Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F18 I0 R1
|
150 |
105.7 |
2655328 |
79.3% |
2105675 |
226.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,201,278 |
A→C |
20.6% |
G137G (GGT→GGG) |
zraP ← |
Zn‑dependent periplasmic chaperone |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,201,278 | 0 | A | C | 20.6%
| 140.0
/ 3.7
| 59 | G137G (GGT→GGG) | zraP | Zn‑dependent periplasmic chaperone |
| Reads supporting (aligned to +/- strand): ref base A (41/4); new base C (2/12); total (43/16) |
| Fisher's exact test for biased strand distribution p-value = 1.25e-07 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTGCGCTGCTT > NC_000913/4201047‑4201515
|
gcTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCCTGGCTGGAACCGCCCGAAAGTTCGCAATTACTGTTAGTGGCAAACCCTGTTTTCTGTCGCTGGCAACCAAACGGACAAACGGCTTGATTTCCACGTGGcccacccccataa > 2:1312075/1‑238 (MQ=255)
gcTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAATGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGccacaacccatag > 1:892099/1‑238 (MQ=255)
cTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGcccataccccgtt > 1:203410/1‑234 (MQ=255)
cTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATg > 1:58146/1‑239 (MQ=255)
tGGCATGCGATGGAACAGGCCGTGACCACCTGGGAAGGGCAACCCATTAAACCTGATTTAGATTCGGAGGCGATAGCGCATTTCGAGCGCCGCCAGACCCGCTTTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATg < 1:963658/238‑1 (MQ=255)
gggtaaCAGTCCGGCACCCCCGGGGAGGGGAAACCCATCAACCCTGATTTAGATGCGCAGGCGTTAGGCAATTGCGGGCGCCCGCAGGGCCGCTCTTCTGTTGAGGTCAGCGGGGCATGGCGGGAAGCGCCCGAAGGTCCGAAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGccacc < 2:772623/234‑1 (MQ=255)
aCCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAgcc > 1:633352/1‑238 (MQ=255)
cGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCCCCTCAgccgcc > 1:882541/1‑239 (MQ=255)
cGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTCATTTACCAGTGGCCAATACCCCTTTTACCGCccccactcacaccccc > 1:1141487/1‑229 (MQ=255)
tGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCACACTCTGATTTCTGTCGCTGGCAACCCACCGAGAAAACGTTCTGATTTACCACTTGCCACTACCCATATGACCCCCaccacccaccccccccc > 2:292411/1‑228 (MQ=255)
tGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGt > 1:229338/1‑239 (MQ=255)
tGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCACTGGCCCATACCCATATGACCGCCACAACCGCAACCGCCGt > 1:967991/1‑239 (MQ=255)
gACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGGTTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGccgccgga > 1:666237/1‑237 (MQ=255)
gACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTCTTGATTTTCCAGTGGCCCCTCCCCATATGACGCCCACCACCACGGCAACCGTa > 1:194377/1‑239 (MQ=255)
gACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAAAGTTCTGATTTACCAGTGGCCCATACCCATAGGACCGCCACCACCGGACCCGCCGTa > 1:987011/1‑239 (MQ=255)
gAAGGGAAAACCATTAACCCTGATTTAGTTTCGCGGGCGATAGCGCATATCGAGCGCCGCAAGGGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCCCCCGAAGGTTCGAAATTACTGTTAGTGGAAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGGGGCCCATCCCCATATGACCGCCACCACCGCAGCCGCCGTAgcccatgcc < 1:1008630/238‑1 (MQ=255)
cAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGCCCGCCACCACCGCAGCCGCCGTAACCCATGCCCATTcc > 1:757656/1‑238 (MQ=255)
tAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACCCTGATTTCTGTCGCTGGCAACCCAACGAGCAAACGATCTGATTTACCAGTGGCCCATCCCCATATGACCCCCCCCACCGCCTCCGCCGCAACCCACTCCCATTCCCGCCCcccg > 2:1017887/1‑239 (MQ=255)
gATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAAt > 1:640485/1‑238 (MQ=255)
aTTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATa > 1:561122/1‑238 (MQ=255)
gCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATTCCCATTCCGGCTCCGCCCGGAATACCCGCCTCAg > 1:254367/1‑238 (MQ=255)
aTAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAACCGTTCTGATTTACCACTGGCCCCTACCCATATGACCGCCACCACCGCAGCCGCCGGAGCCCATACCCCTTCCGCCTCCCCACGGCAAAACCCCTTccccccccccg > 2:910278/1‑229 (MQ=255)
atCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCCCGCGGAATACCCGCTTCAGCCATCGCGATATCCCGt > 1:64311/1‑239 (MQ=255)
aGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCCGGCAACCCAACGAGAAACGGTTCTGATTTACCAGTGGCCCATACCCATATGAACGCACCCACCGCCGCCGCCGTAGCCCCTGCCCATTCCGGCTCCGCGCCGAATAACCCCCTCAACCCCCCCGGTAACCCGTTTc > 2:717691/1‑238 (MQ=255)
gcgcCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCa > 1:28360/1‑238 (MQ=255)
cgccgcCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATCCCGGCTCCGCGCGGGATACCCGCTTCAGCCATCGCGATATCTCGTTTCAc > 1:664313/1‑238 (MQ=255)
gTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCCTTCCGGCTCCGCGCGGCATACCCCCTTCAGCCATCGCGATATCTCGTTTCACCCGTACACCATCTAACGACTGACGCa > 1:1148632/1‑237 (MQ=255)
gTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCaaa > 1:175000/1‑239 (MQ=255)
ggCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCtt > 1:461550/1‑239 (MQ=255)
cTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAACCCATCCCCATTCCGGCTCCGCCCGGAATACCCCCCTCCGCCATCGCGAAATCTCGTTTCACCCCTAATCCATTTAACGCCTGCCCCAAATTCTCCA‑CTCtttt > 2:1043659/1‑237 (MQ=255)
cTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTCACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGCATACCCCCTTCAGCCATCGCGATATCTCGTTTCACCCCTAACTCATCTACCGACTGTCGCACATTCTcccccccttt > 1:331476/1‑230 (MQ=255)
cccGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGCTTTCTGTCGCTGGCAACCCAACGAGACAACGTTCTGATTTCCCAGTGGCCCCTACCCATATGACCGCCAACACCCCAGCCGCCGTAGCCCATGCCCATTACGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCCCGTTTCACCCGTAACTCATCTAACGCCTGCCGCAAATTCTCCCTCTCTTTGGcacccg > 2:885165/1‑232 (MQ=255)
cccGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACcccg > 1:1070802/1‑239 (MQ=255)
ttCGTAATTCCGGTTAGGGGCAACCTTTGATTTCTGGCGCTGGACACCCAACGAGAAAACGTTCTGATTTCCCAGTGGCCCATCCCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAAttt < 1:1104878/238‑1 (MQ=255)
ttgcTGTTAGTGGAAACCTCTGTTTTTGGTCGCTGCCACCCCAACGAAAAAACGTTCTGATTTACCAGGGGCCCATCCCCATATGCCCCCCCCCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTa < 1:1312075/236‑1 (MQ=255)
cacaggTTAGTGGCAATCTCTGTTTCCGGTCGCTGGCAACCCAACGATAAACCGTTCTTATTTACCAGTGGCCCATCCCAATATGCCCGCCCCCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCAACCGCGTTAATTTtgctgc < 1:622283/232‑1 (MQ=255)
gTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGTTGCTATCCgg > 1:635480/1‑239 (MQ=255)
aGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGGAGCCCAGGCCCATTCCGGCTCCGCGCGGAATACCCCCTTCCGCCAACGCGATATCCCGTTTCACCCGTAACTCATCTAACGTCTCACGCCCATGCCCCCTCTCTTTTGCGACCCAGTTAATTTtgttgcgaccgggggg > 2:672223/1‑229 (MQ=255)
gCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCCCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGtt > 1:1158439/1‑238 (MQ=255)
cAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTcg > 1:910224/1‑239 (MQ=255)
aCTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCCCGGAATACCCGCCTCAGCCATCCCGATATCTCGTTTCACCCGTACCCCACCTAACGACTGCACCAAATTCTCCATCTCTTTGCCACACGCGTTAATTTTCCTCCTATCCgaggggctgtg > 2:622283/1‑227 (MQ=255)
tgattcgttgcGCCGGCCACCCAACGAGAAAACGTTCTGATTCACCAGTGGCCCATCCCCATATGACCGCCACCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTaa < 1:757472/229‑1 (MQ=255)
tGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCTCGGCTaa > 1:361066/1‑239 (MQ=255)
tGATTTCTGCCGCTGACAACCCAACGAAAAACCTTTCTTATTTCCCGGGGCCCAATCCCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTaa < 1:231515/239‑1 (MQ=255)
ttttGTGTCCCTGGAAACCCAAGGGAAAAACGTTCTGTTTTACCAGTGGCCCATCCCCATAGCACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACa < 1:1043659/238‑1 (MQ=255)
aTTTCGGTCGCGGGCACCCCAAGGAAAAACCTTTCTGATTTCCCAGGGGCCCATCCCCATATGACCGCCCCCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACa < 1:150213/239‑1 (MQ=255)
cTGTCCATGGAACCCCAGCGAAAAACCGTTCTTATTTCCCAGGGCCCCATACCCATATGCCCGCCCCCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGc < 1:1116084/239‑1 (MQ=255)
gTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCCCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTTGCGACCGCGTTACTTTTGCGACTATCCGGGGGGTTCCAGGCTAACAGGGCAt > 2:533641/1‑239 (MQ=255)
ccgcggccAACCAAACGAGAAACCGTTTGGATTACCCAGTGGCCCATCCCCATAGGACCGCCCCCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCAtt < 1:885165/232‑1 (MQ=255)
ccTGGCACCCCAACGAGAAACCTTTCTGATTTCCCAGTGCCCCATCCCCATAGGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGt < 1:292411/238‑1 (MQ=255)
aaCGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATACCTCGTTTCACCCGTAACTCATCTAACACCTGACGCAAATTCCCCACCCCTTTGGGGACCCCGTTATCTTTGCTGCTATCCGGGGGGTTCGCGGCTAATCGGGCATTGTATTCATAAc > 2:1053102/1‑237 (MQ=255)
aCGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCt > 1:590527/1‑85 (MQ=255)
ctcttgttcaCCAGGGGCCCATCCCCATAGGACCGCCACCCGCCCACCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGt < 1:270182/230‑1 (MQ=255)
tCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGtt > 1:1150180/1‑239 (MQ=255)
tACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGGATTCATAACGCTTCGTCACCAGTTGCTGTTg > 1:1167438/1‑239 (MQ=255)
ggTGCCCCATACCCATATGACCGCCACCCCCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGt < 1:1291871/238‑1 (MQ=255)
gTGGCCCATACCCATATGACCGCCACCACCTCAGCAGCCGTAGCCCATGCCCATTCCGGCGCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCCAATTCTCCATCTCTTTTGCGACCGCGTTAATTTTGCTGTTATACGGTGCGTTCGCGGCTACCAGGGCTTTGTATTCATAACGCTTCGTCACCCATTTCTTTTGCAggg > 2:905002/1‑237 (MQ=255)
ggCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATaa > 1:166434/1‑209 (MQ=255)
ggCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGGATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTgc > 1:23296/1‑238 (MQ=255)
ggCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAAACGGGCCTTGTTTTCATAACCCTTCGTCACCATTTCCGGTTgagggggg > 2:1164465/1‑232 (MQ=255)
ggCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCAATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGCAACCAGTTGCTGTTGCACTgc > 1:583732/1‑238 (MQ=255)
gCCCATCCCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTgcg < 1:1109617/238‑1 (MQ=255)
tacccataTGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTGCGCTGCtt > 1:312687/1‑239 (MQ=255)
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GCTGGCATGCGATGGAACAGACCGTGACCACCTGCGAAGGGCAAACCATTAAACCTGATTTAGATTCGCAGGCGATAGCGCATATCGAGCGCCGCCAGAGCCGCTCTTCTGTTGATGTCAGCGTGGCATGGCTGGAAGCGCCCGAAGGTTCGCAATTACTGTTAGTGGCAAACTCTGATTTCTGTCGCTGGCAACCCAACGAGAAAACGTTCTGATTTACCAGTGGCCCATACCCATATGACCGCCACCACCGCAGCCGCCGTAGCCCATGCCCATTCCGGCTCCGCGCGGAATACCCGCTTCAGCCATCGCGATATCTCGTTTCACCCGTAACTCATCTAACGACTGACGCAAATTCTCCATCTCTTTGGCGACCGCGTTAATTTTGCTGCTATCCGGTGGGTTCGCGGCTAACAGGGCATTGTATTCATAACGCTTCGTCACCAGTTGCTGTTGCAGTGCGCTGCTT > NC_000913/4201047‑4201515
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
