Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F110 I2 R1
|
16 |
53.0 |
1914758 |
91.2% |
1746259 |
142.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
NC_000913 |
1,937,136 |
IS2 (–) +5 bp |
coding (485‑489/870 nt) |
yebK → |
putative DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 1651548 | NA (NA) | 51 (0.960) |
42/284 |
0.2 |
98.0% |
noncoding (706/706 nt) |
IS2 |
repeat region |
| ? | NC_000913 |
= 1937140 |
1 (0.020) | coding (489/870 nt) |
yebK |
putative DNA‑binding transcriptional regulator |
| * |
? |
NC_000913 |
1937136 = | 1 (0.020) | 59 (1.110) |
44/284 |
0.2 |
98.3% |
coding (485/870 nt) |
yebK |
putative DNA‑binding transcriptional regulator |
| ? | NC_000913 |
= 2070271 |
NA (NA) | noncoding (1/1331 nt) |
IS2 |
repeat region |
ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1651407‑1651548
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGATGG < NC_000913/1937140‑1937001
ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAG < 1:773203/143‑1
ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAG < 1:210738/143‑1
ACCCTGCAGAGGCGTTCGAGCATGATAACGCATCGCATCCGCATAGTGCGCTGGGTGATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGGTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAG < 1:326957/143‑1
TTGCAGAGGCGTTCGAGCATTATAACAAAAGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGCATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATACCAGATGTCTGGAAATATAGGGGCAAATCCAGATA > 2:341974/1‑143
GCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGA < 2:954751/143‑1
CGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACA > 2:508523/1‑143
GAGCATTATAACGAATGGCGTCCGCATAGCGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGCAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACAC < 2:69442/143‑1
TAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCCGGAAATCTAGGGGCAAATCCCGATATCATCGGAGCACACCCCGGGAA > 1:906510/1‑143
gACGGATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAAC < 2:423072/142‑1
GCACCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAAC < 1:166256/143‑1
TCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAA < 2:895708/143‑1
cctggtgGTGCTCTGGGTCAGCGCACGCTTCGTGTATAGCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA < 2:147298/136‑1
CCGCATGGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAA < 2:399713/143‑1
CATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAAAATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAA > 1:355297/1‑143
ATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCACATCCAGATATCATCGGAGTACACCACCGGAACCTTAAACCGCAAGGAC > 2:361164/1‑143
AGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTT < 1:194657/143‑1
GTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTA < 1:804963/143‑1
TGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGCAATATCGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAAGATGAAAACGAAAGAGCTTtt > 1:252821/1‑141
TTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAAAATTAAAACGAAAGAGCATATGCATCGCAc > 1:126597/1‑142
TCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAAATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATCAAAAGGAAAGAACTAAGTCATCGCAGCGg > 2:31455/1‑142
GCTGGCCACGGGAATCCATGAGGTTGCGGGCTTGTAATGGGTTAAGTGATCACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGG < 2:710980/143‑1
ACGGGAAGATCTGCGGCAGCTGGCTTGGAGTGGGTTAGGTGATAGCAGGTGTCTGGAAATATAGGGGCAAAGCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGG < 1:172970/143‑1
GGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCGCCGGAATATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCG > 2:877292/1‑143
TCTGCGGCAGCGGGCTCGTAATGGGTTAAGCGATAACAGATGTCTGGAAATACAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAG < 1:1297/143‑1
CTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA < 1:290376/143‑1
CTGCGGCAGCGGGCTCACAATGGGTTAAGTGATAACAGAAGTCAAGAAATAGAGTGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGA < 1:903447/143‑1
GCGGCAGCGGGGGTGTAATGGGTTAAGTGATAACAGATGTCTGGAAAGATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTAGTCATCGCATCGTGGGCAACGGCGGCTGAAGAGC < 1:403677/143‑1
GCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACACTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGg > 2:741097/1‑142
AGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAAT > 1:683574/1‑143
AGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAAT > 1:776242/1‑143
GTAATGAGTTAAGTGATAAGAGATGTCTGGAAACATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAG < 1:113027/143‑1
AATGGGTTAAGGGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCTGAACATTGAAACGCAAGAACTTTTTCATCGCATCGTGGGTAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGC < 1:778395/143‑1
TGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGA > 1:540682/1‑143
TGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGT > 2:347498/1‑104
TGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGT < 1:347498/104‑1
AAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTT < 1:317383/143‑1
ggGATAACTGACGTCCGCAACTACAGGCGCAAATCCAGATACCATCGGAGCACACCACCGGAACATTAAAACGAAAGAACTTATTCCTCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTT < 2:322301/141‑1
GTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGACTACACCACCGGAACATTAAAACGAAAGAACTTATTCAGCGCATCGTGGGCAACGGCGGCTGAAGACCCCAACCCGACAACGCCGCTTCTTTTT > 1:853010/1‑143
TGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGACAAAGGCGGTGTTTTTTG > 2:449211/1‑143
AACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTG > 1:591527/1‑143
AACAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGAGTTTTTTTGCCTG > 2:438317/1‑143
CAGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAG > 1:269354/1‑143
AGATGTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGT < 1:508523/143‑1
GTCTGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGC < 2:294835/143‑1
TGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAG > 2:612577/1‑143
TGGAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAG < 1:23836/143‑1
GAAATATAGGGGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTC < 1:654654/143‑1
GAAATATAGGGGCAAATCCAGATATCACCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCGTCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTC < 1:220965/143‑1
ATATAGGGGCAAAGCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGAC < 2:252821/143‑1
GGCAAATCCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTACTCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGG < 1:457198/143‑1
CCAGATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTTCCTGAGTGGGCAAGTCGACGGCCCGGTTGCTGG > 1:154750/1‑143
ACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1651407‑1651548
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATATCATCGGAGTACACCACCGGAACATTAAAACGAAAGAACTTATTCATCGCATCGTGGGCAACGGCGGCTGAAGAGCCTAATCCGAAAAAGGCGATTTTTTTTGCCTGAGTGAGCAAGTCGACGGCGCGGTTGATGG < NC_000913/1937140‑1937001
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
