Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F13 I1 R1 28 131.7 2840326 93.9% 2667066 219.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_007779_cfb 2,320,795 Δ1,336 bp insD_9–insC_5 insD_9, insC_5

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779_cfb 2320795 2322130 1336 141 [0] [0] 141 insD_9–insC_5 insD_9,insC_5

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779_cfb = 23207940 (0.000)137 (1.130) 112/424 0.1 100% intergenic (+633/+11) rcsB/insD_9 DNA‑binding response regulator in two‑componentregulatory system with RcsC and YojN/IS2 element protein
?NC_007779_cfb 2322131 = 0 (0.000)intergenic (‑98/‑2582) insC_5/atoS IS2 element protein/sensory histidine kinase in two‑componentregulatory system with AtoC

GATK/CNVnator alignment

N/A