Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F999 I1 R1 225 156.4 11709729 83.8% 9812752 75.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,418,840 +G coding (1070/1089 nt) b3269 → putative transport system permease protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,418,8371.G94.8% 297.6 / 10.8 117coding (1067/1089 nt)b3269putative transport system permease protein
Reads supporting (aligned to +/- strand):  ref base . (2/4);  new base G (58/52);  total (60/57)
Fisher's exact test for biased strand distribution p-value = 4.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 140 total aligned reads displayed.

AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑GG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC  >  NC_000913/3418762‑3418907
                                                                              |                                                                        
aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTTCTGCATCA‑GA‑c                                                                           >  2:4073952/1‑76 (MQ=255)
 aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTTCCGGCACCGTGCTGGATCA‑GA‑C‑g                                                                         >  1:2341446/1‑76 (MQ=255)
 aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGGATCA‑GA‑C‑g                                                                         <  1:5557365/76‑1 (MQ=255)
  acctcttcTCTCGCCGCCGCTATTTGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑gg                                                                        <  1:2491240/74‑1 (MQ=255)
  aaCTCCCCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑gg                                                                        <  1:4284034/76‑1 (MQ=255)
   acccctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑gg‑g                                                                      <  2:4827971/73‑1 (MQ=255)
   acccctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑gg‑g                                                                      <  2:3711870/73‑1 (MQ=255)
   aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCTATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCA‑GA‑C‑gg‑g                                                                      <  1:4054285/76‑1 (MQ=255)
    ctcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑gg‑gg                                                                     <  1:2069480/76‑2 (MQ=255)
    ctcctcTCTTGCCGCCGCTATTGGCTATACCGATATGGTTTCGCTGTTTGCCCGCACCGTGCTCAATCA‑GA‑C‑ag‑gg                                                                     >  2:4277726/1‑75 (MQ=255)
    cccctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑gg‑gg                                                                     <  2:3867461/74‑2 (MQ=255)
     tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATTGGTTCTCTGTTTTCCGGCACCGTGCTTAATAA‑GA‑C‑gg‑ggc                                                                    >  1:3080227/1‑74 (MQ=255)
     tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑gg‑ggc                                                                    >  1:933305/1‑74 (MQ=255)
            ttGTCGCCGCTTTGGGCACTCCGGTTTTGGTTTGGTTGTTAGCCGGGACCGTGCTGAATCA‑TA‑CGGG‑GCA‑AGCCAt                                                             <  1:625782/76‑1 (MQ=255)
            ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTCATTGGCGGCCACCTGCTGAATCA‑GA‑C‑GGCGCA‑AGcacg                                                             >  2:2606880/1‑73 (MQ=255)
             tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATc                                                            >  1:4680320/1‑76 (MQ=255)
             tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATc                                                            <  1:3801483/76‑1 (MQ=255)
              gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCg                                                           >  1:4780028/1‑76 (MQ=255)
              gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCg                                                           <  2:2424167/76‑1 (MQ=255)
              gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGCGCTGAATCA‑GA‑CGGG‑GCA‑AGCCAGCg                                                           >  1:5079850/1‑76 (MQ=255)
                 gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTTCCGGCCCCGCGCTGAATCA‑GA‑CGGG‑GCA‑AGCCACCgaga                                                        >  2:5019738/1‑76 (MQ=255)
                 gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GGA‑AGCCATCgaga                                                        >  1:1971621/1‑76 (MQ=255)
                 gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCC‑AGCCATCgcgc                                                        >  2:5387131/1‑73 (MQ=255)
                 gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCgaga                                                        <  1:510065/76‑1 (MQ=255)
                 gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCAGCgaga                                                        >  1:5292338/1‑76 (MQ=255)
                  ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGAc                                                       >  1:1650450/1‑76 (MQ=255)
                   cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACg                                                      >  1:5271264/1‑76 (MQ=255)
                      tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATa                                                   >  2:2120518/1‑76 (MQ=255)
                        ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCTATCGAGACGATAGc                                                 >  2:3958565/1‑76 (MQ=255)
                         tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGcc                                                >  1:3641096/1‑76 (MQ=255)
                          ggCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCACCGCGACGATAAccc                                               >  2:1071121/1‑75 (MQ=255)
                           gatATCCCGATGTGGTTTCGCTGTTTGCCGCCTCCGTGCGGAATCA‑GA‑CGGG‑GCA‑GGCCATCGAGACGATAGCCAt                                              <  2:2593065/74‑1 (MQ=255)
                           gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCac                                              >  2:5060883/1‑75 (MQ=255)
                           gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCAt                                              >  1:5165117/1‑76 (MQ=255)
                           gCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCAt                                              >  1:1070961/1‑76 (MQ=255)
                            ctgtCCCGATATGGTTTCGCTGTTGGCCGGCACGGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATg                                             <  2:1085883/73‑1 (MQ=255)
                             tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGa                                            >  1:4265972/1‑76 (MQ=255)
                               tCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGAcc                                          <  1:303156/76‑1 (MQ=255)
                               tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCCTGAcc                                          >  2:5158915/1‑76 (MQ=255)
                               tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGAcc                                          >  2:4170172/1‑76 (MQ=255)
                               tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGAcc                                          <  2:1070961/76‑1 (MQ=255)
                                cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCa                                         <  1:3175731/76‑1 (MQ=255)
                                  cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATg                                       >  1:3996125/1‑76 (MQ=255)
                                  agATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑AGGG‑GCA‑AGACATCGAGACGATAGCCACGCCCATg                                       >  2:4513627/2‑76 (MQ=255)
                                   gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGt                                      <  1:4203766/76‑1 (MQ=255)
                                     tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCg                                    >  1:4615837/1‑76 (MQ=255)
                                     tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCg                                    >  1:1335641/1‑76 (MQ=255)
                                     tatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCg                                    <  2:5165116/76‑1 (MQ=255)
                                      atGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCgg                                   >  1:2941039/1‑76 (MQ=255)
                                      atGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCgg                                   >  2:5374545/1‑76 (MQ=255)
                                       tGGTTTCGTTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGt                                  <  1:2802536/76‑1 (MQ=255)
                                        ggTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCCTGCCgggc                                 >  2:5747526/1‑74 (MQ=255)
                                          tttCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTa                               <  1:2120518/76‑1 (MQ=255)
                                          tttCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTa                               >  2:2058987/1‑76 (MQ=255)
                                           ttCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTAt                              <  1:4769262/76‑1 (MQ=255)
                                            tCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc                             <  2:4643429/76‑1 (MQ=255)
                                            tCGCTGTTGGCCGGCCCCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATc                             <  2:2041971/76‑1 (MQ=255)
                                             cGCTGTTTGCCGGCCCCGGGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt                            <  1:443624/76‑1 (MQ=255)
                                             cGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt                            <  1:4665102/76‑1 (MQ=255)
                                              gCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGCTAGCCATGACCATGTCGGTCTCTCTg                           >  2:1193206/1‑76 (MQ=255)
                                              gCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTg                           <  1:3413356/76‑1 (MQ=255)
                                               cTGTTTGCCGGCACCGTGCTGAATCG‑AA‑CGGG‑GAA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa                          <  1:2887596/76‑1 (MQ=255)
                                                tGTTTGCGGGCGCCGTGCTGAATCAGGG‑G‑GG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                         <  2:613360/76‑1 (MQ=255)
                                                tGTTTGCCGGCACGGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                         <  1:2338267/76‑1 (MQ=255)
                                                tGTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                         >  1:4850278/1‑76 (MQ=255)
                                                tGTTGGCGGGCCCCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                         <  2:1479310/76‑1 (MQ=255)
                                                ggTTTGCGGGGACGGTGGTGAATCA‑GA‑CGGG‑GCA‑CGCGATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt                         <  2:865675/75‑1 (MQ=255)
                                                 gTTTGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt                        >  1:780100/1‑76 (MQ=255)
                                                  tttGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTa                       <  1:2824831/76‑1 (MQ=255)
                                                  tttGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTa                       <  1:5379399/76‑1 (MQ=255)
                                                   ttGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAt                      >  1:2707873/1‑76 (MQ=255)
                                                   ttGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAt                      <  1:2392438/76‑1 (MQ=255)
                                                   ttGCCGCCACCGGGCTGAATCA‑GC‑CGGG‑GAA‑AGCAATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAt                      <  1:4073953/76‑1 (MQ=255)
                                                    tGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc                     >  1:5602399/1‑76 (MQ=255)
                                                    tGCCGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc                     <  1:3312627/76‑1 (MQ=255)
                                                     gCCGGCCCCGTGGTGAACCA‑GAGG‑GG‑GCA‑AGCAATCGGGAAGATAGCCATGACCATGTCGGGCTATCTGATTATCa                    <  2:2491691/76‑1 (MQ=255)
                                                     gCCGGCCCCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTAtaa                    <  2:3474288/76‑3 (MQ=255)
                                                     gCCGGCCCCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa                    <  2:2459130/76‑1 (MQ=255)
                                                      ccGGCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg                   <  1:1596336/76‑1 (MQ=255)
                                                         gCACCGTGGTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                <  2:5677932/76‑1 (MQ=255)
                                                         gCACCGTGCTGAATCA‑GC‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                <  1:3167163/76‑1 (MQ=255)
                                                         gCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                >  1:2553741/1‑76 (MQ=255)
                                                         gCACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCt                <  1:3859855/76‑1 (MQ=255)
                                                          cACCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTg               <  1:5447188/76‑1 (MQ=255)
                                                           aCCGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTgc              >  2:661402/1‑75 (MQ=255)
                                                            ccGTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCACCCTGAc             >  2:2965920/1‑76 (MQ=255)
                                                            cagTGCTGAACCA‑GC‑CAGG‑ACA‑AGCCACCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGAc             <  1:362390/74‑1 (MQ=255)
                                                              gTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTa           <  1:4033039/76‑1 (MQ=255)
                                                              gTGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCCATCTGATTATCAGCCTGAcct           >  2:2135414/1‑74 (MQ=255)
                                                               tGCTGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt          >  1:2766504/1‑76 (MQ=255)
                                                                gCTGAATCA‑GA‑CGGG‑GCA‑AGCCATAGAGACGAGAGCCATGACCATGTCGGTCTATCTGATTATCAGCCCGACTAtc         >  1:835707/1‑76 (MQ=255)
                                                                 cTGAATCA‑GA‑GGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct        <  1:657361/76‑1 (MQ=255)
                                                                  tGAATCA‑GG‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtctc       <  2:4188355/76‑1 (MQ=255)
                                                                  tGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtctc       >  1:616927/1‑76 (MQ=255)
                                                                  tGAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGGCTATCTGATTATCAGCCTGACTAtctc       >  1:5080429/1‑76 (MQ=255)
                                                                  tGAACCA‑GA‑C‑GG‑GGAGAGCAATCAGGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtctc       <  1:1193206/76‑1 (MQ=255)
                                                                   gAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGCTTATCAGCCTGACTATCTCg      >  2:1249806/1‑76 (MQ=255)
                                                                   gAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTCTCTCg      >  1:3772463/1‑76 (MQ=255)
                                                                   gAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg      >  1:363888/1‑76 (MQ=255)
                                                                   gAATCA‑GA‑CGGG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg      >  2:1307477/1‑76 (MQ=255)
                                                                              |                                                                        
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCA‑GA‑C‑GG‑GCA‑AGCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC  >  NC_000913/3418762‑3418907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A