Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F110 I1 R1
|
18 |
47.7 |
1781824 |
90.5% |
1612550 |
142.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
3,553,103 |
IS5 (+) +4 bp |
coding (19‑22/2706 nt) |
malT → |
mal regulon transcriptional activator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
2288919 = | NA (NA) | 47 (0.960) |
36/282 |
0.3 |
95.8% |
noncoding (1195/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
3553103 = |
2 (0.040) | coding (19/2706 nt) |
malT |
mal regulon transcriptional activator |
| * |
? |
NC_000913 |
= 2290113 | NA (NA) | 69 (1.420) |
41/280 |
0.2 |
98.5% |
noncoding (1/1195 nt) |
IS5 |
repeat region |
| ? | NC_000913 |
= 3553106 |
1 (0.020) | coding (22/2706 nt) |
malT |
mal regulon transcriptional activator |
CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2289049‑2288919
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGCGG > NC_000913/3553103‑3553244
CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCG > 1:722626/1‑143
TTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGT > 1:20266/1‑143
TAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAACTTCCCCGCTTATTCGCACCTTCCCTGAGTCGaaccgga < 1:620135/143‑8
AATGACGAAGCAACGGTCTAAATAGGCTGATTCAAGGCACCTACGGGAGAAAAAAGCGGCTCAAACATGCCGAAATGAAATGACTGAGCCAGCCGAGAAGAATTTTCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCG < 1:815993/143‑1
TGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCGCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCGCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGAC > 1:793119/1‑143
GGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACT < 1:351136/143‑1
GAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGA < 1:459269/143‑1
GAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCA < 2:567371/143‑1
AACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATA > 1:437553/1‑143
TCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTG < 1:473314/143‑1
AAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGGGGTT > 1:6881/1‑143
AATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTC < 1:410853/143‑1
GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGCCCATCCCGTGGTTCGcggg > 1:394580/1‑139
GCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGCCCATACCGTCGTTCGTGAG > 1:765959/1‑143
AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGGAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTACCTAAGTCGTCCGGTGCGACTCGACCATACCGTGGTTCGCGACCGCCTGCg > 2:433799/1‑142
AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGCGCGCCTGCT > 1:44755/1‑143
AAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTAGCACCTTCCCTAAGTCGTCCGGTTCGACTAGACCATACCGTGGTTCGTGAGCGACTGCT > 2:66887/1‑143
GGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGG < 2:453725/143‑1
GGCAGTTAGGGGACAAAAGATCGGCGCAAACATGAAGAGAGGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCAGACCGTGGTTCGTGAGCGCCTGCTGG < 2:613624/143‑1
TTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGACTTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGCTTCGACTCGACCATCCCCGCGTTCGTGAGCGCGCGCTGGCTAA > 2:872533/1‑143
GGGAGAAACAGTCGGCGCACACATGAAGAAAGGAAATGGCTGAGTCAGCCGAGAAGATTTTCCCCGCTTATTCGCACCTCCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAACCTTT < 1:134798/143‑1
AGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTCTTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCG > 2:152492/1‑143
GCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAAC > 1:492146/1‑143
TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAGCTT > 1:749340/1‑143
TCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAAata > 2:384333/1‑140
CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGGCCAACTTC > 1:111950/1‑143
CAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTC > 2:177743/1‑143
ATGAAGAAATGAAATGACTGAGTCAGCCGACCAGAATTACCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAGCTTTCCGGCGCGGACGACTTCCGGCg > 1:698730/1‑142
AAATGACTGAGTCAGCCGAGAAGAATTGCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTGCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCA < 1:522226/143‑1
TGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGA < 2:20266/143‑1
TGACTGAGGCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGA < 1:618735/143‑1
ACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGT < 2:646886/143‑1
CTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTACACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCcagaggc > 1:819663/1‑136
tAGAAGTATTGCCTTGCTTATTCGTATCTTCCCTAAGTCGTACGGTTCGACTCGA‑CATACCGTGGTTCGTGAGCGCCTGCTTGCTAAACTTTCCGGCGTGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACG < 2:224015/142‑1
AAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTACACTTTCCGGCGCGCACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCCGCCTACGGA > 2:208265/1‑143
AAGAATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGA > 1:391694/1‑143
tatgTCCCCGCTTCTTCGCCCCTGCCCCAAGTCGTCCGGTTCTACTCGACCATCCCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAG < 2:873866/139‑1
AATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAG < 2:437553/143‑1
AATTTCCCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGCGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCCACGGAAAG > 2:14098/1‑143
CCCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGCTCGTGAGCGCCTGCTGGCTAAACTTTCCGCCGCGAACACCTTCCGGCTGGCGCTGATCACGACTCCTGGGGGCTACGGACAGACCcca > 2:1750/1‑140
CCGCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGACCAACTTCCGGCTGGCGCCGATCACGAGTCCTGCGGGCTACAGAAAGACaaacc > 1:226494/1‑138
CGCTTATTCGCACCTTCCCTAAGTCGTCCGTGTCGACTCTGCCATACCGTGGTGCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCCGCGGGCTACGGAAAGACCACCCT > 1:416231/1‑143
GCTTATTCGCACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCGGCGGGCTACGGAAAGACCACCCTC > 2:687146/1‑143
CTTATTCGCACCTTCCCTAAGTCGCCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCA < 1:830941/143‑1
CACCTTCCCTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAG > 2:501380/1‑143
ACCTTCCCTAAGTCGTCCGTTGCGACGTGTCTATACCGTGCTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGT < 2:157947/143‑1
CCTAAGTCGTCCGGTTCGACTCGACCATACTGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGCGCTACGGCAAGACCACCCTCACTCCCCCGCGGGCcg > 2:106930/1‑141
CCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2289049‑2288919
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAAGTCGTCCGGTTCGACTCGACCATACCGTGGTTCGTGAGCGCCTGCTGGCTAAACTTTCCGGCGCGAACAACTTCCGGCTGGCGCTGATCACGAGTCCTGCGGGCTACGGAAAGACCACCCTCATTTCCCAGTGGGCGG > NC_000913/3553103‑3553244
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
