Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F110 I1 R1
|
16 |
43.2 |
1568152 |
90.1% |
1412904 |
142.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
1,937,136 |
IS2 (–) +5 bp |
coding (485‑489/870 nt) |
yebK → |
putative DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 1651548 | NA (NA) | 48 (1.120) |
42/284 |
0.1 |
100% |
noncoding (706/706 nt) |
IS2 |
repeat region |
| ? | NC_000913 |
= 1937140 |
0 (0.000) | coding (489/870 nt) |
yebK |
putative DNA‑binding transcriptional regulator |
| * |
? |
NC_000913 |
1937136 = | 0 (0.000) | 59 (1.380) |
50/284 |
0.0 |
100% |
coding (485/870 nt) |
yebK |
putative DNA‑binding transcriptional regulator |
| ? | NC_000913 |
= 2070271 |
NA (NA) | noncoding (1/1331 nt) |
IS2 |
repeat region |
CCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1651408‑1651548
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT < NC_000913/1937140‑1937003
ccgTGCAGGGGCGTTCGAGCATTAGAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGg < 1:544291/140‑2
agagcaGTTCAAGCAGTAAGACCAATAGCATCCGCATAGTGCGCTGGGTTATTGCTCGCTACGGGAATATCTGCGGCAGCGGGCTTGTAAGGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAT < 1:214557/137‑1
AGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAT < 1:710732/143‑1
AGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCG < 2:610191/143‑1
GCGTTCGGGGGTTGTGACGAGTGGCATGCGCACAGTGCGCGGGGTTATCGCCCGCCACGGGAAGATCTGCGGCAGCGGGGTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGA < 2:292802/143‑1
GTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGATAAAGAGGGGCAAATCCAGATATCCTCGGAGT > 2:585722/1‑143
TTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTA > 1:98360/1‑143
TCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTAC > 1:467353/1‑143
TATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGG > 2:552011/1‑143
TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAA < 1:46907/143‑1
GGCATCCTCCTAGCGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCTGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAA < 2:139723/143‑1
ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAACTCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGA < 2:671036/143‑1
ATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGA > 2:411597/1‑143
CCGCATACTGCGCTGGGTTATCGCTCCCCACGGGAATATCTGCGGCACCGGGCTTCTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA < 1:765861/143‑1
CCGCACAGTGCGCTGGGTCATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA < 1:51767/143‑1
cacAGTGCGCTGCTTTCACCCTCGCCACCGTCATATCTGCGGCCGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGCAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCTGAACATTAAAACGAAAGAA < 2:715590/140‑1
ATAGTGCGCTGGGTTATCGCTGGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCAGCGGAGTACACCACCGGAACATTAAAACGAAAGAAC < 2:266458/143‑1
AGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTT > 1:570931/1‑143
TCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGg > 1:448159/1‑142
CTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACNCCACCGGAACATAAAAACGAAAGAGCTCAACCATCGCATCGTGGG > 2:268568/1‑143
GCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAGATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAAGTTATTCATCGCATCGTGGGGAA > 1:287124/1‑143
CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGACAGAACTTATTCATCGCATCGTGGGCAACG > 1:515387/1‑143
CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACG < 1:441106/143‑1
GGGAATATCTGCGGCAGCGGTCTTGTAATGGGTTAAGGGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCG < 2:429020/143‑1
GGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAGCATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGG < 1:410481/143‑1
GGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGCAAGCACTTATTCATCGCATCGTGGGCAACGGCGG < 2:683900/143‑1
GGAATATCGGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGG < 2:343839/143‑1
agCTGCGGCAGCTGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAA < 2:528428/141‑1
TCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAG > 2:118099/1‑143
CTGCGGCATCGGGTCTGTAAGTTATTAAGTGATAACAGCTGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA < 2:599527/143‑1
CTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA > 2:152152/1‑143
CGGCAGCGGGCTTGGAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCC < 1:581143/143‑1
GCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGCGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATC < 1:409040/143‑1
CTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGGAGAGCCTAATCCGAAA > 2:84083/1‑143
TGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAA < 1:411597/143‑1
aTAATGGGTTAAGTGAAAACAGATGTCTGGAAATATAGGAGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAG < 1:107718/142‑1
GGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGGTT > 1:454064/1‑143
ggGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTT < 1:220573/141‑1
GTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAACAAGGCGATTTTTTTT > 2:429740/1‑143
ATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGAAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGGCTAATCCGAAAAAGGCGATTTTTTTTGCC > 2:693189/1‑143
TAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGCTTTTTTTTtcat > 2:259741/1‑139
TAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTCTTACGCCT > 2:783321/1‑143
ATGTCTCGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCTAAAAAGGCGATTTTTTTTGCCTGAGTGA < 2:65020/143‑1
CTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAACACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGGGAGCAA > 1:110893/1‑143
AGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCG > 2:108665/1‑143
GGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGATGGCGCG > 1:780837/1‑143
GGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCGGAGTGAGCGAGTCGGCGGgcccg > 1:121942/1‑138
ATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT < 1:458238/143‑1
CCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1651408‑1651548
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGAT < NC_000913/1937140‑1937003
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
