Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F8 I1 R1 25 114.0 2452592 94.1% 2307889 219.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_007779_cfb 654,214 Δ1,199 bp insH_12 insH_12

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_007779_cfb 654214–655406 655412 7–1199 111 [0] [0] 111 insH_12 insH_12

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_007779_cfb = 6542130 (0.000)108 (1.020) 87/426 0.3 100% intergenic (+448/‑68) dpiA/insH_12 DNA‑binding response regulator in two‑componentregulatory system with citA/IS5 element protein
?NC_007779_cfb 655413 = 0 (0.000)intergenic (+152/‑1566) insH_12/pagP IS5 element protein/palmitoyl transferase for Lipid A

GATK/CNVnator alignment

N/A