Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A71 F2000 I2 R1
|
33 |
144.3 |
3157378 |
93.5% |
2952148 |
216.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_007779_cfb |
2,320,795 |
Δ1,336 bp |
|
insD_9–insC_5 |
insD_9, insC_5 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_007779_cfb |
2320795–2322123 |
2322130 |
8–1336 |
134 [0] |
[0] 135 |
insD_9–insC_5 |
insD_9,insC_5 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_007779_cfb |
= 2320794 | 0 (0.000) | 125 (0.950) |
106/418 |
0.3 |
100% |
intergenic (+633/+11) |
rcsB/insD_9 |
DNA‑binding response regulator in two‑componentregulatory system with RcsC and YojN/IS2 element protein |
| ? | NC_007779_cfb |
2322131 = |
0 (0.000) | intergenic (‑98/‑2582) |
insC_5/atoS |
IS2 element protein/sensory histidine kinase in two‑componentregulatory system with AtoC |
GATK/CNVnator alignment
N/A
