Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F999 I1 R1
|
225 |
156.4 |
11709729 |
83.8% |
9812752 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,255,616 |
Δ1 bp |
intergenic (‑19/+312) |
yhaO ← / ← yhaP |
putative transport system permease protein/putative L‑serine dehydratase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,255,615 | 0 | G | . | 97.8%
| 399.5
/ 1.2
| 93 | intergenic (‑18/+313) | yhaO/yhaP | putative transport system permease protein/putative L‑serine dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (0/2); new base . (42/48); total (43/50) |
| Fisher's exact test for biased strand distribution p-value = 4.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTA > NC_000913/3255539‑3255683
|
gtgtCAGTACTGTCGAATTTGATCGCTTCTCACCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAg < 1:1596466/76‑1 (MQ=255)
tgtCAGTCCTGTCGAATTTGACCGCTTCTCTCCACTCGCGCTCGCTCATTCCA‑GCACGCCCCGCCGGGGTCGAAgc < 1:485840/76‑2 (MQ=255)
gtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcg > 1:4940898/1‑74 (MQ=255)
gtCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAAgcg > 1:3726105/1‑74 (MQ=255)
cattACAGTCGAAGTGGAACACCTCCCGCCGCTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCG‑AGGCGTc < 1:487869/73‑1 (MQ=255)
aGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCt > 2:2961639/1‑76 (MQ=255)
aGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCt > 1:3110281/1‑76 (MQ=255)
aGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCt > 1:4319161/1‑76 (MQ=255)
gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTg > 1:1247932/1‑76 (MQ=255)
gTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTg < 1:4986068/76‑1 (MQ=255)
tACTGTCGATTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGc < 1:2199397/76‑1 (MQ=255)
aCTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCa < 1:5592475/76‑1 (MQ=255)
tctCGAGTGTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAAt < 2:355273/74‑1 (MQ=255)
tGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAAt > 2:1081212/1‑76 (MQ=255)
tGTCGAATTTGACCGCTTCTCGCCTGTCGGTCTCACTCATTCCA‑GCGCGGCCCGCCTGGGTCGAA‑GCGTCTGCAAt < 2:353943/76‑1 (MQ=255)
gTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATg > 1:3547386/1‑76 (MQ=255)
gTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCG‑ACGCGTCTGCAATg > 2:269561/1‑76 (MQ=255)
tCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGa < 2:589153/76‑1 (MQ=255)
tCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGa > 1:2530645/1‑76 (MQ=255)
cGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGAc < 1:63218/76‑1 (MQ=255)
gAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCGCGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACg < 2:5760498/76‑1 (MQ=255)
actttGATCGCTTCTCGCATCTCGCTCTCACTCCTTCCA‑GCACGATACGGCGGGTTCTAA‑GCGTCTGCAATGACGc < 1:3924460/74‑1 (MQ=255)
aaTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGc < 1:3899594/76‑1 (MQ=255)
aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGcc > 2:631749/1‑76 (MQ=255)
aTTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGcc > 2:2756824/1‑76 (MQ=255)
tGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCttt < 1:2861899/76‑1 (MQ=255)
tGATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCttt < 1:4772403/76‑1 (MQ=255)
gagcGCTTCGCGCCACTCGCTCTCACTCATTCCA‑GCACGCCCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa < 2:5263021/73‑1 (MQ=255)
gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa > 2:3398796/1‑76 (MQ=255)
gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa > 2:1066736/1‑76 (MQ=255)
gATCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa > 1:1378449/1‑76 (MQ=255)
gATCCCTCCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTa < 2:1084957/76‑1 (MQ=255)
aTCGCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTAt > 2:2170896/1‑76 (MQ=255)
gCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCg > 2:4883370/1‑76 (MQ=255)
gCTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCg > 2:1098627/1‑76 (MQ=255)
cTTCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGa > 1:2776116/1‑76 (MQ=255)
ttCTCGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGAt > 1:3979067/1‑76 (MQ=255)
tctcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATg < 2:4331413/76‑1 (MQ=255)
tcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGCTGCa > 1:3746763/1‑76 (MQ=255)
tcGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCa < 2:2005729/76‑1 (MQ=255)
tcGCCACTCGCTCCCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCa > 2:4249379/1‑76 (MQ=255)
cGCCACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCaa < 1:1219680/76‑1 (MQ=255)
ccACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAtt > 1:995031/1‑76 (MQ=255)
cACTCGCTCTCACTCATTCCA‑GCACGCCCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt < 2:3355933/76‑1 (MQ=255)
cACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt < 1:3381408/76‑1 (MQ=255)
cACTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAAttt > 2:1933776/1‑76 (MQ=255)
ccTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc < 1:1066736/75‑1 (MQ=255)
ccTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc < 1:657383/75‑1 (MQ=255)
ccTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTc < 1:828991/75‑1 (MQ=255)
cTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTcc > 1:5617110/1‑76 (MQ=255)
cTCGCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTcc > 1:1293475/1‑76 (MQ=255)
gCTCTCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATa > 1:1796056/1‑76 (MQ=255)
ctctCCCTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa < 2:5404519/76‑1 (MQ=255)
ctctCACTCATTCCA‑GCGCGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa < 1:1817326/76‑1 (MQ=255)
ctctCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa > 1:3018608/1‑76 (MQ=255)
ctctCACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa < 1:5370791/76‑1 (MQ=255)
tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAt > 1:4150499/1‑76 (MQ=255)
tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAt < 1:3334806/76‑1 (MQ=255)
tctcACTCATTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCAATGCAATTTCCATAAt > 2:4919626/1‑76 (MQ=255)
ctcacccaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAtt > 1:4580703/1‑76 (MQ=255)
tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCCTAAttt > 2:469718/1‑76 (MQ=255)
tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAttt > 2:2112486/1‑76 (MQ=255)
tcactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAAttt < 2:2530645/76‑1 (MQ=255)
cactcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtc > 1:3306062/1‑76 (MQ=255)
actcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtct < 2:3892989/76‑1 (MQ=255)
ctcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtctc < 2:180271/76‑1 (MQ=255)
ctcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCCGCAATGACGCCTTTATTCGATGCAATTTCCATAATTtctc < 1:2803/76‑1 (MQ=255)
tcaTTCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCg < 1:643058/76‑1 (MQ=255)
caTTCCA‑GCACGACCCGCGGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGc < 1:2683082/76‑1 (MQ=255)
ttCCA‑GCACGACGCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTc < 2:2919868/76‑1 (MQ=255)
ttCCA‑GCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCCTTATTCGATGCAATTTCCATAATTTCTCCCTc > 2:5477760/1‑76 (MQ=255)
ccagCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCaa < 1:5373632/73‑1 (MQ=255)
agCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAata > 1:2525371/2‑76 (MQ=255)
agCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAata < 2:4315114/75‑1 (MQ=255)
gCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAatat < 1:5645730/76‑1 (MQ=255)
gCACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAatat > 2:1675352/1‑76 (MQ=255)
cACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtt < 1:628422/76‑1 (MQ=255)
cACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtt < 2:3619956/76‑1 (MQ=255)
cACGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATAtt < 2:3726105/76‑1 (MQ=255)
aCGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa > 1:1796047/1‑59 (MQ=255)
aCGACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATaa < 2:1796047/59‑1 (MQ=255)
gACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg < 1:580357/76‑1 (MQ=255)
gACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg > 2:562236/1‑76 (MQ=255)
gACCCGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTg < 2:1795220/76‑1 (MQ=255)
cccGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTa < 2:3777147/76‑1 (MQ=255)
cccGCCGGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTa > 2:2756463/1‑76 (MQ=255)
ccgccgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAg < 2:527941/76‑1 (MQ=255)
cgccgGGGTTGCA‑GCGTCTGCAATGACGCGTTTATTCGATGCAATTTCCATAATTTTTCGCTCAATATTTTGTAgg < 2:2573937/76‑1 (MQ=255)
gccgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAggg > 2:523708/1‑76 (MQ=255)
ccgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGc < 1:3549037/76‑1 (MQ=255)
cgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCt > 2:2415694/1‑76 (MQ=255)
cgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCt > 2:1181858/1‑76 (MQ=255)
cgGGGTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCt < 1:3104072/76‑1 (MQ=255)
ggggTGGAAGG‑GTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCtt < 2:144697/76‑1 (MQ=255)
ggggTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCtt > 1:1732614/1‑76 (MQ=255)
ggggTCGAA‑GCGTCTGAAATGACGCCTTTATTCGATGCAATTTCCATAAGTTCTCGCTCTATATTTTGTAGGGcgt > 1:3661789/1‑74 (MQ=255)
gggTCGAA‑GCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCtta < 2:4236071/76‑1 (MQ=255)
|
GTGTCAGTACTGTCGAATTTGATCGCTTCTCGCCACTCGCTCTCACTCATTCCAGGCACGACCCGCCGGGGTCGAAGGCGTCTGCAATGACGCCTTTATTCGATGCAATTTCCATAATTTCTCGCTCAATATTTTGTAGGGCTTA > NC_000913/3255539‑3255683
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
