Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A94 F2000 I2 R1
|
42 |
124.0 |
2700938 |
94.0% |
2538881 |
216.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_007779_cfb |
654,214 |
Δ1,199 bp |
|
insH_12 |
insH_12 |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_007779_cfb |
654214 |
655412 |
1199 |
124 [0] |
[0] 124 |
insH_12 |
insH_12 |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_007779_cfb |
= 654213 | 0 (0.000) | 124 (1.080) |
112/422 |
0.1 |
100% |
intergenic (+448/‑68) |
dpiA/insH_12 |
DNA‑binding response regulator in two‑componentregulatory system with citA/IS5 element protein |
| ? | NC_007779_cfb |
655413 = |
0 (0.000) | intergenic (+152/‑1566) |
insH_12/pagP |
IS5 element protein/palmitoyl transferase for Lipid A |
GATK/CNVnator alignment
N/A
