Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F999 I1 R1
|
226 |
132.7 |
9745491 |
85.7% |
8351885 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,418,840 |
+G |
coding (1070/1089 nt) |
b3269 → |
putative transport system permease protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,418,837 | 1 | . | G | 98.1%
| 274.1
/ ‑1.4
| 105 | coding (1067/1089 nt) | b3269 | putative transport system permease protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (56/47); total (57/48) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 116 total aligned reads displayed.
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑GGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC > NC_000913/3418762‑3418907
|
aaaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑c < 1:3936196/76‑1 (MQ=255)
aaaCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑g < 1:3976969/76‑1 (MQ=255)
aaaCTCCTCTCTTCCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑g < 2:1433749/76‑1 (MQ=255)
aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggg < 2:3059214/76‑1 (MQ=255)
aCTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggg < 2:2894807/76‑1 (MQ=255)
tcctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggggc < 1:2716957/76‑3 (MQ=255)
cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGACC‑GGGCa > 2:3646570/1‑76 (MQ=255)
cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggggca < 1:3330966/76‑4 (MQ=255)
cctcTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑ggggca < 2:3003414/76‑4 (MQ=255)
ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑Gc < 1:735530/76‑1 (MQ=255)
ctctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑Gc > 1:1976623/1‑76 (MQ=255)
ctTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCa < 1:3327557/76‑1 (MQ=255)
ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCAt > 2:2957993/1‑76 (MQ=255)
ttGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCAt > 1:3327879/1‑76 (MQ=255)
ttGCCCCCGCTATGGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGC‑CGGGGCAA‑GCCAt < 1:607020/76‑1 (MQ=255)
tGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATc > 2:3250040/1‑76 (MQ=255)
gccgccGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCg > 1:4538564/1‑76 (MQ=255)
ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCga < 1:4705581/76‑1 (MQ=255)
ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCga < 1:4115197/76‑1 (MQ=255)
ccgccgCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCga < 2:2667094/76‑1 (MQ=255)
cgcggcTATTGGATGTCCCGATGTGGTTTCGCTGTTTGCGGGCATCGTGCTGAATGAGA‑CGGGGCAC‑GCCATCggg < 2:842904/76‑3 (MQ=255)
gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCgaga > 2:3369226/1‑76 (MQ=255)
gccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCACCgaga > 2:2482802/1‑76 (MQ=255)
ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGAc > 1:3192357/1‑76 (MQ=255)
ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGAc > 1:1113656/1‑76 (MQ=255)
ccgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGAc < 2:4157532/76‑1 (MQ=255)
ccgcTATTGGCGATCCCGATATGGTTTCGCTGTTTGCCGGCACCGGGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGAc < 2:4452220/76‑1 (MQ=255)
cgcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACg > 1:3141729/1‑76 (MQ=255)
cgcCATTGGCTACCCCGACATGGTTTCGCTGTTTGCCGGCCCCGAGCTGAATCAGC‑CGGGGCAA‑GCCACCGAGACg < 1:1153552/76‑1 (MQ=255)
gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCCCCGTGCTGAATCAGA‑CGGGGCAA‑GCCCTCGAGACGa > 2:3418788/1‑76 (MQ=255)
gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGa < 1:1301446/76‑1 (MQ=255)
gcTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGa < 1:966795/76‑1 (MQ=255)
tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATa > 1:1626827/1‑76 (MQ=255)
tATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATa < 1:3770515/76‑1 (MQ=255)
ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGc > 1:4411555/1‑76 (MQ=255)
ttGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGc > 1:1974530/1‑76 (MQ=255)
tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGCCGATAccc > 2:731352/1‑76 (MQ=255)
tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGcc < 1:933759/76‑1 (MQ=255)
tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGcc < 1:2429143/76‑1 (MQ=255)
tGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGcc > 1:4163892/1‑76 (MQ=255)
tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGa < 1:2787706/76‑1 (MQ=255)
tATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGa > 2:592337/1‑76 (MQ=255)
aTCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGAc > 1:2236640/1‑76 (MQ=255)
tCCCGATATGTTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGAcc < 1:1846333/76‑1 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCCTGAcc > 2:4255969/1‑76 (MQ=255)
tCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGAcc < 1:3397802/76‑1 (MQ=255)
cccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCa > 1:4814623/1‑76 (MQ=255)
ccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCAt > 1:88350/1‑76 (MQ=255)
ccGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATACCCATGcccct > 2:4536588/1‑74 (MQ=255)
cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGTTAGCCATGACCATg > 1:4817051/1‑76 (MQ=255)
cGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATg > 2:4729720/1‑76 (MQ=255)
gATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGt > 1:2663102/1‑76 (MQ=255)
atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTc < 2:2437963/76‑1 (MQ=255)
atatGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTc > 1:2477877/1‑76 (MQ=255)
tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGt > 2:1182274/1‑76 (MQ=255)
tGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGt > 2:3105218/1‑76 (MQ=255)
ggTTGCGCTGTTTGCCGGCCCCGTGCGGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTc < 1:3747643/76‑1 (MQ=255)
tttCGTGGTTGGCGGGCACCGGGCTGAATCGGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTa < 2:568097/76‑1 (MQ=255)
tttCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTa > 1:4308768/1‑76 (MQ=255)
tttCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTa < 2:4369604/76‑1 (MQ=255)
ttCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTAt > 1:515195/1‑76 (MQ=255)
cGCTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCt < 1:4708197/76‑1 (MQ=255)
gCTGTTTGCCGGCACCGGGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTGCGTCTATCTg > 1:4104296/1‑76 (MQ=255)
ccTGTTTGCCGGCACCGTGCTGACTCAGA‑CGGGGCAA‑GCCATCGAGCCGATAGCCCAGACCATTTCTGGCTATCtt > 2:4872602/2‑75 (MQ=255)
cTGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGa > 1:3528333/1‑76 (MQ=255)
cTGTTTGCCGGCACCGCGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCACGACCCTGTCGGTCTATCTGa > 2:705814/1‑76 (MQ=255)
tGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt < 2:2203027/76‑1 (MQ=255)
tGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 2:1384348/1‑76 (MQ=255)
tGTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAt > 1:2253071/1‑76 (MQ=255)
ttttGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt < 1:4396006/75‑1 (MQ=255)
gTTTGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGAtt > 2:3176029/1‑76 (MQ=255)
tttGCCCACACCGTGCTGAAGCAGA‑CGGGGCAA‑GCCACCGAGACGATAGCCACGCCCATGAAGGTCTATCTGATTa > 2:2988762/1‑76 (MQ=255)
ntGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGATACGATAGCCATGACCATGTCGGTCTATCTGATTAt > 1:3537651/2‑76 (MQ=255)
tGCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc > 1:2840213/1‑76 (MQ=255)
tGCCGGCACCGGGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATc < 1:3590275/76‑1 (MQ=255)
gCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa < 1:1323925/76‑1 (MQ=255)
gCCGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCa > 1:1507830/1‑76 (MQ=255)
ccGCCACCGTGCTAAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAg < 1:4819027/76‑1 (MQ=255)
cGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTCTCTGATTATCAGc > 2:4852195/1‑76 (MQ=255)
cGGCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGc > 1:4417546/1‑76 (MQ=255)
ggCACCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc > 2:4265277/1‑76 (MQ=255)
ggCACCGTGCTGAATAAGA‑CGGGGCAG‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGcc < 2:4167608/76‑1 (MQ=255)
cccGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGa < 1:124193/75‑1 (MQ=255)
aCCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTgc > 2:4660020/1‑75 (MQ=255)
aCCGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGa > 1:4441586/1‑76 (MQ=255)
cGTGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACt < 2:1507829/76‑1 (MQ=255)
gTGCTGAATCAGA‑G‑GGGGAACGCCATCGAGACGATAGCCATGACCATGTCGGTCNATCTGATTATCAGCCTGACTa < 1:2074386/76‑1 (MQ=255)
tGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt < 1:940613/76‑1 (MQ=255)
tGCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAt > 2:4581967/1‑76 (MQ=255)
gCTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtc < 2:3557662/76‑1 (MQ=255)
cTGAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTAtct < 1:3359639/76‑1 (MQ=255)
gAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGGCTATCTCg < 2:2490915/76‑1 (MQ=255)
gAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg > 2:4619511/1‑76 (MQ=255)
gAATCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCg > 1:3492534/1‑76 (MQ=255)
aaTCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgc > 2:2020757/1‑76 (MQ=255)
agcAGA‑CGGGGGAA‑GCCCTCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct < 2:3706887/74‑1 (MQ=255)
aNCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgct < 2:3277264/76‑1 (MQ=255)
tCAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctg < 1:4375713/76‑1 (MQ=255)
cAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc > 2:1392466/1‑76 (MQ=255)
cAGA‑CGGGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCgctgc < 1:731352/76‑1 (MQ=255)
|
AAAACTCCTCTCTTGCCGCCGCTATTGGCTATCCCGATATGGTTTCGCTGTTTGCCGGCACCGTGCTGAATCAGA‑C‑GGGCAA‑GCCATCGAGACGATAGCCATGACCATGTCGGTCTATCTGATTATCAGCCTGACTATCTCGCTGC > NC_000913/3418762‑3418907
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
