Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F28 I0 R1 87 172.1 3477528 97.2% 3380157 226.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,151,329 T→G 14.1% A590A (GCA→GCC)  ppc ← phosphoenolpyruvate carboxylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,151,3290TG14.1% 169.6 / 2.2 87A590A (GCA→GCC) ppcphosphoenolpyruvate carboxylase
Reads supporting (aligned to +/- strand):  ref base T (52/15);  new base G (10/6);  total (63/24)
Fisher's exact test for biased strand distribution p-value = 2.18e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCG  >  NC_000913/4151094‑4151560
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                         
ggTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTGCGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTgcg                                                                                                                                                                                                                                        <  1:854806/239‑1 (MQ=255)
      cATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGcgccgcc                                                                                                                                                                                                                                   <  1:944238/238‑1 (MQ=255)
        tCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTGAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGTcgcg                                                                                                                                                                                                                                <  2:1580375/239‑1 (MQ=255)
         cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTTGCGGTTGT‑GGCAGCAGCCCCGCCTGGGC‑AGGTGGGCCCCcccg                                                                                                                                                                                                                                >  1:14557/1‑238 (MQ=255)
         cGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCcgcg                                                                                                                                                                                                                                <  1:487493/238‑1 (MQ=255)
                   gactgacAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCCGCGCCCCATGGGC‑AGGGGCGCCGCCCCGGccgaaggga                                                                                                                                                                                                                      >  2:487493/1‑231 (MQ=255)
                      tgacAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCCCGACCAAAGGAAacg                                                                                                                                                                                                                   >  1:37347/1‑238 (MQ=255)
                        acAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGGTGG‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGGCCAATGGAAccgcc                                                                                                                                                                                                                 >  1:874232/1‑238 (MQ=255)
                              cATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGGATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGGTGT‑GACCGCAGCGCCGCATGAGG‑AGGGGCGACGCCCCGCCCAATGGAAACGCCGCGAcac                                                                                                                                                                                                          >  2:35137/1‑237 (MQ=255)
                                tCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGGCCAATGGAACCGCCGCCACCGTg                                                                                                                                                                                                        >  1:1379756/1‑239 (MQ=255)
                                   atacggccgcGCCAGCTCTTTTTCGGCTCCGGGGGGGGCCGCAGGTTGGCTCCCAGAACCGCCCCGGTAAAAAGCGACGGGCGGCGGCGGGTGTTTTCTGGAAGACTA‑TTTTAAAGGCGGATCACCCCGCCCTGTTCGGTTCCGCGCAGGCCCCCTTTCAGG‑CTTCCTGGCGGTTGG‑GACAGCAGCGCCGCATGAGC‑AGGGGCGCCCCCGCGACCAATGGAACCGCCGCGACCGTGGaa                                                                                                                                                                                                     <  2:579563/230‑1 (MQ=255)
                                      aTGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GGCAGCAGCGCCCCCTGAGC‑AGGGGCGCCGCCGCGACCAAAGGAACCGCCGCGACCGTGGaaca                                                                                                                                                                                                   >  1:378841/1‑238 (MQ=255)
                                      aTGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGaaca                                                                                                                                                                                                   >  1:579563/1‑238 (MQ=255)
                                           aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACCACAGCCCCCCATGAGC‑AGGGGCGCCGCCCCGACCCACTCAACCCCCGCGCCCCTGGCACCACGTcc                                                                                                                                                                                             >  2:1048432/1‑238 (MQ=255)
                                           aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGTACAACGTCa                                                                                                                                                                                             >  1:1025285/1‑239 (MQ=255)
                                           aCGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGGTCGCCCCCGCGAACCAACGAAACGCCCCGCACGTGGTACCACgcc                                                                                                                                                                                              >  2:1449898/1‑236 (MQ=255)
                                            cGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCCTGAGC‑AGGTGACCCGCCGCGACCAATGGAACCGCCGCGACCGGGGAACAACCTCa                                                                                                                                                                                             >  1:754345/1‑238 (MQ=255)
                                                  ctctctTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGTGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCCCAAt                                                                                                                                                                                      >  2:216405/1‑239 (MQ=255)
                                                                cggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTcc                                                                                                                                                                        >  1:1458671/1‑237 (MQ=255)
                                                                 ggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGCCCGGGGGACAACGTCAGCTCAAT‑ACCCGCTTTTTCGcc                                                                                                                                                                      >  1:1511008/1‑238 (MQ=255)
                                                                 ggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCa                                                                                                                                                                      >  1:98745/1‑239 (MQ=255)
                                                                 ggcggTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGGTGT‑GACAGCCGCGCCGCATGAGC‑AGGGGCGCCGCCGCGACCAATGGAACCGCCGCGCCCGTGGAACAACGCCAGCTCAAT‑ACCCGCCTTTTCGCa                                                                                                                                                                      >  1:1257194/1‑239 (MQ=255)
                                                                                 tGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCCGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGG‑GACAGCCGCGCCGCCTGGGC‑AGGCGCGCCTCCGCGACCACTGCTACCCCCGCCACCGGGGAACCACGCCAGCTCAAA‑TCCCGCTTTTTCGCAGGTTTTGATTAAtat                                                                                                                                                       >  2:855836/1‑236 (MQ=255)
                                                                                     ttCGAGACTCGCCTGGGTATAAAGCGACGGGCGGGTGGCGGGGTTTTCGGAAAGACCA‑TTTTTAAAGCGGATCCTCGCGCTCGGTGGGGTTACGCGGAGGCCGCTTTTCGGG‑CTTCCGGGCGTTGGT‑GACAGCGGCGCCGAATGAGG‑GGGGGCGCCGCCGCACCCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCt                                                                                                                                                  <  2:73895/239‑1 (MQ=255)
                                                                                         aGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCCTCCtgtg                                                                                                                                               >  1:1690075/1‑238 (MQ=255)
                                                                                                 ccgggTATAACGCGCCAGGCGTCTGGGGGT‑TTTTTTGGCCAACCATTATTTAAAGCGACCCACCCCGCCTTGTGCGGTCGCGCCCGGGCCGCCTTGCGGG‑CTTCGTGGGGGTTGT‑AACAGCAGCGCCGCAGGAGC‑AGGGGCGCCGCCGCGCCCATTGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATAtt                                                                                                                                      <  2:37347/236‑1 (MQ=255)
                                                                                                               aCAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGGGCCGCATGAGC‑AGGGTCGCAGCCGCGACCAATGGAACCGCCGAGAACGGGGGACAACGTCAGCTTAAT‑ACCCGCTTTTTCGCAGGCATTGATTAATGACTCCTGTGCCTGACATTGT‑GACCCGGaa                                                                                                                          >  2:531633/1‑236 (MQ=255)
                                                                                                               aCAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATAATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACCGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGGACAGCCGCGCCCGCGGAACAACGTCAGCTCAAT‑ACCCGCTCTTTCGCAGGGTTTGTTTAATCACTCCTCTGCCTGATATGGC‑GCCCCggca                                                                                                                          >  2:798996/1‑234 (MQ=255)
                                                                                                                catgctgctGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGTGC‑CGGTGCGCCGCCGCGACCAATGGAACCGCCGCGCCCGGGGAACAACGTCAGCTCAAT‑ACCCCCTTTTTCTCAGGTTTTGTTTAAGGCACCCTGTGTCCGTTATTTC‑GCCCAGGAAGCt                                                                                                                       >  2:1058800/4‑238 (MQ=255)
                                                                                                                cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCCATGGAAACGCCGCGACCGTGGAACAACGGCAGCGCAAT‑ACCCGCTTTTTCGCAGGTTTTGAGTCATGCATCCGGTGCCTGATATTGC‑GCCCACGCAGCTg                                                                                                                      >  2:1370418/1‑239 (MQ=255)
                                                                                                                cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGGACAACGTCCGCTCAAT‑ACCCCCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑CCCCAGGAAGCt                                                                                                                       >  2:396318/1‑238 (MQ=255)
                                                                                                                cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATc                                                                                                                                                    >  1:964226/1‑210 (MQ=255)
                                                                                                                cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCt                                                                                                                       >  1:587605/1‑238 (MQ=255)
                                                                                                                cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCt                                                                                                                       >  1:1057279/1‑238 (MQ=255)
                                                                                                                cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCCCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCACCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTTTGCCTGATATTGC‑GCCCAGGAAGCt                                                                                                                       >  1:632650/1‑238 (MQ=255)
                                                                                                                cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAACAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGA‑GCCCAGGAAGCt                                                                                                                       >  1:1465896/1‑238 (MQ=255)
                                                                                                                cAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGAACATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCCCCGCGACCAATGGAACCGCGCCGACCGTGGAACAAAGTCAGCTCAAA‑ACCCGCTTTTTCGCAGGTTTTGTTTAATTCATACTGTGCCTGATATTGC‑GCCCAGGAAgtt                                                                                                                       >  2:300973/1‑236 (MQ=255)
                                                                                                                cAGGCTGCTGACGGCGCTTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACCGCAGGCCCGCGTGTGC‑CTGTGCGCCGCCGCGACCAAAGGAACCGCGGACAACGTGGAACTACGCGCGCGCACTCACCCG‑TTGTTAGGACGCTTTGTTTACAGCATCCTGGTCCTGATATTGA‑TCCCAGGactcg                                                                                                                       >  2:956162/1‑234 (MQ=255)
                                                                                                                     tgctgACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCCCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GGCAGCAGCGGCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAAACGCCGCGGCCGTGGAACAACGTCAGCTCCAT‑ACCCGCTTTTTCCCAGGTTTTGGTTAATGCATCCCGTGCCTGATATTTC‑GCCCAGGCACCTGCCAt                                                                                                                  >  2:439244/1‑238 (MQ=255)
                                                                                                                       ctgACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGGAACCGGGGGACAACGTCCGCTCAAT‑ACCCGCCTTTTCGCAGGGTTTGGTTAATGCATCCTGGTCCTGATATTGC‑GCCCCGGAAGCTGCCATCa                                                                                                                >  2:123756/1‑238 (MQ=255)
                                                                                                                                 tttCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCt                                                                                                     >  1:1613280/1‑239 (MQ=255)
                                                                                                                                                       aGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAAT‑ACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCCTCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCa                                                                                >  2:109482/1‑239 (MQ=255)
                                                                                                                                                       aGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCCAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATTTTTTGCTGAGTCGGAATAGCCa                                                                                >  1:1498939/1‑239 (MQ=255)
                                                                                                                                                       aGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTTCTTAGTCGGAATAGCCa                                                                                >  1:1583873/1‑239 (MQ=255)
                                                                                                                                                       aGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCACATGAGC‑AGGTGCGCCGCCGCGACCAATTGAACCGCCGCGACCGTGGAACAACGTCAGAGCAAT‑ACCCGCGTTTTCGCCAGCTTTGAGTAATGAATCCTGTGCCTGCTATTGCTGCCCA‑GAAACTGCCATCAAACCCGCATCTTTTGCTGTGTCGGCAGAGCCa                                                                                >  2:1350379/1‑239 (MQ=255)
                                                                                                                                                        gCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCaa                                                                               >  2:190224/1‑239 (MQ=255)
                                                                                                                                                           gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCCGGTTTTGATTAATGCATCCTGTGCCCGATATTGC‑GCCCACGAAGCTTGCATCACTTCCGCCTCTTTTGCTGAGTCGGAATAGCCAatca                                                                            >  2:733413/1‑239 (MQ=255)
                                                                                                                                                           gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGACTAGCCAatca                                                                            >  1:1681263/1‑239 (MQ=255)
                                                                                                                                                           gATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca                                                                            >  1:828724/1‑239 (MQ=255)
                                                                                                                                                            atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCCGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTTC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCCatca                                                                            >  1:848884/1‑238 (MQ=255)
                                                                                                                                                            atcatcTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAatca                                                                            >  1:316024/1‑238 (MQ=255)
                                                                                                                                                                 ctcGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCa                                                                      >  1:1243893/1‑239 (MQ=255)
                                                                                                                                                                      ccTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGt                                                                 >  1:1310800/1‑239 (MQ=255)
                                                                                                                                                                          ttCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGCACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCCATCATCACCATCTGTTTg                                                              >  2:1201899/1‑238 (MQ=255)
                                                                                                                                                                          ttCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTg                                                              >  1:1637441/1‑238 (MQ=255)
                                                                                                                                                                          tgcGGTTACGCGCAGCCCGCTTTTCGGG‑CTTCGTGGGGGTGGG‑GACGGCAGCGCCGCAGGAGC‑AGGTGCCCCGCCGCGACCAATGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAAt                                                                                                                                                         <  2:545072/146‑1 (MQ=255)
                                                                                                                                                                           tgggTTACGCGCGGGCCGCCTTGCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑GGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc                                                            <  1:106274/237‑1 (MQ=255)
                                                                                                                                                                           cgggTTACGCGCGGGCCGCCTTCCGGG‑CTTCCGGGGGTTGGT‑GACCGCAGCGCCGCATGAGC‑AGGCGCGCCGCCGCGACCAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGcc                                                            <  1:768177/237‑1 (MQ=255)
                                                                                                                                                                              gTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCTCTg                                                         >  1:1636148/1‑239 (MQ=255)
                                                                                                                                                                                  cgcgCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACATCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATTCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCACTCATCACCATCTGTTTCCCCTGGATc                                                     >  1:1516368/1‑239 (MQ=255)
                                                                                                                                                                                  cgcgCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGGGCGCCGCCGCGACCAATGGAACCGCCGCGACCGGGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGAGATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGCGTCGGAATAGCCAATCATCACCATCTGTTTTCCCTGAAt                                                      >  2:1098722/1‑238 (MQ=255)
                                                                                                                                                                                   gcgcAGGCCGCCTTTCAGC‑CTCCCTGGCGGTTGC‑GACCGCCGCGCCGCATGAGG‑AGGTGCCCCGCGGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCa                                                    <  1:26975/239‑1 (MQ=255)
                                                                                                                                                                                    cgcgGGCCCCCTTTCAGG‑CTTCCTGGCGGTTGG‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAAGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAAt                                                      <  1:1397449/236‑1 (MQ=255)
                                                                                                                                                                                    cgcAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCtgtg                                                                                                                                               >  1:545072/1‑148 (MQ=255)
                                                                                                                                                                                    cgcAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAg                                                   >  1:280971/1‑239 (MQ=255)
                                                                                                                                                                                       gggCCGCCTTGCGGG‑CTCCCTGGCGTTGGT‑GACAGCAGCGCCGAGAGGGA‑GGGGGCGCGCCCGCGACCAAGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc                                                 <  1:1192941/237‑1 (MQ=255)
                                                                                                                                                                                       aGGCCGTCTTTCGGG‑CTCCCGGGGGGTTGG‑GACGGCAGCGCCGCATGACG‑CGGCGCGCCCCCGCGACCAGGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc                                                 <  2:1637441/238‑1 (MQ=255)
                                                                                                                                                                                       aGGCCGCCTTCCGGG‑CTCCCGGGTGTGTAT‑GACAGCCGCGCCGCAGGAGG‑GGGCGCGCCGCCGCGACCAGGGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGc                                                 <  1:855836/238‑1 (MQ=255)
                                                                                                                                                                                        ggCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACCGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGGACACCGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGGTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGTAGCTGCCCTCACTCCCGCATCTTTTTCTGAGCTGGCATAGCCAATCATCACCCTCTGTTTCCCCTGACTCTGGca                                                >  2:724987/1‑237 (MQ=255)
                                                                                                                                                                                         gccgccTTTCAGG‑CTTCCTGGCGGTTTT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAAACGCCGCGACCGTGGGACAACGTCCGCTCAAT‑ACCCCCTTTTTCGCAGGTTTTGGTTAATGCATCCTGTGc                                                                                                                                              >  1:530668/1‑144 (MQ=255)
                                                                                                                                                                                           ccccTTTCCGT‑CTTGCTGGTGTTGGG‑GCCAGCGCCGCCTCATGAGC‑CGCGCCGCCGCCGCGCCATATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGa                                            <  2:1147984/237‑1 (MQ=255)
                                                                                                                                                                                             ccTTTCGGT‑TTTCCTGGGGTTTGT‑AACAGCCGC‑CCGGCTGGGCAAGGTGGCCCCCCGCGACCAATGGATCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa                                          <  1:1662461/239‑1 (MQ=255)
                                                                                                                                                                                             ccTTTCAGG‑CTTCCGGGGGTTTGG‑GCAGGCGGCGCCGCATGGGC‑GGGTGCGCCGCCGCGACCATGGAAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa                                          <  1:123756/239‑1 (MQ=255)
                                                                                                                                                                                              cTTTCAGGTTTTCCGGGCGGTGGT‑GAACGGAGCGCGGCAGGGGG‑TGGTGGGCCCCCGGGCCCATGGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa                                          <  1:1048432/239‑1 (MQ=255)
                                                                                                                                                                                                   ggg‑CTT‑CTGGGGGTTGAGGACAGCAGCGCCGGAGGGGC‑GGGTGCGCCGCCGCGACCAATGGACCCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGt                                     <  2:739615/237‑1 (MQ=255)
                                                                                                                                                                                                     g‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCaa                                  >  1:970159/1‑239 (MQ=255)
                                                                                                                                                                                                         tCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAatat                               >  1:1508574/1‑239 (MQ=255)
                                                                                                                                                                                                         tCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGGGCGCCGCCGCGACCAATGGAACCGCCGCCACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGATGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAatat                               >  1:1040480/1‑239 (MQ=255)
                                                                                                                                                                                                                  ttGT‑GACAGCGGCCCCGCATGAGC‑GTGTGCGCCCCCGCGACCATTGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGagcagc                       <  1:1449898/238‑1 (MQ=255)
                                                                                                                                                                                                                            cagcGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATg              >  1:336731/1‑238 (MQ=255)
                                                                                                                                                                                                                             ggcgcCGGATGGGC‑AGGGGCCCCGCCGACGCGAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGa             <  1:300973/237‑1 (MQ=255)
                                                                                                                                                                                                                             agcGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATa                                          >  1:577413/1‑209 (MQ=255)
                                                                                                                                                                                                                               cgccgcATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACa           >  1:441631/1‑238 (MQ=255)
                                                                                                                                                                                                                                 ccgcATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATc                                                                                                                                                    >  1:928270/1‑100 (MQ=255)
                                                                                                                                                                                                                                    cATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTg     >  1:1510750/1‑239 (MQ=255)
                                                                                                                                                                                                                                        ggC‑AGGTGCGCCGCCGCAACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg  <  1:216405/237‑1 (MQ=255)
                                                                                                                                                                                                                                         cgcgggTGCCCCCTCGCAACCATGGTAACCGCCGCGACCGTGGAACAACGTCAGCGCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCAGCCCTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCg  <  2:1109367/234‑1 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                         
GGTAGACATCGCAGGAGATGACTGACAGTTCATCCATAATGCGACGCCAGCTCTCTTTCGGCTCCGGCGGTGGCAGCAGGTTGGCTTCCAGAATCGCCCCGGTATAAAGCGACAGGCTGCTGACGGTGATTTCTGGCAGACCA‑TATTTAAAGCGGATCATCTCGCCCTGTTCGGTTACGCGCAGGCCGCCTTTCAGG‑CTTCCTGGCGGTTGT‑GACAGCAGCGCCGCATGAGC‑AGGTGCGCCGCCGCGACCAATGGAACCGCCGCGACCGTGGAACAACGTCAGCTCAAT‑ACCCGCTTTTTCGCAGGTTTTGATTAATGCATCCTGTGCCTGATATTGC‑GCCCAGGAAGCTGCCATCACTCCCGCATCTTTTGCTGAGTCGGAATAGCCAATCATCACCATCTGTTTGCCCTGAATCAGGCCACGATACCAGTCAATATTGAGCAGCTGGGTCATGACATCGTTGGCG  >  NC_000913/4151094‑4151560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A