCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCTGACTAGCCAATCATCACCATCTGTTTGCCCTGAATctg                                                          >  2:427448/1‑237 (MQ=255)

                                                                                                                                                                                          cgaGGCCCCCTTTCGGGCTTCCGGGGGGTTTGGGAC‑GCAGGCCCCGCAGGAGCGGGGCCCCCCCCGCAACAAATGA‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCa                                                           <  1:431862/236‑1 (MQ=255)

                                                                                                                                                                                          ccgggCCCCCTTCCGGGCTTCTGGGCGT‑TTGTGACAGAC‑GCGCCGCTGGGGCGGGTCCCCCGCCGGGACCAAGGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAg                                                          <  1:706937/235‑1 (MQ=255)

                                                                                                                                                                                            aGGCCGCCTTTCAGGCTTCCGGGGGG‑TTGTGACAGCA‑GCGCCGCATGAGCGGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc                                                        <  1:349609/238‑1 (MQ=255)

                                                                                                                                                                                              gccgccTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCAc                                                     >  1:568011/1‑239 (MQ=255)

                                                                                                                                                                                                            ttCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑GACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCCGTCAata                                       >  1:791719/1‑239 (MQ=255)

                                                                                                                                                                                                              cccggCGG‑TTGTCACTGCA‑GCGCCGCATGAGCAGGAGCGCCGCCCCCACCCATGG‑TACCGGCGCGTCCGTGGAACAACGTCAGCTCAATCCCCGCTTTTTCGCAGGTTTTGATTAATGCATACCGTGCCCGCTATTGTGCCCAGGAAGCTGCCATCAATTCCACCTACTTTCCTCCATACGAACAGCCAACCATCCACACTTGTTTCCCTTGAATCCGGCCACGACACCAggccacatt                                     >  2:297434/4‑231 (MQ=255)

                                                                                                                                                                                                                                 a‑gcGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGAc                   >  1:935701/1‑239 (MQ=255)

                                                                                                                                                                                                                                      ccgcATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCg               >  1:1019043/1‑239 (MQ=255)

                                                                                                                                                                                                                                            gAGCAGGTGCCCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg         <  1:1174289/239‑1 (MQ=255)

                                                                                                                                                                                                                                             aGCAGGGCCCCCGCCGCCCCCAAGGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg         <  2:1093674/238‑1 (MQ=255)

                                                                                                                                                                                                                                                 ggTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt                                                                                                                              <  1:1210677/117‑1 (MQ=255)

                                                                                                                                                                                                                                                 ggTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCt                                                                                                                              >  2:1210677/1‑117 (MQ=255)

                                                                                                                                                                                                                                                  gTGCGCCGCCGCGACAAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCgttgtt    <  1:584443/238‑1 (MQ=255)

                                                                                                                                                                                                                                                   tGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCa  >  1:456441/1‑239 (MQ=255)

CGGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTC‑GGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCATATTTAAAGC‑GGA‑TCATCTCGCCCTGTTC‑GGTTAC‑GCGCAGGCCGCCTTTCAGGCTTCCTGGCGG‑TTGTGACAGCA‑GCGCCGCATGAGCAGGTGCGCCGCCGCGACCAATGG‑AACCGCCGCGACCGTGGAACAACGTCAGCTCAATACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGCGCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCGTTGTTCA  >  NC_000913/4151093‑4151567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A