Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A69 F2000 I3 R1
|
36 |
84.1 |
1889666 |
90.2% |
1704478 |
220.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_007779_cfb |
654,214 |
Δ1,199 bp |
|
insH_12 |
insH_12 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_007779_cfb |
654214–655406 |
655412 |
7–1199 |
96 [0] |
[0] 96 |
insH_12 |
insH_12 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_007779_cfb |
= 654213 | 0 (0.000) | 96 (1.230) |
88/428 |
0.0 |
100% |
intergenic (+448/‑68) |
dpiA/insH_12 |
DNA‑binding response regulator in two‑componentregulatory system with citA/IS5 element protein |
| ? | NC_007779_cfb |
655413 = |
0 (0.000) | intergenic (+152/‑1566) |
insH_12/pagP |
IS5 element protein/palmitoyl transferase for Lipid A |
GATK/CNVnator alignment
N/A
